SciLifeLab Fellow

JSON
CSV
XLSX
TXT

This label is applied to publications by SciLifeLab Fellows starting the year they took up their position at SciLifeLab.

Primary: Shown in the list of current labels.

Year 2022

PubMed DOI Crossref
Higher risk of severe hypoglycemia in children and adolescents with a rapid loss of C-peptide during the first 6 years after type 1 diabetes diagnosis
Grönberg A, Espes D, Carlsson P, Ludvigsson J
BMJ Open Diabetes Res Care - (-) - [2022-12-01; online 2022-11-16]
Daniel Espes SciLifeLab Fellow
PubMed DOI Crossref
Teasing apart the joint effect of demography and natural selection in the birth of a contact zone.
Li L, Milesi P, Tiret M, ..., Wu HX, Lascoux M
New Phytol. 236 (5) 1976-1987 [2022-12-00; online 2022-09-30]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
Inorganic nanoparticles for oral drug delivery: opportunities, barriers, and future perspectives
Asad S, Jacobsen AC, Teleki A
Current Opinion in Chemical Engineering 38 (-) 100869 [2022-12-00; online 2022-12-00]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus.
Zhang Z, Kryvokhyzha D, Orsucci M, ..., Milesi P, Lascoux M
New Phytol. 236 (6) 2344-2357 [2022-12-00; online 2022-09-30]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
CBP-HSF2 structural and functional interplay in Rubinstein-Taybi neurodevelopmental disorder.
de Thonel A, Ahlskog JK, Daupin K, ..., Sistonen L, Mezger V
Nat Commun 13 (1) 7002 [2022-11-16; online 2022-11-16]
Anniina Vihervaara SciLifeLab Fellow
PubMed DOI Crossref
Multi-foci parallelised RESOLFT nanoscopy in an extended field-of-view.
Casas Moreno X, Pennacchietti F, Minet G, ..., Barabas F, Testa I
J Microsc - (-) - [2022-11-14; online 2022-11-14]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Super-Resolution Microscopy Opens New Doors to Life at the Nanoscale.
Fuhrmann M, Gockel N, Arizono M, ..., Testa I, Willig KI
J. Neurosci. 42 (45) 8488-8497 [2022-11-09; online 2022-11-10]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Grey matter morphology in women with premenstrual dysphoric disorder treated with a selective progesterone receptor modulator.
Kaltsouni E, Dubol M, Wikström J, ..., Sundström-Poromaa I, Comasco E
Eur Neuropsychopharmacol 65 (-) 35-43 [2022-11-04; online 2022-11-04]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt
Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D
- - (-) - [2022-11-01; online 2022-11-01]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Pregnancy induces pancreatic insulin secretion in women with long-standing type 1 diabetes.
Espes D, Magnusson L, Caballero-Corbalan J, ..., Casas R, Carlsson PO
BMJ Open Diabetes Res Care 10 (6) - [2022-11-00; online 2022-11-10]
Daniel Espes SciLifeLab Fellow
PubMed DOI Crossref
Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5.
Kampen S, Rodríguez D, Jørgensen M, ..., Lebon G, Carlsson J
ACS chemical biology 17 (10) 2744-2752 [2022-10-21; online 2022-09-23]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Influence of the extracellular domain size on the dynamic behavior of membrane proteins.
Gurdap CO, Wedemann L, Sych T, Sezgin E
Biophys. J. 121 (20) 3826-3836 [2022-10-18; online 2022-09-14]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Far Red-Shifted CdTe Quantum Dots for Multicolour Stimulated Emission Depletion Nanoscopy.
Alvelid J, Bucci A, Testa I
Chemphyschem - (-) e202200698 [2022-10-14; online 2022-10-14]
Ilaria Testa SciLifeLab Fellow
DOI Crossref
The heat shock protein LarA activates the Lon protease at the onset of proteotoxic stress
Omnus DJ, Fink MJ, Kallazhi A, Zaragoza MX, Jonas K
- - (-) - [2022-10-10; online 2022-10-10]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Extending fluorescence anisotropy to large complexes using reversibly switchable proteins.
Volpato A, Ollech D, Alvelid J, ..., Ingaramo M, Testa I
Nat. Biotechnol. - (-) - [2022-10-10; online 2022-10-10]
Ilaria Testa SciLifeLab Fellow
DOI Crossref
Intrinsic lipolysis rate for systematic design of lipid-based formulations
Jacobsen AC, Kabedev A, Sinko PD, ..., Bergström CAS, Teleki A
Drug Deliv. and Transl. Res. - (-) - [2022-10-08; online 2022-10-08]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Molecular programming modulates hepatic lipid metabolism and adult metabolic risk in the offspring of obese mothers in a sex-specific manner.
Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M
Commun Biol 5 (1) 1057 [2022-10-04; online 2022-10-04]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Noncoding RNAs and RNA-binding proteins: emerging governors of liver physiology and metabolic diseases.
Sommerauer C, Kutter C
Am. J. Physiol., Cell Physiol. 323 (4) C1003-C1017 [2022-10-01; online 2022-08-15]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Unravelling the Phylogeny of a Common Intestinal Protist: Intrageneric Diversity of Endolimax.
Hocke EF, Jamy M, Burki F, Clark CG, Stensvold CR
Protist 173 (5) 125908 [2022-10-00; online 2022-09-07]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
The mGlu5 Receptor Protomer-Mediated Dopamine D2 Receptor Trans-Inhibition Is Dependent on the Adenosine A2A Receptor Protomer: Implications for Parkinson's Disease.
Romero-Fernandez W, Taura JJ, Crans RAJ, ..., Fuxe K, Borroto-Escuela DO
Mol. Neurobiol. 59 (10) 5955-5969 [2022-10-00; online 2022-07-12]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells.
Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C
Genome Res 32 (10) 1876-1891 [2022-10-00; online 2022-09-30]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Spatiotemporally controlled generation of NTPs for single-molecule studies.
Sabantsev A, Mao G, Aguirre Rivera J, ..., Khodorkovskiy M, Deindl S
Nat. Chem. Biol. 18 (10) 1144-1151 [2022-10-00; online 2022-09-21]
SciLifeLab Fellow Sebastian Deindl
DOI Crossref
Probing effects of the SARS-CoV-2 E protein on membrane curvature and intracellular calcium
Mehregan A, Pérez-Conesa S, Zhuang Y, ..., Ulens C, Delemotte L
Biochimica et Biophysica Acta (BBA) - Biomembranes 1864 (10) 183994 [2022-10-00; online 2022-10-00]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Markov state modelling reveals heterogeneous drug-inhibition mechanism of Calmodulin.
Westerlund AM, Sridhar A, Dahl L, ..., Bodnar AY, Delemotte L
PLoS Comput Biol 18 (10) e1010583 [2022-10-00; online 2022-10-07]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Global patterns and rates of habitat transitions across the eukaryotic tree of life.
Jamy M, Biwer C, Vaulot D, ..., Massana R, Burki F
Nat Ecol Evol 6 (10) 1458-1470 [2022-10-00; online 2022-08-04]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Event-triggered STED imaging.
Alvelid J, Damenti M, Sgattoni C, Testa I
Nat. Methods 19 (10) 1268-1275 [2022-10-00; online 2022-09-08]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Integrative functional analysis uncovers metabolic differences between Candida species.
Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S
Commun Biol 5 (1) 1013 [2022-09-26; online 2022-09-26]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Host-mycobiome metabolic interactions in health and disease.
Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S
Gut Microbes 14 (1) 2121576 [2022-09-25; online 2022-09-25]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes
Richter DJ, Berney C, Strassert JFH, ..., Burki F, de Vargas C
- 2 (-) - [2022-09-20; online 2022-09-20]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties.
Ragaller F, Andronico L, Sykora J, ..., Vattulainen I, Sezgin E
Open Biol 12 (9) 220175 [2022-09-00; online 2022-09-14]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation.
Stolz P, Mantero AS, Tvardovskiy A, ..., Elsässer SJ, Bultmann S
Nucleic Acids Res. 50 (15) 8491-8511 [2022-08-26; online 2022-07-30]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem.
Broman E, Izabel-Shen D, Rodríguez-Gijón A, ..., Garcia SL, Nascimento FJA
Microbiome 10 (1) 126 [2022-08-15; online 2022-08-15]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
The anti-inflammatory peptide Catestatin blocks chemotaxis.
Muntjewerff EM, Parv K, Mahata SK, ..., Christoffersson G, van den Bogaart G
J Leukoc Biol 112 (2) 273-278 [2022-08-00; online 2021-12-22]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Photophysiological response of Symbiodiniaceae single cells to temperature stress.
Xiao L, Johansson S, Rughöft S, ..., Tenje M, Behrendt L
ISME J 16 (8) 2060-2064 [2022-08-00; online 2022-04-26]
Fabien Burki SciLifeLab Fellow
DOI Crossref
Robust and integrative Bayesian neural networks for likelihood-free parameter inference
Wrede F, Eriksson R, Jiang R, ..., Hellander A, Singh P
- - (-) - [2022-07-18; online 2022-07-18]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders.
Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S
iScience 25 (7) 104513 [2022-07-15; online 2022-06-02]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Myeloid cell-specific topoisomerase 1 inhibition using DNA origami mitigates neuroinflammation.
Zhu K, Wang Y, Sarlus H, ..., Högberg B, Harris RA
EMBO Rep. 23 (7) e54499 [2022-07-05; online 2022-05-20]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Adenosine A2A receptor antagonists: from caffeine to selective non-xanthines.
Jacobson KA, Gao ZG, Matricon P, Eddy MT, Carlsson J
Br J Pharmacol 179 (14) 3496-3511 [2022-07-00; online 2020-06-19]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
HSFs drive transcription of distinct genes and enhancers during oxidative stress and heat shock.
Himanen SV, Puustinen MC, Da Silva AJ, Vihervaara A, Sistonen L
Nucleic Acids Res. 50 (11) 6102-6115 [2022-06-24; online 2022-06-11]
Anniina Vihervaara SciLifeLab Fellow
PubMed DOI Crossref
The VirF21:VirF30 protein ratio is affected by temperature and impacts Shigella flexneri host cell invasion.
Skovajsová E, Colonna B, Prosseda G, Sellin ME, Di Martino ML
FEMS Microbiol. Lett. 369 (1) - [2022-06-22; online 2022-05-07]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles.
Céspedes PF, Jainarayanan A, Fernández-Messina L, ..., Sánchez-Madrid F, Dustin ML
Nat Commun 13 (1) 3460 [2022-06-16; online 2022-06-16]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Differential grey matter structure in women with premenstrual dysphoric disorder: evidence from brain morphometry and data-driven classification.
Dubol M, Stiernman L, Wikström J, ..., Bixo M, Comasco E
Transl Psychiatry 12 (1) 250 [2022-06-15; online 2022-06-15]
Erika Comasco SciLifeLab Fellow
Incidensen av levercancer ökar över hela världen
Kutter C
Onkologi i Sverige - (-) - [2022-06-10; online 2022-06-10]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development.
Luu TT, Søndergaard JN, Peña-Pérez L, ..., Månsson R, Kadri N
Front Immunol 13 (-) 854312 [2022-06-09; online 2022-06-09]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Mechanism of mitoribosomal small subunit biogenesis and preinitiation.
Itoh Y, Khawaja A, Laptev I, ..., Rorbach J, Amunts A
Nature - (-) - [2022-06-08; online 2022-06-08]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Erratum: Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes.
Carravilla P, Dasgupta A, Zhurgenbayeva G, ..., Sezgin E, Eggeling C
Biophys Rep (N Y) 2 (2) None [2022-06-08; online 2022-06-08]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Subtype-specific responses of hKv7.4 and hKv7.5 channels to polyunsaturated fatty acids reveal an unconventional modulatory site and mechanism.
Frampton DJA, Choudhury K, Nikesjö J, Delemotte L, Liin SI
Elife 11 (-) - [2022-06-01; online 2022-06-01]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe.
Cornille A, Tiret M, Salcedo A, ..., Wright SI, Lascoux M
AoB Plants 14 (3) plac011 [2022-06-00; online 2022-04-02]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
The limits of human microRNA annotation have been met.
Fromm B, Zhong X, Tarbier M, Friedländer MR, Hackenberg M
RNA 28 (6) 781-785 [2022-06-00; online 2022-03-02]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
TGFβ selects for pro-stemness over pro-invasive phenotypes during cancer cell epithelial-mesenchymal transition.
Tsubakihara Y, Ohata Y, Okita Y, ..., Heldin CH, Moustakas A
Mol Oncol 16 (12) 2330-2354 [2022-06-00; online 2022-04-10]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment.
Pomerantz A, Sahlin K, Vasiljevic N, ..., Ogden R, Prost S
Nat Protoc 17 (6) 1415-1443 [2022-06-00; online 2022-04-11]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation.
Kumar B, Navarro C, Winblad N, ..., Lanner F, Elsässer SJ
Nat. Cell Biol. 24 (6) 845-857 [2022-06-00; online 2022-05-30]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
OPUSeq simplifies detection of low-frequency DNA variants and uncovers fragmentase-associated artifacts.
Alekseenko A, Wang J, Barrett D, Pelechano V
NAR Genomics and Bioinformatics 4 (2) lqac048 [2022-06-00; online 2022-06-27]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Inhibition of Respiratory Syncytial Virus Infection by Small Non-Coding RNA Fragments.
Pålsson SA, Sekar V, Kutter C, Friedländer MR, Spetz AL
Int J Mol Sci 23 (11) - [2022-05-26; online 2022-05-26]
Claudia Kutter SciLifeLab Fellow
DOI Crossref
Hyperthermia-Induced In Situ Drug Amorphization by Superparamagnetic Nanoparticles in Oral Dosage Forms
Ansari SR, Hempel NJ, Asad S, ..., Löbmann K, Teleki A
ACS Appl Mater Interfaces 14 (19) 21978-21988 [2022-05-18; online 2022-04-22]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Patatin-like phospholipase CapV in Escherichia coli - morphological and physiological effects of one amino acid substitution.
Li F, Cao L, Bähre H, ..., Rohde M, Römling U
NPJ Biofilms Microbiomes 8 (1) 39 [2022-05-11; online 2022-05-11]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Lipid-Protein Interactions in Plasma Membrane Organization and Function.
Sych T, Levental KR, Sezgin E
Annu Rev Biophys 51 (-) 135-156 [2022-05-09; online 2022-01-04]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Maternal prenatal depressive symptoms and toddler behavior: an umbilical cord blood epigenome-wide association study.
Kallak TK, Fransson E, Bränn E, ..., Lyle R, Skalkidou A
Transl Psychiatry 12 (1) 186 [2022-05-05; online 2022-05-05]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Scalable federated machine learning with FEDn
Ekmefjord M, Ait-Mlouk A, Alawadi S, ..., Toor S, Hellander A
- - (-) - [2022-05-00; online 2022-05-00]
Prashant Singh SciLifeLab Fellow
DOI Crossref
Direct Observation of Na,K‐ATPase Oligomers in The Plasma Membrane of Living Cells by FRET‐FCS
Nordahl L, Wennmalm S, Jönsson J, ..., Akkuratov EE, Brismar H
The FASEB Journal 36 (S1) - [2022-05-00; online 2022-05-13]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
A motile doublet form of Salmonella Typhimurium diversifies target search behavior at the epithelial surface.
Ek V, Fattinger SA, Florbrant A, ..., Eriksson J, Sellin ME
Mol. Microbiol. 117 (5) 1156-1172 [2022-05-00; online 2022-04-12]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Understanding immune signaling using advanced imaging techniques.
Brameshuber M, Klotzsch E, Ponjavic A, Sezgin E
Biochem. Soc. Trans. 50 (2) 853-866 [2022-04-29; online 2022-03-29]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Cancer cells use self-inflicted DNA breaks to evade growth limits imposed by genotoxic stress.
Larsen BD, Benada J, Yung PYK, ..., Bartek J, Sørensen CS
Science (New York, N.Y.) 376 (6592) 476-483 [2022-04-29; online 2022-04-28]
SciLifeLab Fellow Simon Elsässer
DOI Crossref
The Role of Bio‐based Excipients in the Formulation of Lipophilic Nutraceuticals
Teleki A, Tsekou C, Connolly A
- - (-) 315-336 [2022-04-19; online 2022-04-00]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions.
Ghaffari P, Shoaie S, Nielsen LK
J Transl Med 20 (1) 173 [2022-04-11; online 2022-04-11]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Grey matter correlates of affective and somatic symptoms of premenstrual dysphoric disorder.
Dubol M, Wikström J, Lanzenberger R, ..., Sundström-Poromaa I, Comasco E
Sci Rep 12 (1) 5996 [2022-04-09; online 2022-04-09]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics.
Crowe-McAuliffe C, Murina V, Turnbull KJ, ..., Wilson DN, Hauryliuk V
Nat Commun 13 (1) 1860 [2022-04-06; online 2022-04-06]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Uniting diversity to create a more inclusive academic environment.
Delemotte L, Garcia SL, Rodríguez-Gijón A, Sezgin E, Vihervaara A
J. Cell. Sci. 135 (7) - [2022-04-01; online 2022-04-12]
Anniina Vihervaara Erdinc Sezgin Lucie Delemotte Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Giant plasma membrane vesicles to study plasma membrane structure and dynamics.
Sezgin E
Biochim Biophys Acta Biomembr 1864 (4) 183857 [2022-04-01; online 2022-01-04]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach.
Li X, Shong K, Kim W, ..., Zhang C, Mardinoglu A
EBioMedicine 78 (-) 103963 [2022-04-00; online 2022-03-25]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Long-term SARS-CoV-2-specific and cross-reactive cellular immune responses correlate with humoral responses, disease severity, and symptomatology.
Laurén I, Havervall S, Ng H, ..., Thålin C, Mangsbo S
Immun Inflamm Dis 10 (4) e595 [2022-04-00; online 2022-03-30]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging.
Mishra K, Fuenzalida-Werner JP, Pennacchietti F, ..., Ntziachristos V, Stiel AC
Nat. Biotechnol. 40 (4) 598-605 [2022-04-00; online 2021-11-29]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Acute sleep loss alters circulating fibroblast growth factor 21 levels in humans: A randomised crossover trial.
Mateus Brandão LE, Espes D, Westholm JO, ..., Benedict C, Cedernaes J
J Sleep Res 31 (2) e13472 [2022-04-00; online 2021-09-02]
Daniel Espes SciLifeLab Fellow
PubMed DOI Crossref
A Gene Co-Expression Network-Based Drug Repositioning Approach Identifies Candidates for Treatment of Hepatocellular Carcinoma.
Yuan M, Shong K, Li X, ..., Zhang C, Mardinoglu A
Cancers (Basel) 14 (6) - [2022-03-19; online 2022-03-19]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Quantifying RNA synthesis at rate-limiting steps of transcription using nascent RNA-sequencing data.
Rabenius A, Chandrakumaran S, Sistonen L, Vihervaara A
STAR Protoc 3 (1) 101036 [2022-03-18; online 2022-01-05]
Anniina Vihervaara SciLifeLab Fellow
DOI Crossref
minute: A MINUTE-ChIP data analysis workflow
Navarro C, Martin M, Elsässer S
- - (-) - [2022-03-17; online 2022-03-17]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Norway spruce postglacial recolonization of Fennoscandia.
Nota K, Klaminder J, Milesi P, ..., Suyama Y, Parducci L
Nat Commun 13 (1) 1333 [2022-03-14; online 2022-03-14]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Sirtuin-1 sensitive lysine-136 acetylation drives phase separation and pathological aggregation of TDP-43.
Garcia Morato J, Hans F, von Zweydorf F, ..., Neumann M, Kahle PJ
Nat Commun 13 (1) 1223 [2022-03-09; online 2022-03-09]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA.
Gañez-Zapater A, Mackowiak SD, Guo Y, ..., Visa N, Östlund Farrants AK
Mol. Genet. Genomics 297 (2) 463-484 [2022-03-00; online 2022-02-20]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
On the origin of TSAR: morphology, diversity and phylogeny of Telonemia.
Tikhonenkov DV, Jamy M, Borodina AS, ..., Burki F, Karpov SA
Open Biol 12 (3) 210325 [2022-03-00; online 2022-03-16]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
ADAR1- and ADAR2-mediated regulation of maturation and targeting of miR-376b to modulate GABA neurotransmitter catabolism.
Widmark A, Sagredo EA, Karlström V, ..., Daniel C, Öhman M
J Biol Chem 298 (3) 101682 [2022-03-00; online 2022-02-03]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction.
Begnini F, Geschwindner S, Johansson P, ..., Schiesser S, Kihlberg J
J Med Chem 65 (4) 3473-3517 [2022-02-24; online 2022-02-02]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
White matter microstructure and volume correlates of premenstrual dysphoric disorder.
Gu X, Dubol M, Stiernman L, ..., Sundström-Poromaa I, Comasco E
J Psychiatry Neurosci 47 (1) E67-E76 [2022-02-23; online 2022-02-23]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses.
Luttens A, Gullberg H, Abdurakhmanov E, ..., Danielson UH, Carlsson J
Journal of the American Chemical Society 144 (7) 2905-2920 [2022-02-23; online 2022-02-10]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Identification of electroporation sites in the complex lipid organization of the plasma membrane.
Rems L, Tang X, Zhao F, ..., Testa I, Delemotte L
Elife 11 (-) - [2022-02-23; online 2022-02-23]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Genome-wide mapping of G-quadruplex structures with CUT&Tag.
Lyu J, Shao R, Kwong Yung PY, Elsässer SJ
Nucleic Acids Res. 50 (3) e13 [2022-02-22; online 2021-11-19]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Prevalence and correlates of current suicidal ideation in women with premenstrual dysphoric disorder.
Wikman A, Sacher J, Bixo M, ..., Comasco E, Sundström Poromaa I
BMC Womens Health 22 (1) 35 [2022-02-11; online 2022-02-11]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Genomics and adaptation in forest ecosystems.
Neophytou C, Heer K, Milesi P, ..., Rellstab C, Gugerli F
Tree Genet Genomes 18 (2) 12 [2022-02-09; online 2022-02-09]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Expression Profiles of Estrogen-Regulated MicroRNAs in Cancer Cells.
Archer A, Kutter C, Williams C
Methods in molecular biology (Clifton, N.J.) 2418 (-) 313-343 [2022-02-05; online 2022-02-05]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
ZFP207 sustains pluripotency by coordinating OCT4 stability, alternative splicing and RNA export.
Malla S, Prasad Bhattarai D, Groza P, ..., Kutter C, Aguilo F
EMBO Rep. 23 (3) e53191 [2022-02-03; online 2022-01-17]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
High-Definition DIC Imaging Uncovers Transient Stages of Pathogen Infection Cycles on the Surface of Human Adult Stem Cell-Derived Intestinal Epithelium.
van Rijn JM, Eriksson J, Grüttner J, ..., Svärd SG, Sellin ME
MBio 13 (1) e0002222 [2022-02-01; online 2022-02-01]
Mikael Sellin SciLifeLab Fellow
DOI Crossref
ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal
Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I
Elife 11 (-) - [2022-02-01; online 2022-02-01]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial.
Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL
J Hepatol 76 (2) 332-342 [2022-02-00; online 2021-09-24]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Sequence specificity in DNA binding is mainly governed by association.
Marklund E, Mao G, Yuan J, ..., Deindl S, Elf J
Science (New York, N.Y.) 375 (6579) 442-445 [2022-01-28; online 2022-01-27]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Role of Cellular Metabolism during Candida-Host Interactions.
Pellon A, Begum N, Sadeghi Nasab SD, ..., Shoaie S, Moyes DL
Pathogens 11 (2) - [2022-01-28; online 2022-01-28]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Irisin-A Pancreatic Islet Hormone.
Norman D, Drott CJ, Carlsson PO, Espes D
Biomedicines 10 (2) - [2022-01-25; online 2022-01-25]
Daniel Espes SciLifeLab Fellow
PubMed DOI Crossref
BioRssay: an R package for analyses of bioassays and probit graphs.
Karunarathne P, Pocquet N, Labbé P, Milesi P
Parasit Vectors 15 (1) 35 [2022-01-24; online 2022-01-24]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
CCT3-LINC00326 axis regulates hepatocarcinogenic lipid metabolism.
Søndergaard JN, Sommerauer C, Atanasoai I, ..., Barragan I, Kutter C
Gut 71 (10) 2081-2092 [2022-01-12; online 2022-01-12]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
A bispecific monomeric nanobody induces spike trimer dimers and neutralizes SARS-CoV-2 in vivo.
Hanke L, Das H, Sheward DJ, ..., Murrell B, McInerney GM
Nat Commun 13 (1) 155 [2022-01-10; online 2022-01-10]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
MirGeneDB 2.1: toward a complete sampling of all major animal phyla.
Fromm B, Høye E, Domanska D, ..., Friedländer MR, Peterson KJ
Nucleic Acids Res. 50 (D1) D204-D210 [2022-01-07; online 2021-12-02]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
TRP channels: branching out into the fungal kingdom.
Hellmich UA, Delemotte L
Structure 30 (1) 2-4 [2022-01-06; online 2022-01-08]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
A Genomic Perspective Across Earth's Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy.
Rodríguez-Gijón A, Nuy JK, Mehrshad M, ..., Woyke T, Garcia SL
Front Microbiol 12 (-) 761869 [2022-01-05; online 2022-01-05]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins.
Schlesinger D, Elsässer SJ
FEBS J. 289 (1) 53-74 [2022-01-00; online 2021-02-24]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Putative regulation of macrophage-mediated inflammation by catestatin.
Muntjewerff EM, Christoffersson G, Mahata SK, van den Bogaart G
Trends Immunol. 43 (1) 41-50 [2022-01-00; online 2021-11-27]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods.
Jiang R, Singh P, Wrede F, Hellander A, Petzold L
PLoS Comput Biol 18 (1) e1009830 [2022-01-00; online 2022-01-31]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Distinct transcription kinetics of pluripotent cell states.
Shao R, Kumar B, Lidschreiber K, ..., Cramer P, Elsässer SJ
Mol Syst Biol 18 (1) e10407 [2022-01-00; online 2022-01-13]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Cell type-specific analysis by single-cell profiling identifies a stable mammalian tRNA-mRNA interface and increased translation efficiency in neurons.
Gao W, Gallardo-Dodd CJ, Kutter C
Genome Res 32 (1) 97-110 [2022-01-00; online 2021-12-02]
Claudia Kutter SciLifeLab Fellow

Year 2021

PubMed DOI Crossref
Accurate spliced alignment of long RNA sequencing reads
Sahlin K, Mäkinen V
Bioinformatics 37 (24) 4643-4651 [2021-12-11; online 2021-07-24]
Kristoffer Sahlin SciLifeLab Fellow
DOI Crossref
Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme
Kaynar A, Altay O, Li X, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 22 (24) 13213 [2021-12-08; online 2021-12-08]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes.
Carravilla P, Dasgupta A, Zhurgenbayeva G, ..., Sezgin E, Eggeling C
Biophys Rep (N Y) 1 (2) None [2021-12-08; online 2021-12-08]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina.
Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T
Mol. Biol. Evol. - (-) - [2021-12-08; online 2021-12-08]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
An open state of a voltage-gated sodium channel involving a π-helix and conserved pore-facing Asparagine
Choudhury K, Kasimova MA, McComas S, Howard RJ, Delemotte L
Biophysical Journal 121 (1) 11-22 [2021-12-07; online 2021-12-07]
Lucie Delemotte SciLifeLab Fellow
DOI Crossref
Proactive autoscaling for edge computing systems with kubernetes
Ju L, Singh P, Toor S
- - (-) - [2021-12-06; online 2022-02-07]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Salmonella effector driven invasion of the gut epithelium: breaking in and setting the house on fire.
Fattinger SA, Sellin ME, Hardt WD
Curr Opin Microbiol 64 (-) 9-18 [2021-12-00; online 2021-09-06]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Safety in multi-assembly via paths appearing in all path covers of a DAG.
Caceres M, Mumey B, Husic E, ..., Sahlin K, Tomescu AII
IEEE/ACM Trans Comput Biol Bioinform PP (-) - [2021-11-30; online 2021-11-30]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Associations of prenatal exposure to mixtures of organochlorine pesticides and smoking and drinking behaviors in adolescence.
Dickerson AS, Deng Z, Ransome Y, Factor-Litvak P, Karlsson O
Environ. Res. - (-) 112431 [2021-11-27; online 2021-11-27]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Tumorigenic activity of alternative per- and polyfluoroalkyl substances (PFAS): Mechanistic in vitro studies.
Pierozan P, Cattani D, Karlsson O
Sci. Total Environ. - (-) 151945 [2021-11-26; online 2021-11-26]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Fragment-based design of selective GPCR ligands guided by free energy simulations.
Matricon P, Vo DD, Gao ZG, ..., Jacobson KA, Carlsson J
Chem. Commun. (Camb.) 57 (92) 12305-12308 [2021-11-19; online 2021-11-19]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae.
Schön ME, Zlatogursky VV, Singh RP, ..., Wideman JG, Burki F
Nat Commun 12 (1) 6651 [2021-11-17; online 2021-11-17]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
MapToCleave: High-throughput profiling of microRNA biogenesis in living cells.
Kang W, Fromm B, Houben AJ, ..., Biryukova I, Friedländer MR
Cell Reports 37 (7) 110015 [2021-11-16; online 2021-11-18]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Engineered Human Induced Pluripotent Cells Enable Genetic Code Expansion in Brain Organoids.
van Husen LS, Katsori AM, Meineke B, ..., Schedin-Weiss S, Elsässer SJ
Chembiochem 22 (22) 3208-3213 [2021-11-16; online 2021-09-13]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Allosteric Effect of Nanobody Binding on Ligand-Specific Active States of the β2 Adrenergic Receptor.
Chen Y, Fleetwood O, Pérez-Conesa S, Delemotte L
J Chem Inf Model - (-) - [2021-11-15; online 2021-11-15]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
A Genetically Encoded Picolyl Azide for Improved Live Cell Copper Click Labeling.
Meineke B, Heimgärtner J, Craig AJ, ..., Moodie LWK, Elsässer SJ
Front Chem 9 (-) 768535 [2021-11-11; online 2021-11-11]
SciLifeLab Fellow Simon Elsässer
DOI Crossref
Large-scale identification of RBP-RNA interactions by RAPseq refines essentials of post-transcriptional gene regulation
Atanasoai I, Papavasileiou S, Preiß N, Kutter C
- - (-) - [2021-11-09; online 2021-11-09]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Intercrypt sentinel macrophages tune antibacterial NF-κB responses in gut epithelial cells via TNF.
Hausmann A, Felmy B, Kunz L, ..., Sellin ME, Hardt WD
J. Exp. Med. 218 (11) - [2021-11-01; online 2021-09-16]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Effective sequence similarity detection with strobemers
Sahlin K
Genome Res. 31 (11) 2080-2094 [2021-11-00; online 2021-10-19]
Kristoffer Sahlin SciLifeLab Fellow
DOI Crossref
Event-triggered STED imaging
Alvelid J, Damenti M, Testa I
- - (-) - [2021-10-28; online 2021-10-28]
Ilaria Testa SciLifeLab Fellow
DOI Crossref
Comprehensive analysis of chemical and biological problems associated with browning agents used in aquatic studies
Scharnweber K, Peura S, Attermeyer K, ..., Tranvik LJ, Székely AJ
Limnol Oceanogr Methods - (-) - [2021-10-28; online 2021-10-28]
Sarahi Garcia SciLifeLab Fellow
DOI Crossref
Revealing the Molecular Mechanisms of Alzheimer’s Disease Based on Network Analysis
Bayraktar A, Lam S, Altay O, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 22 (21) 11556 [2021-10-26; online 2021-10-26]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
The Lon protease temporally restricts polar cell differentiation events during the Caulobacter cell cycle.
Omnus DJ, Fink MJ, Szwedo K, Jonas K
Elife 10 (-) - [2021-10-25; online 2021-10-25]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Chemoselective and Highly Sensitive Quantification of Gut Microbiome and Human Metabolites.
Lin W, Conway LP, Vujasinovic M, Löhr JM, Globisch D
Angew. Chem. Int. Ed. Engl. 60 (43) 23232-23240 [2021-10-18; online 2021-09-17]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Diversity and ecology of protists revealed by metabarcoding.
Burki F, Sandin MM, Jamy M
Curr. Biol. 31 (19) R1267-R1280 [2021-10-11; online 2021-10-13]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Squaric acid as a new chemoselective moiety for mass spectrometry-based metabolomics analysis of amines.
Lin W, Yang Z, Kaur A, ..., Löhr JM, Globisch D
RSC Chem Biol 2 (5) 1479-1483 [2021-10-07; online 2021-08-12]
Daniel Globisch SciLifeLab Fellow
DOI Crossref
Nanoengineered DNA origami with repurposed TOP1 inhibitors targeting myeloid cells for the mitigation of neuroinflammation
Zhu K, Wang Y, Sarlus H, ..., Högberg B, Harris RA
- - (-) - [2021-10-04; online 2021-10-04]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Differential susceptibility of rat primary neurons and neural stem cells to PFOS and PFOA toxicity.
Pierozan P, Karlsson O
Toxicol. Lett. 349 (-) 61-68 [2021-10-01; online 2021-06-11]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Structure-Based Virtual Screening for Ligands of G Protein-Coupled Receptors: What Can Molecular Docking Do for You?
Ballante F, Kooistra AJ, Kampen S, de Graaf C, Carlsson J
Pharmacol Rev 73 (4) 527-565 [2021-10-00; online 2021-12-16]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Corrigendum: Ancient microRNA profiles of 14,300-yr-old canid samples confirm taxonomic origin and provide glimpses into tissue-specific gene regulation from the Pleistocene.
Fromm B, Tarbier M, Smith O, ..., Gilbert MTP, Friedländer MR
RNA 27 (10) 1291 [2021-10-00; online 2021-09-18]
Marc Friedländer SciLifeLab Fellow
DOI Crossref
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients
Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A
Mol Syst Biol 17 (10) - [2021-10-00; online 2021-10-25]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Association of levonorgestrel intrauterine devices with stress reactivity, mental health, quality of life and sexual functioning: A systematic review.
Bürger Z, Bucher AM, Comasco E, ..., Kogler L, Derntl B
Front Neuroendocrinol 63 (-) 100943 [2021-10-00; online 2021-08-20]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
A practical guide to large-scale docking.
Bender BJ, Gahbauer S, Luttens A, ..., Irwin JJ, Shoichet BK
Nat Protoc 16 (10) 4799-4832 [2021-10-00; online 2021-09-24]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
An evaluation of a FluoroSpot assay as a diagnostic tool to determine SARS-CoV-2 specific T cell responses.
Mangsbo SM, Havervall S, Laurén I, ..., Klingström J, Thålin C
PLoS ONE 16 (9) e0258041 [2021-09-30; online 2021-09-30]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability.
Felletti M, Romilly C, Wagner EGH, Jonas K
Elife 10 (-) - [2021-09-15; online 2021-09-15]
Kristina Jonas SciLifeLab Fellow
DOI Crossref
Cryo-EM structure of the human Kv3.1 channel reveals gating control by the cytoplasmic T1 domain
Chi G, Liang Q, Srid A, ..., Covarrubias M, Duerr K
- - (-) - [2021-09-09; online 2021-09-09]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Selection on accessible chromatin regions in Capsella grandiflora.
Horvath R, Josephs EB, Pesquet E, ..., Scofield D, Slotte T
Mol. Biol. Evol. - (-) - [2021-09-08; online 2021-09-08]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Dynamin inhibition causes context-dependent cell death of leukemia and lymphoma cells.
von Beek C, Alriksson L, Palle J, ..., Sellin ME, Pejler G
PLoS ONE 16 (9) e0256708 [2021-09-07; online 2021-09-07]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome.
Bacic L, Gaullier G, Sabantsev A, ..., Boulton SJ, Deindl S
Elife 10 (-) - [2021-09-06; online 2021-09-06]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
IgE cross-linking induces activation of human and mouse mast cell progenitors.
Méndez-Enríquez E, Salomonsson M, Eriksson J, ..., Sellin ME, Hallgren J
J. Allergy Clin. Immunol. - (-) - [2021-09-04; online 2021-09-04]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
The long-time orphan protist Meringosphaera mediterranea Lohmann, 1902 [1903] is a centrohelid heliozoan.
Zlatogursky VV, Shɨshkin Y, Drachko D, Burki F
J. Eukaryot. Microbiol. 68 (5) e12860 [2021-09-00; online 2021-07-12]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
RecA finds homologous DNA by reduced dimensionality search.
Wiktor J, Gynnå AH, Leroy P, ..., Testa I, Elf J
Nature 597 (7876) 426-429 [2021-09-00; online 2021-09-01]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Positive allosteric mechanisms of adenosine A1 receptor-mediated analgesia.
Draper-Joyce CJ, Bhola R, Wang J, ..., Imlach WL, Christopoulos A
Nature 597 (7877) 571-576 [2021-09-00; online 2021-09-08]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Killing two enemies with one stone? Genomics of resistance to two sympatric pathogens in Norway spruce.
Capador-Barreto HD, Bernhardsson C, Milesi P, ..., Stenlid J, Elfstrand M
Mol. Ecol. 30 (18) 4433-4447 [2021-09-00; online 2021-08-05]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies.
Ezzamouri B, Shoaie S, Ledesma-Amaro R
Front Microbiol 12 (-) 681982 [2021-08-31; online 2021-08-31]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Not4 and Not5 modulate translation elongation by Rps7A ubiquitination, Rli1 moonlighting, and condensates that exclude eIF5A.
Allen GE, Panasenko OO, Villanyi Z, ..., Ignatova Z, Collart MA
Cell Reports 36 (9) 109633 [2021-08-31; online 2021-09-02]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Convolutional Neural Networks as Summary Statistics for Approximate Bayesian Computation.
Akesson M, Singh P, Wrede F, Hellander A
IEEE/ACM Trans Comput Biol Bioinform PP (-) - [2021-08-30; online 2021-08-30]
Prashant Singh SciLifeLab Fellow
DOI Crossref
Enterotoxigenic Escherichia coli display a distinct growth phase before entry into stationary phase with shifts in tryptophan- fucose- and putrescine metabolism and degradation of neurotransmitter precursors
Joffré E, Xiao X, Correia MSP, ..., Zhu B, Sjöling Å
- - (-) - [2021-08-26; online 2021-08-26]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Structure and Sequence-based Computational Approaches to Allosteric Signal Transduction: Application to Electromechanical Coupling in Voltage-gated Ion Channels.
Elbahnsi A, Delemotte L
J. Mol. Biol. 433 (17) 167095 [2021-08-20; online 2021-06-06]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Functional cross-talk between phosphorylation and disease-causing mutations in the cardiac sodium channel Nav1.5.
Galleano I, Harms H, Choudhury K, ..., Delemotte L, Pless SA
Proc. Natl. Acad. Sci. U.S.A. 118 (33) - [2021-08-17; online 2021-08-11]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Advances in the Relationships Between Cow's Milk Protein Allergy and Gut Microbiota in Infants.
Yang Y, Li X, Yang Y, ..., Ji B, Wei Y
Front Microbiol 12 (-) 716667 [2021-08-16; online 2021-08-16]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
ImSwitch: Generalizing microscope control in Python
Moreno X, Al-Kadhimi S, Alvelid J, Bodén A, Testa I
JOSS 6 (64) 3394 [2021-08-14; online 2021-08-14]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Candidatus Methylumidiphilus Drives Peaks in Methanotrophic Relative Abundance in Stratified Lakes and Ponds Across Northern Landscapes.
Martin G, Rissanen AJ, Garcia SL, ..., Buck M, Peura S
Front Microbiol 12 (-) 669937 [2021-08-12; online 2021-08-12]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Structure-Guided Design of G-Protein-Coupled Receptor Polypharmacology.
Kampen S, Duy Vo D, Zhang X, ..., Kihlberg J, Carlsson J
Angew. Chem. Int. Ed. Engl. 60 (33) 18022-18030 [2021-08-09; online 2021-07-16]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Sample-to-answer COVID-19 nucleic acid testing using a low-cost centrifugal microfluidic platform with bead-based signal enhancement and smartphone read-out.
Soares RRG, Akhtar AS, Pinto IF, ..., Pelechano V, Russom A
Lab Chip 21 (15) 2932-2944 [2021-08-07; online 2021-06-11]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Genome assemblies of three closely related leaf beetle species (Galerucella spp.).
Yang X, Slotte T, Dainat J, Hambäck PA
G3 11 (8) - [2021-08-07; online 2021-12-02]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
The exon-junction complex helicase eIF4A3 controls cell fate via coordinated regulation of ribosome biogenesis and translational output.
Kanellis DC, Espinoza JA, Zisi A, ..., Lindström MS, Bartek J
Sci Adv 7 (32) - [2021-08-00; online 2021-08-04]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast.
Garrido-Godino AI, Gupta I, Gutiérrez-Santiago F, ..., Pelechano V, Navarro F
RNA Biol 18 (8) 1206-1220 [2021-08-00; online 2020-11-01]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.
Tice AK, Žihala D, Pánek T, ..., Kolísko M, Brown MW
PLoS Biol. 19 (8) e3001365 [2021-08-00; online 2021-08-06]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
In vitro neuroprotective effects of farnesene sesquiterpene on alzheimer's disease model of differentiated neuroblastoma cell line.
Arslan ME, Türkez H, Mardinoğlu A
Int J Neurosci 131 (8) 745-754 [2021-08-00; online 2020-04-19]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
Getting a grip with kirigami
Teleki A, Artursson P
Nat. Mater. 20 (8) 1043-1044 [2021-08-00; online 2021-07-28]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Aggregation and mobility of membrane proteins interplay with local lipid order in the plasma membrane of T cells.
Urbančič I, Schiffelers L, Jenkins E, ..., Sezgin E, Eggeling C
FEBS Lett. 595 (16) 2127-2146 [2021-08-00; online 2021-07-07]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
ADP-ribosyltransferases, an update on function and nomenclature.
Lüscher B, Ahel I, Altmeyer M, ..., Zaja R, Ziegler M
FEBS J. - (-) - [2021-07-29; online 2021-07-29]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
DNA methylation of Vesicular Glutamate Transporters in the mesocorticolimbic brain following early-life stress and adult ethanol exposure-an explorative study.
Vrettou M, Yan L, Nilsson KW, ..., Nylander I, Comasco E
Sci Rep 11 (1) 15322 [2021-07-28; online 2021-07-28]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Anticancer effects of novel NSAIDs derivatives on cultured human glioblastoma cells.
Özdemir Ö, Marinelli L, Cacciatore I, ..., Mardinoglu A, Turkez H
Z Naturforsch C J Biosci 76 (7-8) 329-335 [2021-07-27; online 2020-09-05]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Differential regulation of oxidative stress, microbiota-derived, and energy metabolites in the mouse brain during sleep.
Vallianatou T, Lin W, Bèchet NB, ..., Lundgaard I, Globisch D
J. Cereb. Blood Flow Metab. - (-) 271678X211033358 [2021-07-22; online 2021-07-22]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Common and mutation specific phenotypes of KRAS and BRAF mutations in colorectal cancer cells revealed by integrative -omics analysis.
Kundu S, Ali MA, Handin N, ..., Globisch D, Sjöblom T
J. Exp. Clin. Cancer Res. 40 (1) 225 [2021-07-07; online 2021-07-07]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
iNetModels 2.0: an interactive visualization and database of multi-omics data.
Arif M, Zhang C, Li X, ..., Uhlen M, Mardinoglu A
Nucleic Acids Res. 49 (W1) W271-W276 [2021-07-02; online 2021-04-14]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
The Effect of the Molecular Weight of Polyvinylpyrrolidone and the Model Drug on Laser-Induced In Situ Amorphization
Hempel NJ, Merkl P, Knopp MM, ..., Sotiriou GA, Löbmann K
Molecules 26 (13) 4035 [2021-07-01; online 2021-07-01]
Alexandra Teleki SciLifeLab Fellow
DOI Crossref
CRISPR/Cas9 deletions induce adverse on-target genomic effects leading to functional DNA in human cells
Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C
- - (-) - [2021-07-01; online 2021-07-01]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Simultaneous detection of SARS-CoV-2 and pandemic (H1N1) 2009 virus with real-time isothermal platform.
Yu L, Wang J, Li X, ..., Guo X, Yin X
Heliyon 7 (7) e07584 [2021-07-00; online 2021-07-15]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Safety Assessments of Nickel Boride Nanoparticles on the Human Pulmonary Alveolar Cells by Using Cell Viability and Gene Expression Analyses.
Türkez H, Arslan ME, Sönmez E, ..., Açikyildiz M, Mardinoğlu A
Biol Trace Elem Res 199 (7) 2602-2611 [2021-07-00; online 2020-09-09]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
STED and parallelized RESOLFT optical nanoscopy of the tubular endoplasmic reticulum and its mitochondrial contacts in neuronal cells.
Damenti M, Coceano G, Pennacchietti F, Bodén A, Testa I
Neurobiol. Dis. 155 (-) 105361 [2021-07-00; online 2021-04-12]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik S, Marques AC, Xing X, ..., Willig A, Xu Z
Clin. Microbiol. Infect. 27 (7) 1036.e1-1036.e8 [2021-07-00; online 2021-04-02]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae).
Bachmann JA, Tedder A, Fracassetti M, ..., Köhler C, Slotte T
Heredity (Edinb) 127 (1) 124-134 [2021-07-00; online 2021-04-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Molecular Dynamics Simulations of Ion Channels.
Carnevale V, Delemotte L, Howard RJ
Trends Biochem. Sci. 46 (7) 621-622 [2021-07-00; online 2021-04-30]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Distinct genetic regions are associated with differential population susceptibility to chemical exposures.
Kosnik MB, Enroth S, Karlsson O
Environ Int 152 (-) 106488 [2021-07-00; online 2021-03-10]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Brain reactivity during aggressive response in women with premenstrual dysphoric disorder treated with a selective progesterone receptor modulator.
Kaltsouni E, Fisher PM, Dubol M, ..., Comasco E, Sundström-Poromaa I
Neuropsychopharmacology 46 (8) 1460-1467 [2021-07-00; online 2021-04-29]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
DNA Blocks the Lethal Effect of Human Beta-Defensin 2 Against Neisseria meningitidis.
Wassing GM, Lidberg K, Sigurlásdóttir S, ..., Jonas K, Jonsson AB
Front Microbiol 12 (-) 697232 [2021-06-30; online 2021-06-30]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Pesticide-induced multigenerational effects on amphibian reproduction and metabolism.
Karlsson O, Svanholm S, Eriksson A, ..., Jernerén F, Berg C
Sci. Total Environ. 775 (-) 145771 [2021-06-25; online 2021-02-11]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Accelerated regression-based summary statistics for discrete stochastic systems via approximate simulators.
Jiang RM, Wrede F, Singh P, Hellander A, Petzold LR
BMC Bioinformatics 22 (1) 339 [2021-06-23; online 2021-06-23]
Prashant Singh SciLifeLab Fellow
DOI Crossref
The Influence of Drug–Polymer Solubility on Laser-Induced In Situ Drug Amorphization Using Photothermal Plasmonic Nanoparticles
Hempel NJ, Merkl P, Knopp MM, ..., Sotiriou GA, Löbmann K
Pharmaceutics 13 (6) 917 [2021-06-21; online 2021-06-21]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Application of high-throughput 5'P sequencing for the study of co-translational mRNA decay.
Zhang Y, Pelechano V
STAR Protoc 2 (2) 100447 [2021-06-18; online 2021-03-31]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Multianalyte serology in home-sampled blood enables an unbiased assessment of the immune response against SARS-CoV-2.
Roxhed N, Bendes A, Dale M, ..., Fredolini C, Schwenk JM
Nat Commun 12 (1) 3695 [2021-06-17; online 2021-06-17]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Means, Motive, and Opportunity: Do Non-Islet-Reactive Infiltrating T Cells Contribute to Autoimmunity in Type 1 Diabetes?
Rodriguez-Calvo T, Christoffersson G, Bender C, ..., Kent SC, James EA
Front Immunol 12 (-) 683091 [2021-06-16; online 2021-06-16]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis.
Chen ZQ, Zan Y, Milesi P, ..., Lascoux M, Wu HX
Genome Biol. 22 (1) 179 [2021-06-13; online 2021-06-13]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
Utilizing Laser Activation of Photothermal Plasmonic Nanoparticles to Induce On-Demand Drug Amorphization inside a Tablet
Hempel NJ, Merkl P, Asad S, ..., Sotiriou GA, Löbmann K
Mol. Pharmaceutics 18 (6) 2254-2262 [2021-06-07; online 2021-05-05]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
The chaperonin CCT8 controls proteostasis essential for T cell maturation, selection, and function.
Oftedal BE, Maio S, Handel AE, ..., Maizels RM, Holländer GA
Commun Biol 4 (1) 681 [2021-06-03; online 2021-06-03]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Imaging of the Glucagon Receptor in Subjects with Type 2 Diabetes.
Eriksson O, Velikyan I, Haack T, ..., Tillner J, Wagner M
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 62 (6) 833-838 [2021-06-01; online 2020-10-23]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Unboxing mutations: Connecting mutation types with evolutionary consequences.
Berdan EL, Blanckaert A, Slotte T, ..., Westram AM, Fragata I
Mol. Ecol. 30 (12) 2710-2723 [2021-06-00; online 2021-05-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Towards policies that capture the expected value of biomolecular diversity for drug discovery, human health, and well-being.
Pesic M, Egamberdieva D, Kolodziejczyk B, ..., Neergheen VS, Kagansky A
Biol Futur 72 (2) 119-125 [2021-06-00; online 2020-09-07]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
More Than Just Letters and Chemistry: Genomics Goes Mechanics.
Deindl S, Elf J
Trends Biochem. Sci. 46 (6) 431-432 [2021-06-00; online 2021-04-12]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Chromogranin A regulates gut permeability via the antagonistic actions of its proteolytic peptides.
Muntjewerff EM, Tang K, Lutter L, ..., van den Bogaart G, Mahata SK
Acta Physiol 232 (2) e13655 [2021-06-00; online 2021-05-06]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Using TIF-Seq2 to investigate association between 5´ and 3´mRNA ends.
Li B, Marques S, Wang J, Pelechano V
Meth. Enzymol. 655 (-) 85-118 [2021-05-28; online 2021-05-28]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Perivascular Macrophages Regulate Blood Flow Following Tissue Damage.
Vågesjö E, Parv K, Ahl D, ..., Christoffersson G, Phillipson M
Circ. Res. 128 (11) 1694-1707 [2021-05-28; online 2021-04-21]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Phagocytosis and Efferocytosis by Resident Macrophages in the Mouse Pancreas.
Parv K, Westerlund N, Merchant K, ..., Lindsay RS, Christoffersson G
Front Endocrinol (Lausanne) 12 (-) 606175 [2021-05-25; online 2021-05-25]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives.
Bohutínská M, Vlček J, Yair S, ..., Slotte T, Kolář F
Proc. Natl. Acad. Sci. U.S.A. 118 (21) - [2021-05-25; online 2021-05-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
A combined approach for single-cell mRNA and intracellular protein expression analysis.
Reimegård J, Tarbier M, Danielsson M, ..., Friedländer MR, Gallant CJ
Commun Biol 4 (1) 624 [2021-05-25; online 2021-05-25]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
The human exposome and health in the Anthropocene.
Karlsson O, Rocklöv J, Lehoux AP, ..., Blunt MJ, Birnbaum LS
Int J Epidemiol 50 (2) 378-389 [2021-05-17; online 2020-12-23]
Oskar Karlsson SciLifeLab Fellow
DOI Crossref
A pipeline for systematic comparison of model levels and parameter inference settings applied to negative feedback gene regulation
Coulier A, Singh P, Sturrock M, Hellander A
- - (-) - [2021-05-17; online 2021-05-17]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Phylogenomic Insights into the Origin of Primary Plastids.
Irisarri I, Strassert JFH, Burki F
Syst. Biol. - (-) - [2021-05-14; online 2021-05-14]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds.
Buck M, Garcia SL, Fernandez L, ..., Bertilsson S, Peura S
Sci Data 8 (1) 131 [2021-05-14; online 2021-05-14]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Informing Pharmacokinetic Models With Physiological Data: Oral Population Modeling of L-Serine in Humans.
Bosley JR, Björnson E, Zhang C, ..., Borén J, Mardinoglu A
Front. Pharmacol. 12 (-) 643179 [2021-05-13; online 2021-05-13]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production
Kang D, Shoaie S, Jacquiod S, Sørensen SJ, Ledesma-Amaro R
Microorganisms 9 (5) 1042 [2021-05-12; online 2021-05-12]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Freshwater Chlorobia Exhibit Metabolic Specialization among Cosmopolitan and Endemic Populations.
Garcia SL, Mehrshad M, Buck M, ..., Greening C, Peura S
mSystems 6 (3) - [2021-05-11; online 2021-05-11]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
The Genomic Architecture and Evolutionary Fates of Supergenes.
Gutiérrez-Valencia J, Hughes PW, Berdan EL, Slotte T
Genome Biol Evol 13 (5) - [2021-05-07; online 2021-03-20]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Environmental Enrichment Induces Epigenomic and Genome Organization Changes Relevant for Cognition.
Espeso-Gil S, Holik AZ, Bonnin S, ..., Hor CN, Ossowski S
Front Mol Neurosci 14 (-) 664912 [2021-05-05; online 2021-05-05]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
The Chaperonin GroESL Facilitates Caulobacter crescentus Cell Division by Supporting the Functions of the Z-Ring Regulators FtsA and FzlA.
Schroeder K, Heinrich K, Neuwirth I, Jonas K
MBio 12 (3) - [2021-05-04; online 2021-05-04]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Cannabidiol inhibits the skeletal muscle Nav1.4 by blocking its pore and by altering membrane elasticity.
Ghovanloo MR, Choudhury K, Bandaru TS, ..., Goodchild SJ, Ruben PC
J. Gen. Physiol. 153 (5) - [2021-05-03; online 2021-04-10]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Volumetric live cell imaging with three-dimensional parallelized RESOLFT microscopy.
Bodén A, Pennacchietti F, Coceano G, ..., Ratz M, Testa I
Nat. Biotechnol. 39 (5) 609-618 [2021-05-00; online 2021-01-11]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Epithelium-autonomous NAIP/NLRC4 prevents TNF-driven inflammatory destruction of the gut epithelial barrier in Salmonella-infected mice.
Fattinger SA, Geiser P, Samperio Ventayol P, ..., Hardt WD, Sellin ME
Mucosal Immunol 14 (3) 615-629 [2021-05-00; online 2021-03-17]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Can molecular dynamics simulations improve the structural accuracy and virtual screening performance of GPCR models?
Kapla J, Rodríguez-Espigares I, Ballante F, Selent J, Carlsson J
PLoS Comput Biol 17 (5) e1008936 [2021-05-00; online 2021-05-13]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
The Protein Quality Control Network in Caulobacter crescentus.
Schroeder K, Jonas K
Front Mol Biosci 8 (-) 682967 [2021-04-30; online 2021-04-30]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Informing NMR experiments with molecular dynamics simulations to characterize the dominant activated state of the KcsA ion channel.
Pérez-Conesa S, Keeler EG, Zhang D, Delemotte L, McDermott AE
J Chem Phys 154 (16) 165102 [2021-04-28; online 2021-05-05]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
How Does Liquid-Liquid Phase Separation in Model Membranes Reflect Cell Membrane Heterogeneity?
Sych T, Gurdap CO, Wedemann L, Sezgin E
Membranes (Basel) 11 (5) - [2021-04-28; online 2021-04-28]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Bacterial detection by NAIP/NLRC4 elicits prompt contractions of intestinal epithelial cell layers.
Samperio Ventayol P, Geiser P, Di Martino ML, ..., Eriksson J, Sellin ME
Proc. Natl. Acad. Sci. U.S.A. 118 (16) - [2021-04-20; online 2021-04-14]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Scalable machine learning-assisted model exploration and inference using Sciope.
Singh P, Wrede F, Hellander A
Bioinformatics 37 (2) 279-281 [2021-04-19; online 2020-07-25]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions.
Vihervaara A, Mahat DB, Himanen SV, ..., Lis JT, Sistonen L
Mol. Cell 81 (8) 1715-1731.e6 [2021-04-15; online 2021-03-29]
Anniina Vihervaara SciLifeLab Fellow
PubMed DOI Crossref
A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation.
Regadas I, Dahlberg O, Vaid R, ..., Wen J, Mannervik M
Mol. Cell 81 (8) 1766-1780.e10 [2021-04-15; online 2021-02-24]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
DNA methylation in cord blood in association with prenatal depressive symptoms.
Kallak TK, Bränn E, Fransson E, ..., Lyle R, Skalkidou A
Clin Epigenetics 13 (1) 78 [2021-04-12; online 2021-04-12]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Resin-acid derivatives bind to multiple sites on the voltage-sensor domain of the Shaker potassium channel.
Silverå Ejneby M, Gromova A, Ottosson NE, ..., Elinder F, Delemotte L
J. Gen. Physiol. 153 (4) - [2021-04-05; online 2021-03-09]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Genome Size Reduction and Transposon Activity Impact tRNA Gene Diversity While Ensuring Translational Stability in Birds.
Ottenburghs J, Geng K, Suh A, Kutter C
Genome Biol Evol 13 (4) - [2021-04-05; online 2021-02-04]
Claudia Kutter SciLifeLab Fellow
DOI Crossref
High-throughput 5′P sequencing enables the study of degradation-associated ribosome stalls
Zhang Y, Pelechano V
Cell Reports Methods 1 (1) 100001 [2021-04-02]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic.
Nowak MD, Birkeland S, Mandáková T, ..., Lysak MA, Brochmann C
Mol Ecol Resour 21 (3) 661-676 [2021-04-00; online 2020-11-12]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
A genomic catalog of Earth's microbiomes.
Nayfach S, Roux S, Seshadri R, ..., Kyrpides NC, Eloe-Fadrosh EA
Nat. Biotechnol. 39 (4) 499-509 [2021-04-00; online 2020-11-09]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
A molecular timescale for eukaryote evolution with implications for the origin of red algal-derived plastids.
Strassert JFH, Irisarri I, Williams TA, Burki F
Nat Commun 12 (1) 1879 [2021-03-25; online 2021-03-25]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Addressing the heterogeneity in liver diseases using biological networks.
Lam S, Doran S, Yuksel HH, ..., Uhlen M, Mardinoglu A
Brief. Bioinformatics 22 (2) 1751-1766 [2021-03-22; online 2020-03-24]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
The GenTree Platform: growth traits and tree-level environmental data in 12 European forest tree species.
Opgenoorth L, Dauphin B, Benavides R, ..., Aravanopoulos FA, Cavers S
Gigascience 10 (3) - [2021-03-18; online 2021-03-19]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
High Expression of LINC01268 is Positively Associated with Hepatocellular Carcinoma Progression via Regulating MAP3K7.
Jin X, Fu W, Li D, ..., Kutter C, Li Y
Onco Targets Ther 14 (-) 1753-1769 [2021-03-08; online 2021-03-08]
Claudia Kutter SciLifeLab Fellow
DOI Crossref
ZFP207 <i>controls pluripotency by multiple post-transcriptional mechanisms</i>
Malla S, Bhattarai DP, Melguizo-Sanchis D, ..., Kutter C, Aguilo F
- - (-) - [2021-03-02; online 2021-03-02]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Ulipristal Acetate for Treatment of Premenstrual Dysphoric Disorder: A Proof-of-Concept Randomized Controlled Trial
Comasco E, Kopp Kallner H, Bixo M, ..., Epperson CN, Sundström-Poromaa I
AJP 178 (3) 256-265 [2021-03-01; online 2021-03-01]
Erika Comasco SciLifeLab Fellow
DOI Crossref
The GenTree Leaf Collection: Inter‐ and intraspecific leaf variation in seven forest tree species in Europe
Benavides R, Carvalho B, Bastias CC, ..., Fady B, Valladares F
Global Ecol. Biogeogr. 30 (3) 590-597 [2021-03-00; online 2021-01-06]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease
Rosario D, Bidkhori G, Lee S, ..., Mardinoglu A, Shoaie S
Cell Reports 34 (9) 108807 [2021-03-00; online 2021-03-00]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
3D-printing of solid lipid tablets from emulsion gels
Johannesson J, Khan J, Hubert M, Teleki A, Bergström CAS
Int J Pharm 597 (-) 120304 [2021-03-00; online 2021-03-00]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Spatial Regulation of T-Cell Signaling by Programmed Death-Ligand 1 on Wireframe DNA Origami Flat Sheets.
Fang T, Alvelid J, Spratt J, ..., Testa I, Teixeira AI
ACS Nano 15 (2) 3441-3452 [2021-02-23; online 2021-02-08]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Chenodeoxycholic Acid Modulates Bile Acid Synthesis Independent of Fibroblast Growth Factor 19 in Primary Human Hepatocytes.
Johansson H, Søndergaard JN, Jorns C, Kutter C, Ellis ECS
Front Endocrinol (Lausanne) 11 (-) 554922 [2021-02-22; online 2021-02-22]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Defective ALC1 nucleosome remodeling confers PARPi sensitization and synthetic lethality with HRD.
Hewitt G, Borel V, Segura-Bayona S, ..., Deindl S, Boulton SJ
Mol. Cell 81 (4) 767-783.e11 [2021-02-18; online 2020-12-16]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.
Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E
Nature 590 (7847) 649-654 [2021-02-00; online 2021-02-24]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data.
Sahlin K, Lim MCW, Prost S
Ecol Evol 11 (3) 1392-1398 [2021-02-00; online 2021-01-11]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Model membrane systems to reconstitute immune cell signaling.
Céspedes PF, Beckers D, Dustin ML, Sezgin E
FEBS J. 288 (4) 1070-1090 [2021-02-00; online 2020-08-03]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm.
Dziasek K, Simon L, Lafon-Placette C, ..., Slotte T, Köhler C
PLoS Genet 17 (2) e1009370 [2021-02-00; online 2021-02-11]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Epithelial inflammasomes in the defense against Salmonella gut infection.
Fattinger SA, Sellin ME, Hardt WD
Curr Opin Microbiol 59 (-) 86-94 [2021-02-00; online 2020-10-28]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Comparison of two arylsulfatases for targeted mass spectrometric analysis of microbiota-derived metabolites
Jain A, Correia MSP, Meistermann H, ..., Löhr JM, Globisch D
J Pharm Biomed Anal 195 (-) 113818 [2021-02-00; online 2021-02-00]
Daniel Globisch SciLifeLab Fellow
DOI Crossref
Character and environmental lability of cyanobacteria‐derived dissolved organic matter
Patriarca C, Sedano‐Núñez VT, Garcia SL, ..., Tranvik LJ, Hawkes JA
Limnol. Oceanogr. 66 (2) 496-509 [2021-02-00; online 2020-10-09]
Sarahi Garcia SciLifeLab Fellow
DOI Crossref
Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia
Harzandi A, Lee S, Bidkhori G, ..., Shoaie S, Sharpe CC
iScience 24 (2) 102046 [2021-02-00; online 2021-02-00]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Epidemiological modeling in StochSS Live!
Jiang R, Jacob B, Geiger M, ..., Hellander A, Petzold L
Bioinformatics - (-) - [2021-01-29; online 2021-01-29]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Identification of ligand-specific G protein-coupled receptor states and prediction of downstream efficacy via data-driven modeling.
Fleetwood O, Carlsson J, Delemotte L
Elife 10 (-) - [2021-01-28; online 2021-01-28]
Jens Carlsson Lucie Delemotte SciLifeLab Fellow
DOI Crossref
Cellocity: A Python package for analysis of confluent cell layer dynamics
Eriksson J, Styrström D, Sellin M
JOSS 6 (57) 2818 [2021-01-28; online 2021-01-28]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Discovery of Functional Alternatively Spliced PKM Transcripts in Human Cancers.
Li X, Kim W, Arif M, ..., Zhang C, Mardinoglu A
Cancers (Basel) 13 (2) - [2021-01-19; online 2021-01-19]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Direct detection of SARS-CoV-2 using non-commercial RT-LAMP reagents on heat-inactivated samples.
Alekseenko A, Barrett D, Pareja-Sanchez Y, ..., Yin X, Pelechano V
Sci Rep 11 (1) 1820 [2021-01-19; online 2021-01-19]
SciLifeLab Fellow Simon Elsässer Vicent Pelechano
PubMed DOI Crossref
Single-Molecule, Super-Resolution, and Functional Analysis of G Protein-Coupled Receptor Behavior Within the T Cell Immunological Synapse.
Felce JH, Parolini L, Sezgin E, ..., Frater J, Dustin ML
Front Cell Dev Biol 8 (-) 608484 [2021-01-18; online 2021-01-18]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Nradd Acts as a Negative Feedback Regulator of Wnt/β-Catenin Signaling and Promotes Apoptosis.
Ozalp O, Cark O, Azbazdar Y, ..., Sezgin E, Ozhan G
Biomolecules 11 (1) - [2021-01-14; online 2021-01-14]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Salmonella enterica Serovar Typhimurium Exploits Cycling through Epithelial Cells To Colonize Human and Murine Enteroids.
Geiser P, Di Martino ML, Samperio Ventayol P, ..., Hellström PM, Sellin ME
MBio 12 (1) - [2021-01-12; online 2021-01-12]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae.
Rodríguez-Galán O, García-Gómez JJ, Rosado IV, ..., Kressler D, de la Cruz J
Nucleic Acids Res. 49 (1) 206-220 [2021-01-11; online 2020-12-18]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Obese mother offspring have hepatic lipidic modulation that contributes to sex-dependent metabolic adaptation later in life.
Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M
Commun Biol 4 (1) 14 [2021-01-04; online 2021-01-04]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.
Sahlin K, Medvedev P
Nat Commun 12 (1) 2 [2021-01-04; online 2021-01-04]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
The effect of Toll-like receptor stimulation on the motility of regulatory T cells.
Chodaczek G, Pagni PP, Christoffersson G, ..., Wegrzyn AS, von Herrath M
J. Autoimmun. 116 (-) 102563 [2021-01-00; online 2020-11-12]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Systems biology based drug repositioning for development of cancer therapy.
Turanli B, Altay O, Borén J, ..., Arga KY, Mardinoglu A
Semin. Cancer Biol. 68 (-) 47-58 [2021-01-00; online 2019-09-27]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Proteomics-Informed Identification of Luminal Targets For In Situ Diagnosis of Inflammatory Bowel Disease.
Asad S, Wegler C, Ahl D, ..., Artursson P, Teleki A
J Pharm Sci 110 (1) 239-250 [2021-01-00; online 2020-11-04]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
News ways of understanding the complex biology of diabetes using PET.
Eriksson O, Långström B, Antoni G
Nucl. Med. Biol. 92 (-) 65-71 [2021-01-00; online 2020-04-27]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Neuroimaging the menstrual cycle: A multimodal systematic review.
Dubol M, Epperson CN, Sacher J, ..., Sundström-Poromaa I, Comasco E
Front Neuroendocrinol 60 (-) 100878 [2021-01-00; online 2020-10-22]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality.
Stebbing J, Sánchez Nievas G, Falcone M, ..., Abizanda P, Lauschke VM
Sci Adv 7 (1) - [2021-01-00; online 2021-01-01]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Ligand design by targeting a binding site water
Matricon P, Suresh RR, Gao ZG, ..., Jacobson KA, Carlsson J
Chem Sci 12 (3) 960-968 [2021-00-00; online 2021-00-00]
Jens Carlsson SciLifeLab Fellow
DOI Crossref
Investigation of the individual human sulfatome in plasma and urine samples reveals an age-dependency
Correia MSP, Thapa B, Vujasinovic M, Löhr JM, Globisch D
RSC Adv. 11 (55) 34788-34794 [2021-00-00; online 2021-00-00]
Daniel Globisch SciLifeLab Fellow

Year 2020

PubMed DOI Crossref
5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA.
Kugelberg U, Nätt D, Skog S, Kutter C, Öst A
RNA Biol - (-) 1-12 [2020-12-31; online 2020-12-31]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Mechanistic Insights into Regulation of the ALC1 Remodeler by the Nucleosome Acidic Patch.
Lehmann LC, Bacic L, Hewitt G, ..., Boulton SJ, Deindl S
Cell Reports 33 (12) 108529 [2020-12-22; online 2020-12-29]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Ancient microRNA profiles of a 14,300-year-old canid samples confirm taxonomic origin and give glimpses into tissue-specific gene regulation from the Pleistocene.
Fromm B, Tarbier M, Smith O, ..., Gilbert TP, Friedlander MR
RNA - (-) - [2020-12-15; online 2020-12-15]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Automated Removal of Non-homologous Sequence Stretches with PREQUAL.
Irisarri I, Burki F, Whelan S
Methods in molecular biology (Clifton, N.J.) 2231 (-) 147-162 [2020-12-09; online 2020-12-09]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Circulating miRNA Spaceflight Signature Reveals Targets for Countermeasure Development.
Malkani S, Chin CR, Cekanaviciute E, ..., Mason CE, Beheshti A
Cell Reports 33 (10) 108448 [2020-12-08; online 2020-11-25]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Recent advances in single-molecule fluorescence microscopy render structural biology dynamic
Bacic L, Sabantsev A, Deindl S
Current Opinion in Structural Biology 65 (-) 61-68 [2020-12-00; online 2020-12-00]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.
Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N
Nat Protoc 15 (12) 3894-3941 [2020-12-00; online 2020-11-02]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Distinct pre-initiation steps in human mitochondrial translation
Khawaja A, Itoh Y, Remes C, ..., Amunts A, Rorbach J
Nat Commun 11 (1) - [2020-12-00; online 2020-06-10]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Calmodulin acts as a state-dependent switch to control a cardiac potassium channel opening.
Kang PW, Westerlund AM, Shi J, ..., Delemotte L, Cui J
Sci Adv 6 (50) - [2020-12-00; online 2020-12-11]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun 11 (1) - [2020-12-00; online 2020-10-14]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Universal Single-Residue Terminal Labels for Fluorescent Live Cell Imaging of Microproteins.
Lafranchi L, Schlesinger D, Kimler KJ, Elsässer SJ
Journal of the American Chemical Society 142 (47) 20080-20087 [2020-11-25; online 2020-11-11]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Improved computational analysis of ribosome dynamics from 5′P degradome data using fivepseq
Nersisyan L, Ropat M, Pelechano V
NAR Genomics and Bioinformatics 2 (4) - [2020-11-24; online 2020-11-24]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Low Shear Stress Increases Recombinant Protein Production and High Shear Stress Increases Apoptosis in Human Cells.
Zhan C, Bidkhori G, Schwarz H, ..., Rockberg J, Chotteau V
iScience 23 (11) 101653 [2020-11-20; online 2020-10-07]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Comparative dietary sulfated metabolome analysis reveals unknown metabolic interactions of the gut microbiome and the human host.
Correia MSP, Jain A, Alotaibi W, ..., Rodriguez-Mateos A, Globisch D
Free Radic. Biol. Med. 160 (-) 745-754 [2020-11-20; online 2020-09-11]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Amino Acid Modified RNA Bases as Building Blocks of an Early Earth RNA-Peptide World.
Nainytė M, Müller F, Ganazzoli G, ..., Globisch D, Carell T
Chemistry 26 (65) 14856-14860 [2020-11-20; online 2020-10-14]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Lipoprotein Particles Interact with Membranes and Transfer Their Cargo without Receptors
Plochberger B, Sych T, Weber F, ..., Stangl H, Sezgin E
Biochemistry 59 (45) 4421-4428 [2020-11-17; online 2020-11-04]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Redesigning Solvatochromic Probe Laurdan for Imaging Lipid Order Selectively in Cell Plasma Membranes.
Danylchuk DI, Sezgin E, Chabert P, Klymchenko AS
Anal. Chem. 92 (21) 14798-14805 [2020-11-03; online 2020-10-12]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Tracking the motion of the KV 1.2 voltage sensor reveals the molecular perturbations caused by a de novo mutation in a case of epilepsy.
Pantazis A, Kaneko M, Angelini M, ..., Saitta SC, Olcese R
J. Physiol. (Lond.) 598 (22) 5245-5269 [2020-11-00; online 2020-09-21]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Quantification of aromatase binding in the female human brain using [11 C]cetrozole positron emission tomography.
Jonasson M, Nordeman P, Eriksson J, ..., Lubberink M, Comasco E
J Neurosci Res 98 (11) 2208-2218 [2020-11-00; online 2020-08-06]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Perfluorooctane sulfonate (PFOS) and perfluorooctanoic acid (PFOA) induce epigenetic alterations and promote human breast cell carcinogenesis in vitro.
Pierozan P, Cattani D, Karlsson O
Arch. Toxicol. 94 (11) 3893-3906 [2020-11-00; online 2020-07-22]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome
Ehrenbolger K, Jespersen N, Sharma H, ..., Vossbrinck CR, Barandun J
PLoS Biol. 18 (10) e3000958 [2020-10-30; online 2020-10-30]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Potential Anticancer Effect of Carvacrol Codrugs on Human Glioblastoma Cells.
Yazici A, Marinelli L, Cacciatore I, ..., Mardinoğlu A, Türkez H
Curr Drug Deliv 18 (3) 350-356 [2020-10-29; online 2020-10-29]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Fluidity and Lipid Composition of Membranes of Peroxisomes, Mitochondria and the ER From Oleic Acid-Induced Saccharomyces cerevisiae
Reglinski K, Steinfort-Effelsberg L, Sezgin E, ..., Eggeling C, Erdmann R
Front Cell Dev Biol 8 (-) 574363 [2020-10-29; online 2020-10-29]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.
Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR
Nat Commun 11 (1) 5445 [2020-10-28; online 2020-10-28]
Magda Bienko Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Hippocampal neural stem cells are more susceptible to the neurotoxin BMAA than primary neurons: effects on apoptosis, cellular differentiation, neurite outgrowth, and DNA methylation.
Pierozan P, Cattani D, Karlsson O
Cell Death Dis 11 (10) 910 [2020-10-24; online 2020-10-24]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization.
Flygaard RK, Mühleip A, Tobiasson V, Amunts A
Nat Commun 11 (1) 5342 [2020-10-22; online 2020-10-22]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Rapid Preparation of a Large Sulfated Metabolite Library for Structure Validation in Human Samples.
Correia MSP, Lin W, Aria AJ, Jain A, Globisch D
Metabolites 10 (10) 415 [2020-10-16; online 2020-10-16]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Network analysis reveals how lipids and other cofactors influence membrane protein allostery.
Westerlund AM, Fleetwood O, Pérez-Conesa S, Delemotte L
J Chem Phys 153 (14) 141103 [2020-10-14; online 2020-10-23]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
The Next Generation of Pattern Recognition Receptor Agonists: Improving Response Rates in Cancer Immunotherapy
O’ Donovan DH, Mao Y, Mele DA
Current medicinal chemistry 27 (34) 5654-5674 [2020-10-11; online 2020-10-11]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes.
Wang J, Li B, Marques S, ..., Wei W, Pelechano V
Nucleic Acids Res. 48 (18) e104 [2020-10-09; online 2020-08-21]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
An embryonic stem cell-specific heterochromatin state promotes core histone exchange in the absence of DNA accessibility.
Navarro C, Lyu J, Katsori AM, Caridha R, Elsässer SJ
Nat Commun 11 (1) 5095 [2020-10-09; online 2020-10-09]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Receptor occupancy of dual glucagon-like peptide 1/glucagon receptor agonist SAR425899 in individuals with type 2 diabetes.
Eriksson O, Haack T, Hijazi Y, ..., Wagner M, Tillner J
Sci Rep 10 (1) 16758 [2020-10-07; online 2020-10-07]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella.
Dong Y, Majda M, Šimura J, ..., Smith RS, Østergaard L
Curr. Biol. 30 (19) 3880-3888.e5 [2020-10-05; online 2020-08-13]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Progesterone - Friend or foe?
Sundström-Poromaa I, Comasco E, Sumner R, Luders E
Front Neuroendocrinol 59 (-) 100856 [2020-10-00; online 2020-07-28]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Male swarming aggregation pheromones increase female attraction and mating success among multiple African malaria vector mosquito species.
Mozūraitis R, Hajkazemian M, Zawada JW, ..., Borg-Karlson AK, Emami SN
Nat Ecol Evol 4 (10) 1395-1401 [2020-10-00; online 2020-08-03]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M
Nat. Biotechnol. 38 (10) 1184-1193 [2020-10-00; online 2020-05-25]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review.
Lorenc A, Hamilton-Shield J, Perry R, Stevens M, CTYA HSCT Adipose and Muscle Late Effects Working Group
J Cancer Surviv 14 (5) 624-642 [2020-10-00; online 2020-07-18]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts.
Mondav R, Bertilsson S, Buck M, ..., Lindström ES, Garcia SL
mSystems 5 (5) - [2020-09-29; online 2020-09-29]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Discovery of Proteolysis-Targeting Chimera Molecules that Selectively Degrade the IRAK3 Pseudokinase.
Degorce SL, Tavana O, Banks E, ..., Yang B, Edmondson SD
J Med Chem 63 (18) 10460-10473 [2020-09-24; online 2020-09-14]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning.
Mohammadi E, Benfeitas R, Turkez H, ..., Uhlen M, Mardinoglu A
Cancers (Basel) 12 (9) - [2020-09-21; online 2020-09-21]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.
Vaga S, Lee S, Ji B, ..., Engstrand L, Shoaie S
Sci Rep 10 (1) 14977 [2020-09-11; online 2020-09-11]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions.
Proffitt C, Bidkhori G, Moyes D, Shoaie S
Microorganisms 8 (9) 1381 [2020-09-09; online 2020-09-09]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integration of molecular profiles in a longitudinal wellness profiling cohort.
Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L
Nat Commun 11 (1) 4487 [2020-09-08; online 2020-09-08]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
The RNA exosome shapes the expression of key protein-coding genes.
Wu M, Karadoulama E, Lloret-Llinares M, ..., Jensen TH, Sandelin A
Nucleic Acids Res. 48 (15) 8509-8528 [2020-09-04; online 2020-07-28]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome.
Son JW, Shoaie S, Lee S
Endocrinol Metab (Seoul) 35 (3) 507-514 [2020-09-00; online 2020-09-22]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
PhenoChip: A single-cell phenomic platform for high-throughput photophysiological analyses of microalgae.
Behrendt L, Salek MM, Trampe EL, ..., Kühl M, Stocker R
Sci Adv 6 (36) eabb2754 [2020-09-00; online 2020-09-02]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
Perspectives from Ten Years of Protist Studies by High-Throughput Metabarcoding.
Santoferrara L, Burki F, Filker S, ..., Dunthorn M, McManus GB
J. Eukaryot. Microbiol. 67 (5) 612-622 [2020-09-00; online 2020-07-02]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Structural basis of mitochondrial translation.
Aibara S, Singh V, Modelska A, Amunts A
Elife 9 (-) - [2020-08-19; online 2020-08-19]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Unexpected Acetylation of Endogenous Aliphatic Amines by Arylamine N-Acetyltransferase NAT2.
Conway LP, Rendo V, Correia MSP, ..., Sjöblom T, Globisch D
Angew. Chem. Int. Ed. Engl. 59 (34) 14342-14346 [2020-08-17; online 2020-07-08]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Drug Repositioning for P-Glycoprotein Mediated Co-Expression Networks in Colorectal Cancer.
Beklen H, Gulfidan G, Arga KY, Mardinoglu A, Turanli B
Front Oncol 10 (-) 1273 [2020-08-13; online 2020-08-13]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Transcriptional mutagenesis dramatically alters genome-wide p53 transactivation landscape.
Liang S, Ezerskyte M, Wang J, Pelechano V, Dreij K
Sci Rep 10 (1) 13513 [2020-08-11; online 2020-08-11]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Super-resolution RESOLFT microscopy of lipid bilayers using a fluorophore-switch dyad.
Frawley AT, Wycisk V, Xiong Y, ..., Eggeling C, Anderson HL
Chem Sci 11 (33) 8955-8960 [2020-08-10; online 2020-08-10]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Human RTEL1 associates with Poldip3 to facilitate responses to replication stress and R-loop resolution.
Björkman A, Johansen SL, Lin L, ..., Bartek J, Schou KB
Genes Dev. 34 (15-16) 1065-1074 [2020-08-01; online 2020-06-19]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
The cyanobacterial neurotoxin β-N-methylamino-L-alanine (BMAA) targets the olfactory bulb region.
Pierozan P, Piras E, Brittebo E, Karlsson O
Arch. Toxicol. 94 (8) 2799-2808 [2020-08-00; online 2020-05-20]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Predatory colponemids are the sister group to all other alveolates.
Tikhonenkov DV, Strassert JFH, Janouškovec J, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 149 (-) 106839 [2020-08-00; online 2020-04-21]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Neuroprotective effects of boron nitride nanoparticles in the experimental Parkinson's disease model against MPP+ induced apoptosis.
Küçükdoğru R, Türkez H, Arslan ME, ..., Cacciatore I, Di Stefano A
Metab Brain Dis 35 (6) 947-957 [2020-08-00; online 2020-03-25]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Interference with pancreatic sympathetic signaling halts the onset of diabetes in mice.
Christoffersson G, Ratliff SS, von Herrath MG
Sci Adv 6 (35) eabb2878 [2020-08-00; online 2020-08-26]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Human ovarian cancer intrinsic mechanisms regulate lymphocyte activation in response to immune checkpoint blockade.
Natoli M, Bonito N, Robinson JD, Ghaem-Maghami S, Mao Y
Cancer Immunol. Immunother. 69 (8) 1391-1401 [2020-08-00; online 2020-03-21]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
GPCRmd uncovers the dynamics of the 3D-GPCRome.
Rodríguez-Espigares I, Torrens-Fontanals M, Tiemann JKS, ..., Guixà-González R, Selent J
Nat. Methods 17 (8) 777-787 [2020-08-00; online 2020-07-13]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Apparent stiffness of vimentin intermediate filaments in living cells and its relation with other cytoskeletal polymers.
Smoler M, Coceano G, Testa I, Bruno L, Levi V
Biochim Biophys Acta Mol Cell Res 1867 (8) 118726 [2020-08-00; online 2020-04-19]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Automated GMP-Compliant Production of [68Ga]Ga-DO3A-Tuna-2 for PET Microdosing Studies of the Glucagon Receptor in Humans.
Wagner M, Doverfjord JG, Tillner J, ..., Eriksson O, Velikyan I
Pharmaceuticals (Basel, Switzerland) 13 (8) 176 [2020-07-31; online 2020-07-31]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Current Status of COVID-19 Therapies and Drug Repositioning Applications.
Altay O, Mohammadi E, Lam S, ..., Uhlen M, Mardinoglu A
iScience 23 (7) 101303 [2020-07-24; online 2020-06-20]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases.
Rosario D, Boren J, Uhlen M, ..., Mardinoglu A, Shoaie S
Front Neurosci 14 (-) 716 [2020-07-08; online 2020-07-08]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Pulsed Electric Fields Can Create Pores in the Voltage Sensors of Voltage-Gated Ion Channels.
Rems L, Kasimova MA, Testa I, Delemotte L
Biophys. J. 119 (1) 190-205 [2020-07-07; online 2020-06-08]
Ilaria Testa Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Rapid Detection of COVID-19 Coronavirus Using a Reverse Transcriptional Loop-Mediated Isothermal Amplification (RT-LAMP) Diagnostic Platform.
Yu L, Wu S, Hao X, ..., Chen WH, Yin X
Clin. Chem. 66 (7) 975-977 [2020-07-01; online 2020-04-22]
SciLifeLab Fellow Vicent Pelechano
DOI Crossref
EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotic life
Richter DJ, Berney C, Strassert JFH, Burki F, de Vargas C
- - (-) - [2020-07-01; online 2020-07-01]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Quo vadis microRNAs?
Fromm B, Keller A, Yang X, ..., Peterson KJ, Griffiths-Jones S
Trends in Genetics 36 (7) 461-463 [2020-07-00; online 2020-04-16]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Influenza A viruses use multivalent sialic acid clusters for cell binding and receptor activation.
Sieben C, Sezgin E, Eggeling C, Manley S
PLoS Pathog 16 (7) e1008656 [2020-07-00; online 2020-07-08]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
DNA surface exploration and operator bypassing during target search.
Marklund E, van Oosten B, Mao G, ..., Elf J, Deindl S
Nature 583 (7818) 858-861 [2020-07-00; online 2020-06-24]
Daniel Globisch SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
A systems biology approach for studying neurodegenerative diseases.
Lam S, Bayraktar A, Zhang C, ..., Uhlen M, Mardinoglu A
Drug Discov. Today 25 (7) 1146-1159 [2020-07-00; online 2020-05-19]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Skeletal Muscle Transcriptomic Comparison between Long-Term Trained and Untrained Men and Women.
Chapman MA, Arif M, Emanuelsson EB, ..., Mardinoglu A, Sundberg CJ
Cell Reports 31 (12) 107808 [2020-06-23; online 2020-06-25]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Site-Specific Incorporation of Two ncAAs for Two-Color Bioorthogonal Labeling and Crosslinking of Proteins on Live Mammalian Cells.
Meineke B, Heimgärtner J, Eirich J, Landreh M, Elsässer SJ
Cell Reports 31 (12) 107811 [2020-06-23; online 2020-06-25]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Successful delivery of large-size CRISPR/Cas9 vectors in hard-to-transfect human cells using small plasmids.
Søndergaard JN, Geng K, Sommerauer C, ..., Yin X, Kutter C
Commun Biol 3 (1) 319 [2020-06-19; online 2020-06-19]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Adipose tissue morphology, imaging and metabolomics predicting cardiometabolic risk and family history of type 2 diabetes in non-obese men.
Rawshani A, Eliasson B, Rawshani A, ..., Rosengren A, Smith U
Sci Rep 10 (1) 9973 [2020-06-19; online 2020-06-19]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation.
Tobiasson V, Amunts A
Elife 9 (-) e59264 [2020-06-18; online 2020-06-18]
Alexey Amunts SciLifeLab Fellow
DOI Crossref
Chaining with Overlaps Revisited
Sahlin K, Mäkinen V
31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020) 161 (-) 25:1--25:12 [2020-06-09; online 2020-06-09]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Sensitive mass spectrometric analysis of carbonyl metabolites in human urine and fecal samples using chemoselective modification.
Lin W, Conway LP, Block A, ..., Löhr JM, Globisch D
Analyst 145 (11) 3822-3831 [2020-06-07; online 2020-05-12]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Plasma membranes are asymmetric in lipid unsaturation, packing and protein shape.
Lorent JH, Levental KR, Ganesan L, ..., Lyman E, Levental I
Nat. Chem. Biol. 16 (6) 644-652 [2020-06-00; online 2020-05-04]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Improvement in the Current Therapies for Hepatocellular Carcinoma Using a Systems Medicine Approach.
Ozcan M, Altay O, Lam S, ..., Boren J, Mardinoglu A
Adv Biosyst 4 (6) e2000030 [2020-06-00; online 2020-04-08]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes.
Hausmann A, Russo G, Grossmann J, ..., Sellin ME, Hardt WD
Cell. Microbiol. 22 (6) e13191 [2020-06-00; online 2020-03-04]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Dose and time effects of solar-simulated ultraviolet radiation on the in vivo human skin transcriptome.
Bustamante M, Hernandez-Ferrer C, Tewari A, ..., Nieuwenhuijsen M, Young AR
Br. J. Dermatol. 182 (6) 1458-1468 [2020-06-00; online 2019-11-27]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Intrinsic Dissolution Rate Profiling of Poorly Water-Soluble Compounds in Biorelevant Dissolution Media.
Teleki A, Nylander O, Bergström CAS
Pharmaceutics 12 (6) 493 [2020-05-28; online 2020-05-28]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Shift in ecological strategy helps marginal populations of shepherd's purse (Capsella bursa-pastoris) to overcome a high genetic load.
Orsucci M, Milesi P, Hansen J, ..., Glémin S, Lascoux M
Proc. Biol. Sci. 287 (1927) 20200463 [2020-05-27; online 2020-05-20]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis.
Thomas QA, Ard R, Liu J, ..., Pelechano V, Marquardt S
Nat Commun 11 (1) 2589 [2020-05-22; online 2020-05-22]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Integrating the "Immunome" in the Stratification of Myelodysplastic Syndromes and Future Clinical Trial Design.
Winter S, Shoaie S, Kordasti S, Platzbecker U
J Clin Oncol 38 (15) 1723-1735 [2020-05-20; online 2020-02-14]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
z-STED Imaging and Spectroscopy to Investigate Nanoscale Membrane Structure and Dynamics.
Barbotin A, Urbančič I, Galiani S, ..., Booth M, Sezgin E
Biophys. J. 118 (10) 2448-2457 [2020-05-19; online 2020-04-16]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Histidyl-Proline Diketopiperazine Isomers as Multipotent Anti-Alzheimer Drug Candidates.
Turkez H, Cacciatore I, Arslan ME, ..., Di Stefano A, Mardinoglu A
Biomolecules 10 (5) 737 [2020-05-09; online 2020-05-09]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Predicting resolution and image quality in RESOLFT and other point scanning microscopes [Invited].
Bodén A, Casas Moreno X, Cooper BK, York AG, Testa I
Biomed Opt Express 11 (5) 2313-2327 [2020-05-01; online 2020-04-02]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Differential Expression of Immune Genes between Two Closely Related Beetle Species with Different Immunocompetence following Attack by Asecodes parviclava.
Yang X, Fors L, Slotte T, ..., Wheat CW, Hambäck PA
Genome Biol Evol 12 (5) 522-534 [2020-05-01; online 2020-04-14]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Salmonella Typhimurium discreet-invasion of the murine gut absorptive epithelium.
Fattinger SA, Böck D, Di Martino ML, ..., Hardt WD, Sellin ME
PLoS Pathog 16 (5) e1008503 [2020-05-00; online 2020-05-04]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression.
Hausmann A, Böck D, Geiser P, ..., Sellin ME, Hardt WD
Mucosal Immunol 13 (3) 530-544 [2020-05-00; online 2020-01-17]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Genome-Scale Metabolic Modeling of Glioblastoma Reveals Promising Targets for Drug Development.
Larsson I, Uhlén M, Zhang C, Mardinoglu A
Front Genet 11 (-) 381 [2020-04-17; online 2020-04-17]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
High photon count rates improve the quality of super-resolution fluorescence fluctuation spectroscopy.
Schneider F, Hernandez-Varas P, Christoffer Lagerholm B, ..., Eggeling C, Urbančič I
J. Phys. D: Appl. Phys. 53 (16) 164003 [2020-04-15; online 2020-02-13]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling.
Sommer ME, Selent J, Carlsson J, ..., Waldhoer M, Kolb P
ACS pharmacology & translational science 3 (2) 361-370 [2020-04-10; online 2020-03-31]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
The in vitro cytotoxic, genotoxic, and oxidative damage potentials of the oral artificial sweetener aspartame on cultured human blood cells
Çadirci K, Özdemir Tozlu Ö, Türkez H, Mardinoğlu A
Turk J Med Sci 50 (2) 448-454 [2020-04-09; online 2020-04-09]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Pooled CRISPRi screening of the cyanobacterium Synechocystis sp PCC 6803 for enhanced industrial phenotypes.
Yao L, Shabestary K, Björk SM, ..., Jahn M, Hudson EP
Nat Commun 11 (1) 1666 [2020-04-03; online 2020-04-03]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease.
Zhang C, Bjornson E, Arif M, ..., Borén J, Mardinoglu A
Mol Syst Biol 16 (4) e9495 [2020-04-00; online 2020-04-28]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Neuroimaging premenstrual dysphoric disorder: A systematic and critical review.
Dubol M, Epperson CN, Lanzenberger R, Sundström-Poromaa I, Comasco E
Front Neuroendocrinol 57 (-) 100838 [2020-04-00; online 2020-04-05]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm.
Sahlin K, Medvedev P
J. Comput. Biol. 27 (4) 472-484 [2020-04-00; online 2020-03-16]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
An adipocyte-specific defect in oxidative phosphorylation increases systemic energy expenditure and protects against diet-induced obesity in mouse models.
Choi MJ, Jung SB, Lee SE, ..., Yi HS, Shong M
Diabetologia 63 (4) 837-852 [2020-04-00; online 2020-01-10]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
An atlas of human metabolism.
Robinson JL, Kocabaş P, Wang H, ..., Uhlén M, Nielsen J
Sci Signal 13 (624) eaaz1482 [2020-03-24; online 2020-03-24]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Monoamine oxidase A genotype and methylation moderate the association of maltreatment and aggressive behaviour.
Checknita D, Bendre M, Ekström TJ, ..., Hodgins S, Nilsson KW
Behav. Brain Res. 382 (-) 112476 [2020-03-16; online 2020-01-10]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
An atlas of the protein-coding genes in the human, pig, and mouse brain.
Sjöstedt E, Zhong W, Fagerberg L, ..., Uhlén M, Mulder J
Science (New York, N.Y.) 367 (6482) eaay5947 [2020-03-06; online 2020-03-07]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Structure of a minimal photosystem I from the green alga Dunaliella salina.
Perez-Boerema A, Klaiman D, Caspy I, ..., Amunts A, Nelson N
Nat Plants 6 (3) 321-327 [2020-03-00; online 2020-03-02]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity.
Jaiteh M, Rodríguez-Espigares I, Selent J, Carlsson J
PLoS Comput Biol 16 (3) e1007680 [2020-03-00; online 2020-03-13]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C
Nat. Biotechnol. 38 (3) 272-276 [2020-03-00; online 2020-03-04]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity.
Jamy M, Foster R, Barbera P, ..., Bass D, Burki F
Mol Ecol Resour 20 (2) 429-443 [2020-03-00; online 2019-11-29]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Life in the dark: far-red absorbing cyanobacteria extend photic zones deep into terrestrial caves.
Behrendt L, Trampe EL, Nord NB, ..., Hershey OS, Barton H
Environ. Microbiol. 22 (3) 952-963 [2020-03-00; online 2019-09-09]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
Distinct structural modulation of photosystem I and lipid environment stabilizes its tetrameric assembly.
Chen M, Perez-Boerema A, Zhang L, ..., Li S, Amunts A
Nat Plants 6 (3) 314-320 [2020-03-00; online 2020-03-09]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Impact of Nanoscale Hindrances on the Relationship between Lipid Packing and Diffusion in Model Membranes.
Beckers D, Urbancic D, Sezgin E
J Phys Chem B 124 (8) 1487-1494 [2020-02-27; online 2020-02-18]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma.
Das Mahapatra K, Pasquali L, Søndergaard JN, ..., Kristensen LS, Pivarcsi A
Sci Rep 10 (1) 3637 [2020-02-27; online 2020-02-27]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches.
Fleetwood O, Matricon P, Carlsson J, Delemotte L
Biochemistry 59 (7) 880-891 [2020-02-25; online 2020-02-07]
Jens Carlsson Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Creating Supported Plasma Membrane Bilayers Using Acoustic Pressure.
Sezgin E, Carugo D, Levental I, Stride E, Eggeling C
Membranes (Basel) 10 (2) 30 [2020-02-18; online 2020-02-18]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Biophysical Characterization of Epigallocatechin-3-Gallate Effect on the Cardiac Sodium Channel Nav1.5.
Amarouch MY, Kurt H, Delemotte L, Abriel H
Molecules 25 (4) 902 [2020-02-18; online 2020-02-18]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Radial Organization in the Mammalian Nucleus.
Crosetto N, Bienko M
Front Genet 11 (-) 33 [2020-02-12; online 2020-02-12]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Regulation of lipid saturation without sensing membrane fluidity.
Ballweg S, Sezgin E, Doktorova M, ..., Hummer G, Ernst R
Nat Commun 11 (1) 756 [2020-02-06; online 2020-02-06]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Molecular Insights from Conformational Ensembles via Machine Learning.
Fleetwood O, Kasimova MA, Westerlund AM, Delemotte L
Biophys. J. 118 (3) 765-780 [2020-02-04; online 2019-12-21]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Abundance and diversity of resistomes differ between healthy human oral cavities and gut.
Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL
Nat Commun 11 (1) 693 [2020-02-04; online 2020-02-04]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API.
Desvignes T, Loher P, Eilbeck K, ..., Halushka MK, Pantano L
Bioinformatics 36 (3) 698-703 [2020-02-01; online 2019-09-11]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
The molecular basis for sugar import in malaria parasites.
Qureshi AA, Suades A, Matsuoka R, ..., Delemotte L, Drew D
Nature 578 (7794) 321-325 [2020-02-00; online 2020-01-29]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Handling ties in continuous outcomes for confounder adjustment with rank-ordered logit and its application to ordinal outcomes.
Ning Y, Tan CS, Maraki A, ..., Reilly M, Støer NC
Stat Methods Med Res 29 (2) 437-454 [2020-02-00; online 2019-04-03]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Environmental impacts and limitations of third‐generation biobutanol: Life cycle assessment of n ‐butanol produced by genetically engineered cyanobacteria
Nilsson A, Shabestary K, Brandão M, Hudson EP
Journal of Industrial Ecology 24 (1) 205-216 [2020-02-00; online 2019-04-00]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Classification of clear cell renal cell carcinoma based on PKM alternative splicing.
Li X, Turanli B, Juszczak K, ..., Zhang C, Mardinoglu A
Heliyon 6 (2) e03440 [2020-02-00; online 2020-02-19]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D.
Sayitoglu EC, Georgoudaki AM, Chrobok M, ..., Sutlu T, Duru AD
Front Immunol 11 (-) 40 [2020-01-28; online 2020-01-28]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Population Genomics of Transitions to Selfing in Brassicaceae Model Systems.
Mattila TM, Laenen B, Slotte T
Methods in molecular biology (Clifton, N.J.) 2090 (-) 269-287 [2020-01-25; online 2020-01-25]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Docking Finds GPCR Ligands in Dark Chemical Matter.
Ballante F, Rudling A, Zeifman A, ..., Loza MI, Carlsson J
J Med Chem 63 (2) 613-620 [2020-01-23; online 2020-01-13]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Novel anti-Alzheimer phenol-lipoyl hybrids: Synthesis, physico-chemical characterization, and biological evaluation.
Pagoni A, Marinelli L, Di Stefano A, ..., Vassiliou S, Cacciatore I
Eur J Med Chem 186 (-) 111880 [2020-01-15; online 2019-11-12]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
A set of monomeric near-infrared fluorescent proteins for multicolor imaging across scales.
Matlashov ME, Shcherbakova DM, Alvelid J, ..., Testa I, Verkhusha VV
Nat Commun 11 (1) 239 [2020-01-13; online 2020-01-13]
Ilaria Testa SciLifeLab Fellow
DOI Crossref
Stable stimulated emission depletion imaging of extended sample regions
Alvelid J, Testa I
J. Phys. D: Appl. Phys. 53 (2) 024001 [2020-01-09; online 2019-10-25]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
MirGeneDB 2.0: the metazoan microRNA complement.
Fromm B, Domanska D, Høye E, ..., Friedländer MR, Peterson KJ
Nucleic Acids Res. 48 (D1) D1172 [2020-01-08; online 2019-10-24]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe.
Martínez-Sancho E, Slámová L, Morganti S, ..., Westin J, Fonti P
Sci Data 7 (1) 1 [2020-01-02; online 2020-01-02]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Protein aggregation in bacteria.
Schramm FD, Schroeder K, Jonas K
FEMS Microbiol Rev 44 (1) 54-72 [2020-01-01; online 2019-10-22]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Advances in GLP-1 receptor targeting radiolabeled agent development and prospective of theranostics.
Velikyan I, Eriksson O
Theranostics 10 (1) 437-461 [2020-01-01; online 2020-01-01]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
The New Tree of Eukaryotes.
Burki F, Roger AJ, Brown MW, Simpson AGB
Trends in Ecology & Evolution 35 (1) 43-55 [2020-01-00; online 2019-10-09]
Fabien Burki SciLifeLab Fellow
DOI Crossref
Ontogenic succession of thermokarst thaw ponds is linked to dissolved organic matter quality and microbial degradation potential
Peura S, Wauthy M, Simone D, ..., Rautio M, Bertilsson S
Limnol. Oceanogr. 65 (S1) - [2020-01-00; online 2020-01-00]
Sari Peura SciLifeLab Fellow
DOI Crossref
Non‐cyanobacterial diazotrophs dominate nitrogen‐fixing communities in permafrost thaw ponds
Fernandez L, Bertilsson S, Peura S
Limnol. Oceanogr. 65 (S1) - [2020-01-00; online 2020-01-00]
Sari Peura SciLifeLab Fellow
DOI Crossref
Chapter 7. Bridging the Gap Between Atomistic Molecular Dynamics Simulations and Wet-lab Experimental Techniques: Applications to Membrane Proteins
Delemotte L
- - (-) 247-286 [2020-00-00; online 2020-00-00]
Lucie Delemotte SciLifeLab Fellow

Year 2019

PubMed DOI Crossref
A genome-wide transcriptomic analysis of protein-coding genes in human blood cells.
Uhlen M, Karlsson MJ, Zhong W, ..., Fagerberg L, Brodin P
Science (New York, N.Y.) 366 (6472) eaax9198 [2019-12-20; online 2019-12-21]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island.
Latreille AC, Milesi P, Magalon H, Mavingui P, Atyame CM
Parasit Vectors 12 (1) 597 [2019-12-19; online 2019-12-19]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
InfleCS: Clustering Free Energy Landscapes with Gaussian Mixtures.
Westerlund AM, Delemotte L
J Chem Theory Comput 15 (12) 6752-6759 [2019-12-10; online 2019-11-07]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Overeating Saturated Fat Promotes Fatty Liver and Ceramides Compared With Polyunsaturated Fat: A Randomized Trial.
Rosqvist F, Kullberg J, Ståhlman M, ..., Ahlström H, Risérus U
J. Clin. Endocrinol. Metab. 104 (12) 6207-6219 [2019-12-01; online 2019-08-02]
Olof Eriksson SciLifeLab Fellow
DOI Crossref
Fluorescence microscopy at the molecular scale
Alvelid J, Testa I
Current Opinion in Biomedical Engineering 12 (-) 34-42 [2019-12-00; online 2019-12-00]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast.
Wei W, Hennig BP, Wang J, ..., Steinmetz LM, Pelechano V
Genome Res 29 (12) 1974-1984 [2019-12-00; online 2019-11-18]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Cardiac expression of the microsomal triglyceride transport protein protects the heart function during ischemia.
Klevstig M, Arif M, Mannila M, ..., Ehrenborg E, Borén J
J. Mol. Cell. Cardiol. 137 (-) 1-8 [2019-12-00; online 2019-09-15]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees.
Milesi P, Berlin M, Chen J, ..., Karlsson B, Lascoux M
Evol Appl 12 (10) 1946-1959 [2019-12-00; online 2019-08-22]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Helix breaking transition in the S4 of HCN channel is critical for hyperpolarization-dependent gating.
Kasimova MA, Tewari D, Cowgill JB, ..., Delemotte L, Chanda B
Elife 8 (-) - [2019-11-27; online 2019-11-27]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
The human secretome.
Uhlén M, Karlsson MJ, Hober A, ..., Fagerberg L, Sivertsson Å
Sci Signal 12 (609) eaaz0274 [2019-11-26; online 2019-11-26]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Metabolically Active Brown Adipose Tissue Is Found in Adult Subjects with Type 1 Diabetes.
Eriksson O, Selvaraju RK, Berglund M, Espes D
Int J Mol Sci 20 (23) 5827 [2019-11-20; online 2019-11-20]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Structure of a mitochondrial ATP synthase with bound native cardiolipin.
Mühleip A, McComas SE, Amunts A
Elife 8 (-) - [2019-11-18; online 2019-11-18]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
More Favorable Palmitic Acid Over Palmitoleic Acid Modification of Wnt3 Ensures Its Localization and Activity in Plasma Membrane Domains.
Azbazdar Y, Ozalp O, Sezgin E, ..., Karaca E, Ozhan G
Front Cell Dev Biol 7 (-) 281 [2019-11-15; online 2019-11-15]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Systems biology perspective for studying the gut microbiota in human physiology and liver diseases.
Altay O, Nielsen J, Uhlen M, Boren J, Mardinoglu A
EBioMedicine 49 (-) 364-373 [2019-11-00; online 2019-10-18]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome.
Barandun J, Hunziker M, Vossbrinck CR, Klinge S
Nat. Microbiol 4 (11) 1798-1804 [2019-11-00; online 2019-07-22]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Sharing Data from Molecular Simulations.
Abraham M, Apostolov R, Barnoud J, ..., Woods C, Zhmurov A
J Chem Inf Model 59 (10) 4093-4099 [2019-10-28; online 2019-10-11]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.
Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N
Nat Commun 10 (1) 4732 [2019-10-18; online 2019-10-18]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Assessment of glucagon receptor occupancy by Positron Emission Tomography in non-human primates.
Eriksson O, Velikyan I, Haack T, ..., Pierrou S, Wagner M
Sci Rep 9 (1) 14960 [2019-10-18; online 2019-10-18]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Dual Bioorthogonal Labeling of the Amyloid-β Protein Precursor Facilitates Simultaneous Visualization of the Protein and Its Cleavage Products.
van Husen LS, Schedin-Weiss S, Trung MN, ..., Elsässer SJ, Tjernberg LO
J. Alzheimers Dis. 72 (2) 537-548 [2019-10-15; online 2019-10-15]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Characterization of transgenic mouse models targeting neuromodulatory systems reveals organizational principles of the dorsal raphe.
Cardozo Pinto DF, Yang H, Pollak Dorocic I, ..., Smidt MP, Lammel S
Nat Commun 10 (1) 4633 [2019-10-11; online 2019-10-11]
Iskra Pollak Dorocic SciLifeLab Fellow
PubMed DOI Crossref
Remodeling the genome with DNA twists.
Bowman GD, Deindl S
Science (New York, N.Y.) 366 (6461) 35-36 [2019-10-04; online 2019-10-12]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
VGLUT2 rs2290045 genotype moderates environmental sensitivity to alcohol-related problems in three samples of youths.
Vrettou M, Nilsson KW, Tuvblad C, ..., Nylander I, Comasco E
Eur Child Adolesc Psychiatry 28 (10) 1329-1340 [2019-10-00; online 2019-02-25]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Pancreatic perfusion and its response to glucose as measured by simultaneous PET/MRI.
Espes D, Manell E, Rydén A, ..., Jansson L, Eriksson O
Acta diabetologica 56 (10) 1113-1120 [2019-10-00; online 2019-04-26]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella.
Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T
New Phytol. 224 (1) 505-517 [2019-10-00; online 2019-08-01]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Association between Transcription Factor AP-2B genotype, obesity, insulin resistance and dietary intake in a longitudinal birth cohort study.
Joost U, Villa I, Comasco E, ..., Veidebaum T, Harro J
Int J Obes (Lond) 43 (10) 2095-2106 [2019-10-00; online 2019-06-17]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
EvoChromo: towards a synthesis of chromatin biology and evolution.
Drinnenberg IA, Berger F, Elsässer SJ, ..., Warnecke T, Wolfe KH
Development 146 (19) - [2019-09-26; online 2019-09-26]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1.
Masser AE, Kang W, Roy J, ..., Friedländer MR, Andréasson C
Elife 8 (-) - [2019-09-25; online 2019-09-25]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
What industry can teach academia.
Mao Y
Science (New York, N.Y.) 365 (6459) 1342 [2019-09-20; online 2019-10-12]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Quantitative Multiplexed ChIP Reveals Global Alterations that Shape Promoter Bivalency in Ground State Embryonic Stem Cells.
Kumar B, Elsässer SJ
Cell Reports 28 (12) 3274-3284.e5 [2019-09-17; online 2019-09-19]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Mechanical properties of plasma membrane vesicles correlate with lipid order, viscosity and cell density.
Steinkühler J, Sezgin E, Urbančič I, Eggeling C, Dimova R
Commun Biol 2 (-) 337 [2019-09-13; online 2019-09-13]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Streptococcal sagA activates a proinflammatory response in mast cells by a sublytic mechanism.
von Beek C, Waern I, Eriksson J, ..., Guss B, Pejler G
Cell. Microbiol. 21 (9) e13064 [2019-09-00; online 2019-07-07]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut.
Bakkeren E, Huisman JS, Fattinger SA, ..., Diard M, Hardt WD
Nature 573 (7773) 276-280 [2019-09-00; online 2019-09-04]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Impact of demography on linked selection in two outcrossing Brassicaceae species.
Mattila TM, Laenen B, Horvath R, ..., Savolainen O, Slotte T
Ecol Evol 9 (17) 9532-9545 [2019-09-00; online 2019-08-13]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce.
Chen J, Li L, Milesi P, ..., Vendramin GG, Lascoux M
Evol Appl 12 (8) 1539-1551 [2019-09-00; online 2019-04-30]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Early life stress and voluntary alcohol consumption in relation to Maoa methylation in male rats.
Bendre M, Granholm L, Drennan R, ..., Nylander I, Comasco E
Alcohol 79 (-) 7-16 [2019-09-00; online 2018-11-08]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Turning Up the Heat: Local Temperature Control During in vivo Imaging of Immune Cells.
Ahl D, Eriksson O, Sedin J, ..., Christoffersson G, Phillipson M
Front Immunol 10 (-) 2036 [2019-08-27; online 2019-08-27]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Nanoscale dynamics of cholesterol in the cell membrane.
Pinkwart K, Schneider F, Lukoseviciute M, ..., Eggeling C, Sezgin E
J. Biol. Chem. 294 (34) 12599-12609 [2019-08-23; online 2019-07-03]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Molecular Basis and Ecological Relevance of Caulobacter Cell Filamentation in Freshwater Habitats.
Heinrich K, Leslie DJ, Morlock M, Bertilsson S, Jonas K
MBio 10 (4) - [2019-08-20; online 2019-08-20]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Progress towards the Tree of Eukaryotes.
Keeling PJ, Burki F
Curr. Biol. 29 (16) R808-R817 [2019-08-19; online 2019-08-21]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
MRPS25 mutations impair mitochondrial translation and cause encephalomyopathy.
Bugiardini E, Mitchell AL, Rosa ID, ..., Pitceathly RDS, Spinazzola A
Hum. Mol. Genet. 28 (16) 2711-2719 [2019-08-15; online 2019-05-01]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer.
Cadenas C, Vosbeck S, Edlund K, ..., Marchan R, Hengstler JG
Int. J. Cancer 145 (4) 901-915 [2019-08-15; online 2019-02-07]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Chemoselective probe for detailed analysis of ketones and aldehydes produced by gut microbiota in human samples.
Conway LP, Garg N, Lin W, ..., Löhr JM, Globisch D
Chem. Commun. (Camb.) 55 (62) 9080-9083 [2019-08-11; online 2019-07-09]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.
Rangavittal S, Stopa N, Tomaszkiewicz M, ..., Makova KD, Medvedev P
BMC Genomics 20 (1) 641 [2019-08-09; online 2019-08-09]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5' structure element.
Romilly C, Deindl S, Wagner EGH
Proc. Natl. Acad. Sci. U.S.A. 116 (32) 15901-15906 [2019-08-06; online 2019-07-18]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Tools for Bioimaging Pancreatic β Cells in Diabetes.
Kang NY, Soetedjo AAP, Amirruddin NS, ..., Eriksson O, Teo AKK
Trends in molecular medicine 25 (8) 708-722 [2019-08-00; online 2019-06-06]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Strategies for increasing the throughput of super-resolution microscopies.
Mahecic D, Testa I, Griffié J, Manley S
Curr Opin Chem Biol 51 (-) 84-91 [2019-08-00; online 2019-06-15]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Single-cell expression noise and gene-body methylation in Arabidopsis thaliana.
Horvath R, Laenen B, Takuno S, Slotte T
Heredity (Edinb) 123 (2) 81-91 [2019-08-00; online 2019-01-16]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Hypothalamic-pituitary-adrenal axis responsiveness, startle response, and sensorimotor gating in late pregnancy.
Breedh J, Comasco E, Hellgren C, ..., Skalkidou A, Poromaa IS
Psychoneuroendocrinology 106 (-) 1-8 [2019-08-00; online 2019-03-15]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Human prenatal exposure to polychlorinated biphenyls (PCBs) and risk behaviors in adolescence.
Dickerson AS, Ransome Y, Karlsson O
Environ Int 129 (-) 247-255 [2019-08-00; online 2019-05-27]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Elucidating the Reprograming of Colorectal Cancer Metabolism Using Genome-Scale Metabolic Modeling.
Zhang C, Aldrees M, Arif M, ..., Mardinoglu A, Aziz MA
Front Oncol 9 (-) 681 [2019-07-30; online 2019-07-30]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Constitutive Serotonin Transporter Reduction Resembles Maternal Separation with Regard to Stress-Related Gene Expression.
Comasco E, Schijven D, de Maeyer H, ..., Sundström-Poromaa I, Olivier JDA
ACS Chem Neurosci 10 (7) 3132-3142 [2019-07-17; online 2019-01-23]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
The Potential Use of Metabolic Cofactors in Treatment of NAFLD.
Mardinoglu A, Ural D, Zeybel M, ..., Uhlén M, Borén J
Nutrients 11 (7) 1578 [2019-07-12; online 2019-07-12]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC.
Nirwan N, Itoh Y, Singh P, ..., Amunts A, Saikrishnan K
Nat Commun 10 (1) 3058 [2019-07-11; online 2019-07-11]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Coupled Enzymatic Treatment and Mass Spectrometric Analysis for Identification of Glucuronidated Metabolites in Human Samples.
Correia MSP, Rao M, Ballet C, Globisch D
Chembiochem 20 (13) 1678-1683 [2019-07-01; online 2019-05-08]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Regulation of the replication initiator DnaA in Caulobacter crescentus.
Felletti M, Omnus DJ, Jonas K
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1862 (7) 697-705 [2019-07-00; online 2018-01-31]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Plasma Proteomics Analysis Reveals Dysregulation of Complement Proteins and Inflammation in Acquired Obesity-A Study on Rare BMI-Discordant Monozygotic Twin Pairs.
Sahebekhtiari N, Saraswat M, Joenväärä S, ..., Renkonen R, Pietiläinen KH
Proteomics Clin Appl 13 (4) e1800173 [2019-07-00; online 2019-02-05]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Outlining the proton-conduction pathway in otopetrin channels.
Delemotte L
Nat. Struct. Mol. Biol. 26 (7) 528-530 [2019-07-00; online 2019-06-27]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Cryo-EM structure of the activated RET signaling complex reveals the importance of its cysteine-rich domain.
Bigalke JM, Aibara S, Roth R, ..., Amunts A, Sandmark J
Sci Adv 5 (7) eaau4202 [2019-07-00; online 2019-07-31]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
GPR44 as a Target for Imaging Pancreatic Beta-Cell Mass.
Eriksson O
Current diabetes reports 19 (8) 49 [2019-06-27; online 2019-06-27]
Olof Eriksson SciLifeLab Fellow
DOI Crossref
Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden
Parducci L, Alsos IG, Unneberg P, ..., Slotte T, Wohlfarth B
Front. Ecol. Evol. 7 (-) - [2019-06-20; online 2019-06-20]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Mitotically heritable effects of BMAA on striatal neural stem cell proliferation and differentiation.
Pierozan P, Karlsson O
Cell Death Dis 10 (7) 478 [2019-06-17; online 2019-06-17]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Conformational switches control early maturation of the eukaryotic small ribosomal subunit.
Hunziker M, Barandun J, Buzovetsky O, ..., Molina H, Klinge S
Elife 8 (-) - [2019-06-17; online 2019-06-17]
Jonas Barandun SciLifeLab Fellow
DOI Crossref
RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models
Zhang C, Lee S, Bidkhori G, ..., Nielsen J, Mardinoglu A
- - (-) - [2019-06-06; online 2019-06-06]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Regulatory Immune Mechanisms beyond Regulatory T Cells.
Christoffersson G, von Herrath M
Trends Immunol. 40 (6) 482-491 [2019-06-00; online 2019-05-14]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Growth-driven displacement of protein aggregates along the cell length ensures partitioning to both daughter cells in Caulobacter crescentus.
Schramm FD, Schroeder K, Alvelid J, Testa I, Jonas K
Mol. Microbiol. 111 (6) 1430-1448 [2019-06-00; online 2019-04-03]
Ilaria Testa Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Biorelevant intrinsic dissolution profiling in early drug development: Fundamental, methodological, and industrial aspects.
Bergström CAS, Box K, Holm R, ..., Schäfer KJ, Teleki A
Eur J Pharm Biopharm 139 (-) 101-114 [2019-06-00; online 2019-03-09]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Mucus Architecture and Near-Surface Swimming Affect Distinct Salmonella Typhimurium Infection Patterns along the Murine Intestinal Tract.
Furter M, Sellin ME, Hansson GC, Hardt WD
Cell Reports 27 (9) 2665-2678.e3 [2019-05-28; online 2019-05-30]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Barcoded Consortium Infections Resolve Cell Type-Dependent Salmonella enterica Serovar Typhimurium Entry Mechanisms.
Di Martino ML, Ek V, Hardt WD, Eriksson J, Sellin ME
MBio 10 (3) - [2019-05-21; online 2019-05-21]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Lysosomotropic challenge of mast cells causes intra-granular reactive oxygen species production.
Paivandy A, Eriksson J, Melo FR, Sellin ME, Pejler G
Cell death discovery 5 (1) 95 [2019-05-15; online 2019-05-15]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks.
Domingo-Prim J, Endara-Coll M, Bonath F, ..., Huertas P, Visa N
Nat Commun 10 (1) 2135 [2019-05-13; online 2019-05-13]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis.
Herp S, Brugiroux S, Garzetti D, ..., Berry D, Stecher B
Cell Host Microbe 25 (5) 681-694.e8 [2019-05-08; online 2019-04-18]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Multi-Omic Data Interpretation to Repurpose Subtype Specific Drug Candidates for Breast Cancer.
Turanli B, Karagoz K, Bidkhori G, ..., Mardinoglu A, Arga KY
Front Genet 10 (-) 420 [2019-05-07; online 2019-05-07]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Human skin long noncoding RNA WAKMAR1 regulates wound healing by enhancing keratinocyte migration.
Li D, Kular L, Vij M, ..., Jagodic M, Landén NX
Proc. Natl. Acad. Sci. U.S.A. 116 (19) 9443-9452 [2019-05-07; online 2019-04-24]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition.
Liao Q, Lüking M, Krüger DM, ..., Kasson PM, Lynn Kamerlin SC
J Phys Chem B 123 (17) 3576-3590 [2019-05-02; online 2019-04-18]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris).
Kryvokhyzha D, Milesi P, Duan T, ..., Glémin S, Lascoux M
PLoS Genet 15 (5) e1008131 [2019-05-00; online 2019-05-13]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Stress-related genetic polymorphisms in association with peripartum depression symptoms and stress hormones: A longitudinal population-based study.
Skalkidou A, Poromaa IS, Iliadis SI, ..., Freyhult E, Comasco E
Psychoneuroendocrinology 103 (-) 296-305 [2019-05-00; online 2019-02-07]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Non-Invasive Imaging Methodologies for Assessment of Radiation Damage to Bone Marrow and Kidneys from Peptide Receptor Radionuclide Therapy.
Ahlstedt J, Johansson E, Sydoff M, ..., Gram M, Eriksson O
Neuroendocrinology 110 (1-2) 130-138 [2019-04-19; online 2019-04-19]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling.
Sabantsev A, Levendosky RF, Zhuang X, Bowman GD, Deindl S
Nat Commun 10 (1) 1720 [2019-04-12; online 2019-04-12]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Receptor-Independent Transfer of Low Density Lipoprotein Cargo to Biomembranes.
Axmann M, Sezgin E, Karner A, ..., Stangl H, Plochberger B
Nano Lett. 19 (4) 2562-2567 [2019-04-10; online 2019-03-08]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.
Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M
Nat Commun 10 (1) 1636 [2019-04-09; online 2019-04-09]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection.
Garcia-Moreno M, Noerenberg M, Ni S, ..., Mohammed S, Castello A
Mol. Cell 74 (1) 196-211.e11 [2019-04-04; online 2019-02-21]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Mature Human White Adipocytes Cultured under Membranes Maintain Identity, Function, and Can Transdifferentiate into Brown-like Adipocytes.
Harms MJ, Li Q, Lee S, ..., Spalding KL, Boucher J
Cell Reports 27 (1) 213-225.e5 [2019-04-02; online 2019-04-04]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Case Reports of Pre-clinical Replication Studies in Metabolism and Diabetes.
von Herrath M, Pagni PP, Grove K, ..., Karlsen AE, Petersen JS
Cell Metab. 29 (4) 795-802 [2019-04-02; online 2019-03-14]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life.
Strassert JFH, Jamy M, Mylnikov AP, Tikhonenkov DV, Burki F
Mol. Biol. Evol. 36 (4) 757-765 [2019-04-01; online 2019-01-23]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Synthesis and preclinical evaluation of the CRTH2 antagonist [11C]MK-7246 as a novel PET tracer and potential surrogate marker for pancreatic beta-cell mass.
Eriksson J, Roy T, Sawadjoon S, ..., Eriksson O, Odell LR
Nucl. Med. Biol. 71 (-) 1-10 [2019-04-00; online 2019-04-13]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Measuring nanoscale diffusion dynamics in cellular membranes with super-resolution STED-FCS.
Sezgin E, Schneider F, Galiani S, ..., Lagerholm BC, Eggeling C
Nat Protoc 14 (4) 1054-1083 [2019-04-00; online 2019-03-06]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Liver macrophages regulate systemic metabolism through non-inflammatory factors.
Morgantini C, Jager J, Li X, ..., Bajgar A, Aouadi M
Nat Metab 1 (4) 445-459 [2019-04-00; online 2019-03-25]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning.
Turanli B, Zhang C, Kim W, ..., Arga KY, Mardinoglu A
EBioMedicine 42 (-) 386-396 [2019-04-00; online 2019-03-21]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
A whole-brain atlas of monosynaptic input targeting four different cell types in the medial prefrontal cortex of the mouse.
Ährlund-Richter S, Xuan Y, van Lunteren JA, ..., Meletis K, Carlén M
Nat. Neurosci. 22 (4) 657-668 [2019-04-00; online 2019-03-18]
Iskra Pollak Dorocic SciLifeLab Fellow
PubMed DOI Crossref
Comprehensive kinetic and substrate specificity analysis of an arylsulfatase from Helix pomatia using mass spectrometry.
Correia MSP, Ballet C, Meistermann H, Conway LP, Globisch D
Bioorg. Med. Chem. 27 (6) 955-962 [2019-03-15; online 2019-01-30]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Expression of PD-L1 and PD-1 in Chemoradiotherapy-Naïve Esophageal and Gastric Adenocarcinoma: Relationship With Mismatch Repair Status and Survival.
Svensson MC, Borg D, Zhang C, ..., Leandersson K, Jirström K
Front Oncol 9 (-) 136 [2019-03-13; online 2019-03-13]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake.
Rissanen AJ, Peura S, Mpamah PA, ..., Mäki A, Nykänen H
FEMS Microbiol. Lett. 366 (5) - [2019-03-01; online 2019-02-27]
Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function.
Liu Z, Zhang C, Lee S, ..., Boren J, Mardinoglu A
Metab. Eng. 52 (-) 263-272 [2019-03-00; online 2019-01-04]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Plant microRNAs in human sera are likely contaminants.
Fromm B, Kang W, Rovira C, ..., Friedländer MR, Tosar JP
J Nutr Biochem 65 (-) 139-140 [2019-03-00; online 2018-09-05]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa.
Monnahan P, Kolář F, Baduel P, ..., Bomblies K, Yant L
Nat Ecol Evol 3 (3) 457-468 [2019-03-00; online 2019-02-25]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Long-term balancing selection drives evolution of immunity genes in Capsella.
Koenig D, Hagmann J, Li R, ..., Wright SI, Weigel D
Elife 8 (-) - [2019-02-26; online 2019-02-26]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha).
Fromm B, Tosar JP, Aguilera F, ..., Bachmann L, Hejnol A
Noncoding RNA 5 (1) 19 [2019-02-22; online 2019-02-22]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
First-in-class positron emission tomography tracer for the glucagon receptor.
Velikyan I, Haack T, Bossart M, ..., Wagner M, Eriksson O
EJNMMI Res 9 (1) 17 [2019-02-15; online 2019-02-15]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Heterogeneity of Metabolic Defects in Type 2 Diabetes and Its Relation to Reactive Oxygen Species and Alterations in Beta-Cell Mass.
Elksnis A, Martinell M, Eriksson O, Espes D
Front. Physiol. 10 (-) 107 [2019-02-13; online 2019-02-13]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection.
Wright SC, Kozielewicz P, Kowalski-Jahn M, ..., Carlsson J, Schulte G
Nat Commun 10 (1) 667 [2019-02-08; online 2019-02-08]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Kinetic modeling of the Calvin cycle identifies flux control and stable metabolomes in Synechocystis carbon fixation.
Janasch M, Asplund-Samuelsson J, Steuer R, Hudson EP
J. Exp. Bot. 70 (3) 973-983 [2019-02-05; online 2018-10-30]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Structural Patching Fosters Divergence of Mitochondrial Ribosomes.
Petrov AS, Wood EC, Bernier CR, ..., Brown A, Amunts A
Mol. Biol. Evol. 36 (2) 207-219 [2019-02-01; online 2018-12-06]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Smart scanning for low-illumination and fast RESOLFT nanoscopy in vivo.
Dreier J, Castello M, Coceano G, ..., Vicidomini G, Testa I
Nat Commun 10 (1) 556 [2019-02-01; online 2019-02-01]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Transcription-driven chromatin repression of Intragenic transcription start sites.
Nielsen M, Ard R, Leng X, ..., Pelechano V, Marquardt S
PLoS Genet 15 (2) e1007969 [2019-02-00; online 2019-02-01]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.
Benfeitas R, Bidkhori G, Mukhopadhyay B, ..., Kunos G, Mardinoglu A
EBioMedicine 40 (-) 471-487 [2019-02-00; online 2018-12-31]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Discovery of KIRREL as a biomarker for prognostic stratification of patients with thin melanoma.
Lundgren S, Fagerström-Vahman H, Zhang C, ..., Nodin B, Jirström K
Biomark Res 7 (1) 1 [2019-01-14; online 2019-01-14]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Negative Association Between Allopregnanolone and Cerebral Serotonin Transporter Binding in Healthy Women of Fertile Age.
Sundström Poromaa I, Comasco E, Bäckström T, ..., Jensen P, Frokjaer VG
Front Psychol 9 (-) 2767 [2019-01-11; online 2019-01-11]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
The Circulating Transcriptome as a Source of Biomarkers for Melanoma.
Solé C, Tramonti D, Schramm M, ..., Middleton MR, Lawrie CH
Cancers (Basel) 11 (1) 70 [2019-01-10; online 2019-01-10]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity.
Garcia SL, Szekely AJ, Bergvall C, Schattenhofer M, Peura S
mSphere 4 (1) - [2019-01-09; online 2019-01-09]
Sarahi Garcia Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Ascetosporea.
Bass D, Ward GM, Burki F
Curr. Biol. 29 (1) R7-R8 [2019-01-07; online 2019-01-09]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium.
Westermann AJ, Venturini E, Sellin ME, ..., Hardt WD, Vogel J
MBio 10 (1) - [2019-01-02; online 2019-01-02]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
A Neural Circuit Mechanism for Encoding Aversive Stimuli in the Mesolimbic Dopamine System.
de Jong JW, Afjei SA, Pollak Dorocic I, ..., Deisseroth K, Lammel S
Neuron 101 (1) 133-151.e7 [2019-01-02; online 2018-11-29]
Iskra Pollak Dorocic SciLifeLab Fellow
PubMed DOI Crossref
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.
Adl SM, Bass D, Lane CE, ..., Zlatogursky V, Zhang Q
J. Eukaryot. Microbiol. 66 (1) 4-119 [2019-01-00; online 2018-09-27]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Phylogenomics supports the monophyly of the Cercozoa.
Irwin NAT, Tikhonenkov DV, Hehenberger E, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 130 (-) 416-423 [2019-01-00; online 2018-10-11]
Fabien Burki SciLifeLab Fellow
DOI Crossref
Nanostructured Minerals and Vitamins for Food Fortification and Food Supplementation
Knijnenburg JTN, Posavec L, Teleki A
- - (-) 63-98 [2019-00-00; online 2019-00-00]
Alexandra Teleki SciLifeLab Fellow

Year 2018

PubMed DOI Crossref
The development of a GPR44 targeting radioligand [11C]AZ12204657 for in vivo assessment of beta cell mass.
Jahan M, Johnström P, Selvaraju RK, ..., Halldin C, Eriksson O
EJNMMI Res 8 (1) 113 [2018-12-27; online 2018-12-27]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
CD45 exclusion- and cross-linking-based receptor signaling together broaden FcεRI reactivity.
Felce JH, Sezgin E, Wane M, ..., Eggeling C, Davis SJ
Sci Signal 11 (561) - [2018-12-18; online 2018-12-18]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
acI Actinobacteria Assemble a Functional Actinorhodopsin with Natively Synthesized Retinal.
Dwulit-Smith JR, Hamilton JJ, Stevenson DM, ..., McMahon KD, Forest KT
Applied and environmental microbiology 84 (24) - [2018-12-15; online 2018-11-30]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.
Bonath F, Domingo-Prim J, Tarbier M, Friedländer MR, Visa N
Nucleic Acids Res. 46 (22) 11869-11882 [2018-12-14; online 2018-11-13]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes.
Bidkhori G, Benfeitas R, Klevstig M, ..., Boren J, Mardinoglu A
Proc. Natl. Acad. Sci. U.S.A. 115 (50) E11874-E11883 [2018-12-11; online 2018-11-27]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
miRTrace reveals the organismal origins of microRNA sequencing data.
Kang W, Eldfjell Y, Fromm B, ..., Biryukova I, Friedländer MR
Genome Biol. 19 (1) 213 [2018-12-04; online 2018-12-04]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
FZD5 is a Gαq-coupled receptor that exhibits the functional hallmarks of prototypical GPCRs.
Wright SC, Cañizal MCA, Benkel T, ..., Schulte G, Hoffmann C
Sci Signal 11 (559) eaar5536 [2018-12-04; online 2018-12-04]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Tumor suppressor PNRC1 blocks rRNA maturation by recruiting the decapping complex to the nucleolus.
Gaviraghi M, Vivori C, Pareja Sanchez Y, ..., Cittaro D, Tonon G
EMBO J. 37 (23) - [2018-12-03; online 2018-10-29]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Methanogens and Iron-Reducing Bacteria: the Overlooked Members of Mercury-Methylating Microbial Communities in Boreal Lakes.
Bravo AG, Peura S, Buck M, ..., Björn E, Bertilsson S
Applied and environmental microbiology 84 (23) - [2018-12-01; online 2018-11-15]
Sari Peura SciLifeLab Fellow
DOI Crossref
HYPERPARAMETER OPTIMIZATION FOR APPROXIMATE BAYESIAN COMPUTATION
Singh P, Hellander A
- - (-) - [2018-12-00; online 2018-12-00]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Detection and quantification of beta cells by PET imaging: why clinical implementation has never been closer.
Gotthardt M, Eizirik DL, Aanstoot HJ, ..., Cnop M, Brom M
Diabetologia 61 (12) 2516-2519 [2018-12-00; online 2018-10-03]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Cost-effective generation of precise label-free quantitative proteomes in high-throughput by microLC and data-independent acquisition
Vowinckel J, Zelezniak A, Bruderer R, ..., Reiter L, Ralser M
Sci Rep 8 (1) - [2018-12-00; online 2018-03-12]
Affiliated researcher Aleksej Zelezniak SciLifeLab Fellow
PubMed DOI Crossref
Control of hepatic gluconeogenesis by Argonaute2.
Yan X, Wang Z, Bishop CA, ..., Willnow TE, Poy MN
Mol Metab 18 (-) 15-24 [2018-12-00; online 2018-10-09]
Marc Friedländer SciLifeLab Fellow
DOI Crossref
Bridging gaps in transposable element research with single-molecule and single-cell technologies
Kutter C, Jern P, Suh A
Mobile DNA 9 (1) - [2018-12-00; online 2018-12-06]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.
Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M
Commun Biol 1 (1) 209 [2018-11-28; online 2018-11-28]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Vimentin deficiency in macrophages induces increased oxidative stress and vascular inflammation but attenuates atherosclerosis in mice.
Håversen L, Sundelin JP, Mardinoglu A, ..., Levin M, Borén J
Sci Rep 8 (1) 16973 [2018-11-19; online 2018-11-19]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Methanomethylophilus alvus Mx1201 Provides Basis for Mutual Orthogonal Pyrrolysyl tRNA/Aminoacyl-tRNA Synthetase Pairs in Mammalian Cells.
Meineke B, Heimgärtner J, Lafranchi L, Elsässer SJ
ACS chemical biology 13 (11) 3087-3096 [2018-11-16; online 2018-10-12]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
PREQUAL: detecting non-homologous characters in sets of unaligned homologous sequences.
Whelan S, Irisarri I, Burki F
Bioinformatics 34 (22) 3929-3930 [2018-11-15; online 2018-06-06]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Structural Characterization of Agonist Binding to Protease-Activated Receptor 2 through Mutagenesis and Computational Modeling.
Kennedy AJ, Ballante F, Johansson JR, ..., Nordqvist A, Carlsson J
ACS pharmacology & translational science 1 (2) 119-133 [2018-11-09; online 2018-10-16]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
A Network-Based Cancer Drug Discovery: From Integrated Multi-Omics Approaches to Precision Medicine.
Turanli B, Karagoz K, Gulfidan G, ..., Mardinoglu A, Arga KY
Curr. Pharm. Des. 24 (32) 3778-3790 [2018-11-07; online 2018-11-07]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Forces drive basement membrane invasion in Caenorhabditis elegans.
Cáceres R, Bojanala N, Kelley LC, ..., Sherwood DR, Plastino J
Proc. Natl. Acad. Sci. U.S.A. 115 (45) 11537-11542 [2018-11-06; online 2018-10-22]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.
Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P
Nat Commun 9 (1) 4601 [2018-11-02; online 2018-11-02]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
microRNA-205-5p is a modulator of insulin sensitivity that inhibits FOXO function.
Langlet F, Tarbier M, Haeusler RA, ..., Friedländer MR, Accili D
Mol Metab 17 (-) 49-60 [2018-11-00; online 2018-08-11]
Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative.
Mobarak E, Javanainen M, Kulig W, ..., Rog T, Vattulainen I
Biochim Biophys Acta Biomembr 1860 (11) 2436-2445 [2018-11-00; online 2018-07-18]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Gene-environment interaction of monoamine oxidase A in relation to antisocial behaviour: current and future directions.
Nilsson KW, Åslund C, Comasco E, Oreland L
J Neural Transm (Vienna) 125 (11) 1601-1626 [2018-11-00; online 2018-06-07]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Ribosome Profiling of Synechocystis Reveals Altered Ribosome Allocation at Carbon Starvation
Karlsen J, Asplund-Samuelsson J, Thomas Q, Jahn M, Hudson EP
mSystems 3 (5) - [2018-10-30; online 2018-10-30]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Chemoselective Probe Containing a Unique Bioorthogonal Cleavage Site for Investigation of Gut Microbiota Metabolism.
Garg N, Conway LP, Ballet C, ..., Löhr JM, Globisch D
Angew. Chem. Int. Ed. Engl. 57 (42) 13805-13809 [2018-10-15; online 2018-09-20]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Noninvasive Urine Biomarker Lateral Flow Immunoassay for Monitoring Active Onchocerciasis.
Shirey RJ, Globisch D, Eubanks LM, Hixon MS, Janda KD
ACS Infect Dis 4 (10) 1423-1431 [2018-10-12; online 2018-09-21]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Growth of Cyanobacteria Is Constrained by the Abundance of Light and Carbon Assimilation Proteins.
Jahn M, Vialas V, Karlsen J, ..., Käll L, Hudson EP
Cell Reports 25 (2) 478-486.e8 [2018-10-09; online 2018-10-12]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Rapid Isolation of the Mitoribosome from HEK Cells.
Aibara S, Andréll J, Singh V, Amunts A
J Vis Exp - (140) - [2018-10-04; online 2018-10-04]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Reconstitution of immune cell interactions in free-standing membranes.
Jenkins E, Santos AM, O'Brien-Ball C, ..., Eggeling C, Sezgin E
J. Cell. Sci. 132 (4) - [2018-10-02; online 2018-10-02]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Opening leads to closing: Allosteric crosstalk between the activation and inactivation gates in KcsA.
Delemotte L
J. Gen. Physiol. 150 (10) 1356-1359 [2018-10-01; online 2018-08-24]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Determining the molecular basis of voltage sensitivity in membrane proteins.
Kasimova MA, Lindahl E, Delemotte L
J. Gen. Physiol. 150 (10) 1444-1458 [2018-10-01; online 2018-08-27]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
High Cell Density Perfusion Culture has a Maintained Exoproteome and Metabolome.
Zamani L, Lundqvist M, Zhang Y, ..., Rockberg J, Chotteau V
Biotechnol J 13 (10) e1800036 [2018-10-00; online 2018-07-13]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.
Zhang C, Bidkhori G, Benfeitas R, ..., Uhlén M, Mardinoglu A
Front. Physiol. 9 (-) 1355 [2018-09-28; online 2018-09-28]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome.
Lovric A, Granér M, Bjornson E, ..., Mardinoglu A, Boren J
Sci Rep 8 (1) 14200 [2018-09-21; online 2018-09-21]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Meta-Analysis of Adiponectin as a Biomarker for the Detection of Metabolic Syndrome.
Liu Z, Liang S, Que S, ..., Zheng S, Mardinoglu A
Front. Physiol. 9 (-) 1238 [2018-09-19; online 2018-09-19]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Systematic overexpression study to find target enzymes enhancing production of terpenes in Synechocystis PCC 6803, using isoprene as a model compound.
Englund E, Shabestary K, Hudson EP, Lindberg P
Metab. Eng. 49 (-) 164-177 [2018-09-00; online 2018-07-17]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Mapping the Interface of a GPCR Dimer: A Structural Model of the A2A Adenosine and D2 Dopamine Receptor Heteromer.
Borroto-Escuela DO, Rodriguez D, Romero-Fernandez W, ..., Fuxe K, Carlsson J
Front. Pharmacol. 9 (-) 829 [2018-08-30; online 2018-08-30]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Statistical Analysis of Scanning Fluorescence Correlation Spectroscopy Data Differentiates Free from Hindered Diffusion.
Schneider F, Waithe D, Lagerholm BC, ..., Eggeling C, Fritzsche M
ACS Nano 12 (8) 8540-8546 [2018-08-28; online 2018-07-26]
Erdinc Sezgin SciLifeLab Fellow
DOI Crossref
Direct observation of rotation-coupled protein diffusion along DNA on the microsecond timescale
Marklund E, Amselem E, Kipper K, ..., Deindl S, Elf J
- - (-) - [2018-08-27; online 2018-08-27]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Role of Gln222 in Photoswitching of Aequorea Fluorescent Proteins: A Twisting and H-Bonding Affair?
Storti B, Margheritis E, Abbandonato G, ..., Nifosì R, Bizzarri R
ACS chemical biology 13 (8) 2082-2093 [2018-08-17; online 2018-06-19]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Enhanced photon collection enables four dimensional fluorescence nanoscopy of living systems.
Masullo LA, Bodén A, Pennacchietti F, ..., Ratz M, Testa I
Nat Commun 9 (1) 3281 [2018-08-16; online 2018-08-16]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Surface Display of Small Affinity Proteins on Synechocystis sp. Strain PCC 6803 Mediated by Fusion to the Major Type IV Pilin PilA1.
Cengic I, Uhlén M, Hudson EP
J. Bacteriol. 200 (16) - [2018-08-15; online 2018-07-25]
Affiliated researcher Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Novel Autotrophic Organisms Contribute Significantly to the Internal Carbon Cycling Potential of a Boreal Lake.
Peura S, Buck M, Aalto SL, ..., Nykänen H, Eiler A
MBio 9 (4) - [2018-08-14; online 2018-08-14]
Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
New enzymatic and mass spectrometric methodology for the selective investigation of gut microbiota-derived metabolites.
Ballet C, Correia MSP, Conway LP, ..., Löhr JM, Globisch D
Chem Sci 9 (29) 6233-6239 [2018-08-07; online 2018-06-28]
Affiliated researcher Daniel Globisch SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
The environmental neurotoxin β-N-methylamino-L-alanine inhibits melatonin synthesis in primary pinealocytes and a rat model.
Pierozan P, Andersson M, Brandt I, Karlsson O
Journal of pineal research 65 (1) e12488 [2018-08-00; online 2018-04-06]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Scavenging of superoxide by a membrane-bound superoxide oxidase.
Lundgren CAK, Sjöstrand D, Biner O, ..., von Ballmoos C, Högbom M
Nat. Chem. Biol. 14 (8) 788-793 [2018-08-00; online 2018-06-18]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
DOI Crossref
Interspecific variation in ploidy as a key plant trait outlining local extinction risks and community patterns in fragmented landscapes
Plue J, Kimberley A, Slotte T
Funct Ecol 32 (8) 2095-2106 [2018-08-00; online 2018-05-22]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Fast reversibly photoswitching red fluorescent proteins for live-cell RESOLFT nanoscopy.
Pennacchietti F, Serebrovskaya EO, Faro AR, ..., Mishin AS, Testa I
Nat. Methods 15 (8) 601-604 [2018-08-00; online 2018-07-09]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Disruption of A2AR-D2R Heteroreceptor Complexes After A2AR Transmembrane 5 Peptide Administration Enhances Cocaine Self-Administration in Rats.
Borroto-Escuela DO, Wydra K, Li X, ..., Filip M, Fuxe K
Mol. Neurobiol. 55 (8) 7038-7048 [2018-08-00; online 2018-01-30]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Targeted Repression of Essential Genes To Arrest Growth and Increase Carbon Partitioning and Biofuel Titers in Cyanobacteria.
Shabestary K, Anfelt J, Ljungqvist E, ..., Yao L, Hudson EP
ACS Synth. Biol. 7 (7) 1669-1675 [2018-07-20; online 2018-06-08]
Affiliated researcher Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma.
Bidkhori G, Benfeitas R, Elmas E, ..., Nielsen J, Mardinoglu A
Front. Physiol. 9 (-) 916 [2018-07-17; online 2018-07-17]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Nanoscale Spatiotemporal Diffusion Modes Measured by Simultaneous Confocal and Stimulated Emission Depletion Nanoscopy Imaging.
Schneider F, Waithe D, Galiani S, ..., Sezgin E, Eggeling C
Nano Lett. 18 (7) 4233-4240 [2018-07-11; online 2018-06-19]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Transplantation of macroencapsulated human islets within the bioartificial pancreas βAir to patients with type 1 diabetes mellitus.
Carlsson PO, Espes D, Sedigh A, ..., Olerud J, Korsgren O
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 18 (7) 1735-1744 [2018-07-00; online 2018-02-02]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
The Lsm1-7/Pat1 complex binds to stress-activated mRNAs and modulates the response to hyperosmotic shock.
Garre E, Pelechano V, Sánchez Del Pino M, Alepuz P, Sunnerhagen P
PLoS Genet 14 (7) e1007563 [2018-07-00; online 2018-07-30]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Infection with a Brazilian isolate of Zika virus generates RIG-I stimulatory RNA and the viral NS5 protein blocks type I IFN induction and signaling.
Hertzog J, Dias Junior AG, Rigby RE, ..., Kohl A, Rehwinkel J
Eur. J. Immunol. 48 (7) 1120-1136 [2018-07-00; online 2018-04-06]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Cannabinoid Type 1 Receptors Are Upregulated During Acute Activation of Brown Adipose Tissue.
Lahesmaa M, Eriksson O, Gnad T, ..., Virtanen KA, Nuutila P
Diabetes 67 (7) 1226-1236 [2018-07-00; online 2018-04-12]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Associations of monoamine oxidase A gene first exon methylation with sexual abuse and current depression in women.
Checknita D, Ekström TJ, Comasco E, ..., Tiihonen J, Hodgins S
J Neural Transm (Vienna) 125 (7) 1053-1064 [2018-07-00; online 2018-03-29]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Docking Screens for Dual Inhibitors of Disparate Drug Targets for Parkinson's Disease.
Jaiteh M, Zeifman A, Saarinen M, ..., Loza MI, Carlsson J
J Med Chem 61 (12) 5269-5278 [2018-06-28; online 2018-06-15]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Model Communities Hint at Promiscuous Metabolic Linkages between Ubiquitous Free-Living Freshwater Bacteria.
Garcia SL, Buck M, Hamilton JJ, ..., McMahon KD, Eiler A
mSphere 3 (3) - [2018-06-27; online 2018-05-30]
Affiliated researcher Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.
Rosario D, Benfeitas R, Bidkhori G, ..., Shoaie S, Mardinoglu A
Front. Physiol. 9 (-) 775 [2018-06-25; online 2018-06-25]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Complementary studies of lipid membrane dynamics using iSCAT and super-resolved fluorescence correlation spectroscopy.
Reina F, Galiani S, Shrestha D, ..., Kukura P, Eggeling C
J. Phys. D: Appl. Phys. 51 (23) 235401 [2018-06-13; online 2018-05-16]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Structure-guided approach to site-specific fluorophore labeling of the lac repressor LacI.
Kipper K, Eremina N, Marklund E, ..., Elf J, Deindl S
PLoS ONE 13 (6) e0198416 [2018-06-01; online 2018-06-01]
Affiliated researcher SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Systems biology in hepatology: approaches and applications.
Mardinoglu A, Boren J, Smith U, Uhlen M, Nielsen J
Nat Rev Gastroenterol Hepatol 15 (6) 365-377 [2018-06-00; online 2018-04-25]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Paternally expressed imprinted genes associate with hybridization barriers in Capsella.
Lafon-Placette C, Hatorangan MR, Steige KA, ..., Slotte T, Köhler C
Nat Plants 4 (6) 352-357 [2018-06-00; online 2018-05-28]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
DOI Crossref
Increasing dominance of terrigenous organic matter in circumpolar freshwaters due to permafrost thaw
Wauthy M, Rautio M, Christoffersen KS, ..., Peura S, Vincent WF
Limnol. Oceanogr. 3 (3) 186-198 [2018-06-00; online 2018-02-01]
Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Exploring the Viral Channel KcvPBCV-1 Function via Computation.
Andersson AEV, Kasimova MA, Delemotte L
J. Membr. Biol. 251 (3) 419-430 [2018-06-00; online 2018-02-23]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Elevated inflammation in association with alcohol abuse among Blacks but not Whites: results from the MIDUS biomarker study.
Ransome Y, Slopen N, Karlsson O, Williams DR
J Behav Med 41 (3) 374-384 [2018-06-00; online 2017-12-11]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Bioengineering with Endothelial Progenitor Cells Improves the Vascular Engraftment of Transplanted Human Islets.
Grapensparr L, Christoffersson G, Carlsson PO
Cell Transplant 27 (6) 948-956 [2018-06-00; online 2018-06-03]
Gustaf Christoffersson SciLifeLab Fellow
DOI Crossref
Gammaproteobacterial methanotrophs dominate methanotrophy in aerobic and anaerobic layers of boreal lake waters
Rissanen A, Saarenheimo J, Tiirola M, ..., Karvinen A, Nykänen H
Aquat. Microb. Ecol. 81 (3) 257-276 [2018-05-30; online 2018-05-30]
Affiliated researcher Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Emulsions Stabilized by Chitosan-Modified Silica Nanoparticles: pH Control of Structure-Property Relations.
Alison L, Demirörs AF, Tervoort E, ..., Vermant J, Studart AR
Langmuir 34 (21) 6147-6160 [2018-05-29; online 2018-05-17]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Publisher Correction: A DHODH inhibitor increases p53 synthesis and enhances tumor cell killing by p53 degradation blockage.
Ladds MJGW, van Leeuwen IMM, Drummond CJ, ..., McCormack E, Laín S
Nat Commun 9 (1) 2071 [2018-05-22; online 2018-05-22]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Drug Repositioning for Effective Prostate Cancer Treatment.
Turanli B, Grøtli M, Boren J, ..., Arga KY, Mardinoglu A
Front. Physiol. 9 (-) 500 [2018-05-15; online 2018-05-15]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Placental lncRNA Expression Is Associated With Prenatal Phthalate Exposure.
Machtinger R, Zhong J, Mansur A, ..., Karlsson O, Baccarelli AA
Toxicol Sci 163 (1) 116-122 [2018-05-01; online 2018-02-01]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Perfluorooctanoic acid (PFOA) exposure promotes proliferation, migration and invasion potential in human breast epithelial cells.
Pierozan P, Jerneren F, Karlsson O
Arch. Toxicol. 92 (5) 1729-1739 [2018-05-00; online 2018-03-03]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Differential susceptibility effects of oxytocin gene (OXT) polymorphisms and perceived parenting on social anxiety among adolescents.
Olofsdotter S, Åslund C, Furmark T, Comasco E, Nilsson KW
Dev Psychopathol 30 (2) 449-459 [2018-05-00; online 2017-06-13]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia.
Danielsson F, Fasterius E, Sullivan D, ..., Williams C, Lundberg E
Oncotarget 9 (28) 19730-19744 [2018-04-13; online 2018-04-13]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Modular assembly of the nucleolar pre-60S ribosomal subunit.
Sanghai ZA, Miller L, Molloy KR, ..., Chait BT, Klinge S
Nature 556 (7699) 126-129 [2018-04-05; online 2018-03-05]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Gelali E, Custodio J, Girelli G, ..., Crosetto N, Bienko M
Methods in molecular biology (Clifton, N.J.) 1766 (-) 303-333 [2018-04-02; online 2018-04-02]
Magda Bienko SciLifeLab Fellow
DOI Crossref
Whole-Lake Sugar Addition Demonstrates Trophic Transfer of Dissolved Organic Carbon to Top Consumers
Jones RI, Kankaala P, Nykänen H, ..., Rask M, Vesala S
Ecosystems 21 (3) 495-506 [2018-04-00; online 2017-06-21]
Affiliated researcher Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor.
Perez Boerema A, Aibara S, Paul B, ..., Lindahl E, Amunts A
Nat Plants 4 (4) 212-217 [2018-04-00; online 2018-04-02]
Affiliated researcher Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Permeating disciplines: Overcoming barriers between molecular simulations and classical structure-function approaches in biological ion transport.
Howard RJ, Carnevale V, Delemotte L, Hellmich UA, Rothberg BS
Biochimica et Biophysica Acta (BBA) - Biomembranes 1860 (4) 927-942 [2018-04-00; online 2017-12-16]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Nutritional preferences of human gut bacteria reveal their metabolic idiosyncrasies.
Tramontano M, Andrejev S, Pruteanu M, ..., Typas A, Patil KR
Nat. Microbiol 3 (4) 514-522 [2018-04-00; online 2018-03-19]
Aleksej Zelezniak SciLifeLab Fellow
DOI Crossref
Learning Surrogate Models of Document Image Quality Metrics for Automated Document Image Processing
Singh P, Vats E, Hast A
- - (-) - [2018-04-00; online 2018-04-00]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Gating interaction maps reveal a noncanonical electromechanical coupling mode in the Shaker K+ channel.
Fernández-Mariño AI, Harpole TJ, Oelstrom K, Delemotte L, Chanda B
Nat. Struct. Mol. Biol. 25 (4) 320-326 [2018-04-00; online 2018-03-26]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Effect of Ca2+ on the promiscuous target-protein binding of calmodulin.
Westerlund AM, Delemotte L
PLoS Comput Biol 14 (4) e1006072 [2018-04-00; online 2018-04-03]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Conformational landscapes of membrane proteins delineated by enhanced sampling molecular dynamics simulations.
Harpole TJ, Delemotte L
Biochimica et Biophysica Acta (BBA) - Biomembranes 1860 (4) 909-926 [2018-04-00; online 2017-11-04]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Combined ASRGL1 and p53 immunohistochemistry as an independent predictor of survival in endometrioid endometrial carcinoma.
Huvila J, Laajala TD, Edqvist PH, ..., Aittokallio T, Auranen A
Gynecol. Oncol. 149 (1) 173-180 [2018-04-00; online 2018-03-02]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Assembly and structure of the SSU processome-a nucleolar precursor of the small ribosomal subunit.
Barandun J, Hunziker M, Klinge S
Curr. Opin. Struct. Biol. 49 (-) 85-93 [2018-04-00; online 2018-02-04]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in Capsella.
Bachmann JA, Tedder A, Laenen B, Steige KA, Slotte T
G3 8 (4) 1327-1333 [2018-03-28; online 2018-03-28]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Suppression of diabetes by accumulation of non-islet-specific CD8 + effector T cells in pancreatic islets.
Christoffersson G, Chodaczek G, Ratliff SS, Coppieters K, von Herrath MG
Sci Immunol 3 (21) - [2018-03-23; online 2018-03-25]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Maltreatment, the Oxytocin Receptor Gene, and Conduct Problems Among Male and Female Teenagers.
Andreou D, Comasco E, Åslund C, Nilsson KW, Hodgins S
Front. Hum. Neurosci. 12 (-) 112 [2018-03-22; online 2018-03-22]
Affiliated researcher Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Spironaphthoxazine switchable dyes for biological imaging.
Xiong Y, Vargas Jentzsch A, Osterrieth JWM, ..., Eggeling C, Anderson HL
Chem Sci 9 (11) 3029-3040 [2018-03-21; online 2018-02-20]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
A DHODH inhibitor increases p53 synthesis and enhances tumor cell killing by p53 degradation blockage.
Ladds MJGW, van Leeuwen IMM, Drummond CJ, ..., McCormack E, Laín S
Nat Commun 9 (1) 1107 [2018-03-16; online 2018-03-16]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
An Integrated Understanding of the Rapid Metabolic Benefits of a Carbohydrate-Restricted Diet on Hepatic Steatosis in Humans.
Mardinoglu A, Wu H, Bjornson E, ..., Taskinen MR, Borén J
Cell Metab. 27 (3) 559-571.e5 [2018-03-06; online 2018-02-15]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
The neutrophil: one cell on many missions or many cells with different agendas?
Christoffersson G, Phillipson M
Cell Tissue Res. 371 (3) 415-423 [2018-03-00; online 2018-02-12]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Fluorescent Diarylethene Photoswitches-A Universal Tool for Super-Resolution Microscopy in Nanostructured Materials.
Nevskyi O, Sysoiev D, Dreier J, ..., Huhn T, Wöll D
Small 14 (10) 1703333 [2018-03-00; online 2018-01-11]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations.
Garcia SL, Stevens SLR, Crary B, ..., Malmstrom RR, McMahon KD
ISME J 12 (3) 742-755 [2018-03-00; online 2017-12-08]
Affiliated researcher Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Associations Between MAOA-uVNTR Genotype, Maltreatment, MAOA Methylation, and Alcohol Consumption in Young Adult Males.
Bendre M, Comasco E, Checknita D, ..., Hodgins S, Nilsson KW
Alcohol Clin Exp Res 42 (3) 508-519 [2018-03-00; online 2018-01-31]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Integrative Personal Omics Profiles during Periods of Weight Gain and Loss.
Piening BD, Zhou W, Contrepois K, ..., Weinstock GM, Snyder MP
Cell Systems 6 (2) 157-170.e8 [2018-02-28; online 2018-01-17]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Identification of Discriminating Metabolic Pathways and Metabolites in Human PBMCs Stimulated by Various Pathogenic Agents.
Zhang X, Mardinoglu A, Joosten LAB, ..., Netea MG, Groen AK
Front. Physiol. 9 (-) 139 [2018-02-27; online 2018-02-27]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Prediction of Ordered Water Molecules in Protein Binding Sites from Molecular Dynamics Simulations: The Impact of Ligand Binding on Hydration Networks.
Rudling A, Orro A, Carlsson J
J Chem Inf Model 58 (2) 350-361 [2018-02-26; online 2018-02-05]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
DOI Crossref
Interferometric scattering (iSCAT) microscopy: studies of biological membrane dynamics
Reina F, Galiani S, Shrestha D, ..., Eggeling C, Cole D
- - (-) - [2018-02-20; online 2018-02-20]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
PFOS induces proliferation, cell-cycle progression, and malignant phenotype in human breast epithelial cells.
Pierozan P, Karlsson O
Arch. Toxicol. 92 (2) 705-716 [2018-02-00; online 2017-10-23]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
In Vivo Visualization of β-Cells by Targeting of GPR44.
Eriksson O, Johnström P, Cselenyi Z, ..., Skrtic S, Korsgren O
Diabetes 67 (2) 182-192 [2018-02-00; online 2017-12-05]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Evaluation of Post-Mortem Effects on Global Brain DNA Methylation and Hydroxymethylation.
Sjöholm LK, Ransome Y, Ekström TJ, Karlsson O
Basic Clin. Pharmacol. Toxicol. 122 (2) 208-213 [2018-02-00; online 2017-11-13]
Oskar Karlsson SciLifeLab Fellow
DOI Crossref
Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA
Ahmed E, Parducci L, Unneberg P, ..., Slotte T, Wohlfarth B
Quaternary Science Reviews 181 (-) 19-29 [2018-02-00; online 2018-02-00]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Structural elucidation of major selective androgen receptor modulator (SARM) metabolites for doping control.
Garg N, Hansson A, Knych HK, ..., Hedeland M, Globisch D
Org. Biomol. Chem. 16 (5) 698-702 [2018-01-31; online 2018-01-11]
Affiliated researcher Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Broad Views of Non-alcoholic Fatty Liver Disease.
Mardinoglu A, Uhlen M, Borén J
Cell Systems 6 (1) 7-9 [2018-01-24; online 2018-02-06]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina.
Laenen B, Tedder A, Nowak MD, ..., Coupland G, Slotte T
Proc. Natl. Acad. Sci. U.S.A. 115 (4) 816-821 [2018-01-23; online 2018-01-04]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Translational study reveals a two-faced role of RBM3 in pancreatic cancer and suggests its potential value as a biomarker for improved patient stratification.
Karnevi E, Dror LB, Mardinoglu A, ..., Uhlén M, Jirström K
Oncotarget 9 (5) 6188-6200 [2018-01-19; online 2017-12-15]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Consequences of Epithelial Inflammasome Activation by Bacterial Pathogens.
Sellin ME, Müller AA, Hardt WD
J. Mol. Biol. 430 (2) 193-206 [2018-01-19; online 2017-04-25]
Affiliated researcher Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Increased Expression of GLP-1R in Proliferating Islets of Men1 Mice is Detectable by [68Ga]Ga-DO3A-VS-Cys40-Exendin-4 /PET.
Monazzam A, Lau J, Velikyan I, ..., Eriksson O, Skogseid B
Sci Rep 8 (1) 748 [2018-01-15; online 2018-01-15]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Inference of Calmodulin's Ca2+-Dependent Free Energy Landscapes via Gaussian Mixture Model Validation.
Westerlund AM, Harpole TJ, Blau C, Delemotte L
J Chem Theory Comput 14 (1) 63-71 [2018-01-09; online 2017-12-06]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
TCSBN: a database of tissue and cancer specific biological networks.
Lee S, Zhang C, Arif M, ..., Uhlen M, Mardinoglu A
Nucleic Acids Res. 46 (D1) D595-D600 [2018-01-04; online 2017-10-27]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Glyoxal as an alternative fixative to formaldehyde in immunostaining and super-resolution microscopy.
Richter KN, Revelo NH, Seitz KJ, ..., Zapiec B, Rizzoli SO
EMBO J. 37 (1) 139-159 [2018-01-04; online 2017-11-16]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Thermodynamic analysis of computed pathways integrated into the metabolic networks of E. coli and Synechocystis reveals contrasting expansion potential.
Asplund-Samuelsson J, Janasch M, Hudson EP
Metab. Eng. 45 (-) 223-236 [2018-01-00; online 2017-12-24]
Affiliated researcher Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
The evolutionary fate of heterogeneous gene duplications: A precarious overdominant equilibrium between environment, sublethality and complementation.
Milesi P, Assogba BS, Atyame CM, ..., Weill M, Labbé P
Mol. Ecol. 27 (2) 493-507 [2018-01-00; online 2017-12-29]
Affiliated researcher Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
The environmental neurotoxin β-N-methylamino-l-alanine (l-BMAA) is deposited into birds' eggs.
Andersson M, Karlsson O, Brandt I
Ecotoxicology and Environmental Safety 147 (-) 720-724 [2018-01-00; online 2017-09-20]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates.
Strassert JFH, Karnkowska A, Hehenberger E, ..., Santoro AE, Keeling PJ
ISME J 12 (1) 304-308 [2018-01-00; online 2017-10-10]
Affiliated researcher Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Personality as an intermediate phenotype for genetic dissection of alcohol use disorder.
Oreland L, Lagravinese G, Toffoletto S, ..., Robert Cloninger C, Comasco E
J Neural Transm (Vienna) 125 (1) 107-130 [2018-01-00; online 2017-01-04]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Pancreatic imaging using an antibody fragment targeting the zinc transporter type 8: a direct comparison with radio-iodinated Exendin-4.
Eriksson O, Korsgren O, Selvaraju RK, ..., Chimienti F, Altai M
Acta diabetologica 55 (1) 49-57 [2018-01-00; online 2017-10-24]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Neurological and neuropsychological effects of low and moderate prenatal alcohol exposure.
Comasco E, Rangmar J, Eriksson UJ, Oreland L
Acta Physiol 222 (1) e12892 [2018-01-00; online 2017-05-30]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Letter: dose-response analysis revealed closer relationship between obesity and perioperative outcomes in patients after liver transplantation.
Liu Z, Mardinoglu A, Que S
Aliment. Pharmacol. Ther. 47 (2) 310-312 [2018-01-00; online 2017-12-22]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Elevated Plasma Levels of 3-Hydroxyisobutyric Acid Are Associated With Incident Type 2 Diabetes.
Mardinoglu A, Gogg S, Lotta LA, ..., Laakso M, Smith U
EBioMedicine 27 (-) 151-155 [2018-01-00; online 2017-12-07]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Diversion of the long-chain acyl-ACP pool in Synechocystis to fatty alcohols through CRISPRi repression of the essential phosphate acyltransferase PlsX.
Kaczmarzyk D, Cengic I, Yao L, Hudson EP
Metab. Eng. 45 (-) 59-66 [2018-01-00; online 2017-12-02]
Affiliated researcher Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Divergence of a Tandem Duplication of Manganese Superoxide Dismutase in Nosema bombycis.
Wang Y, Zhang R, Barandun J, ..., Vossbrinck CR, Xiang H
J. Eukaryot. Microbiol. 65 (1) 93-103 [2018-01-00; online 2017-08-07]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Generation of Stable Amber Suppression Cell Lines
Elsässer SJ
Methods in molecular biology (Clifton, N.J.) 1728 (-) 237-245 [2018-00-00; online 2018-02-06]
SciLifeLab Fellow Simon Elsässer

Year 2017

PubMed DOI Crossref
Normal values for calprotectin in stool samples of infants from the population-based longitudinal born into life study.
Peura S, Fall T, Almqvist C, ..., Helmersson-Karlqvist J, Larsson A
Scandinavian Journal of Clinical and Laboratory Investigation 78 (1-2) 120-124 [2017-12-28; online 2017-12-28]
Affiliated researcher Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Mechanistic Insights into Autoinhibition of the Oncogenic Chromatin Remodeler ALC1.
Lehmann LC, Hewitt G, Aibara S, ..., Boulton SJ, Deindl S
Mol. Cell 68 (5) 847-859.e7 [2017-12-07; online 2017-12-09]
Affiliated researcher SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Investigation of the Intra- and Interlaboratory Reproducibility of a Small Scale Standardized Supersaturation and Precipitation Method.
Plum J, Madsen CM, Teleki A, ..., Rades T, Müllertz A
Mol. Pharm. 14 (12) 4161-4169 [2017-12-04; online 2017-11-07]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction.
Janouškovec J, Tikhonenkov DV, Burki F, ..., Mylnikov AP, Keeling PJ
Curr. Biol. 27 (23) 3717-3724.e5 [2017-12-04; online 2017-11-22]
Affiliated researcher Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
COMT genotype and non-recovery after a whiplash injury in a Northern European population.
Rydman E, Comasco E, Pettersson H, ..., Ponzer S, Ottosson C
BMC Musculoskelet Disord 18 (1) 507 [2017-12-01; online 2017-12-01]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Surrogate assisted model reduction for stochastic biochemical reaction networks
Singh P, Hellander A
- - (-) - [2017-12-00; online 2017-12-00]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
From transcriptional complexity to cellular phenotypes: Lessons from yeast.
Pelechano V
Yeast 34 (12) 475-482 [2017-12-00; online 2017-10-11]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Evolution of epigenetic chromatin states
Yung PYK, Elsässer SJ
Current Opinion in Chemical Biology 41 (-) 36-42 [2017-12-00; online 2017-12-00]
Affiliated researcher SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Biodiversity, drug discovery, and the future of global health: Introducing the biodiversity to biomedicine consortium, a call to action.
Neergheen-Bhujun V, Awan AT, Baran Y, ..., Pešić M, Kagansky A
Journal of global health 7 (2) 020304 [2017-12-00; online 2018-01-06]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
An essential regulatory function of the DnaK chaperone dictates the decision between proliferation and maintenance in Caulobacter crescentus.
Schramm FD, Heinrich K, Thüring M, Bernhardt J, Jonas K
PLoS Genet 13 (12) e1007148 [2017-12-00; online 2017-12-27]
Affiliated researcher Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
HDL particles incorporate into lipid bilayers - a combined AFM and single molecule fluorescence microscopy study.
Plochberger B, Röhrl C, Preiner J, ..., Stangl H, Schütz GJ
Sci Rep 7 (1) 15886 [2017-11-21; online 2017-11-21]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
The emergence of piRNAs against transposon invasion to preserve mammalian genome integrity.
Ernst C, Odom DT, Kutter C
Nat Commun 8 (1) 1411 [2017-11-10; online 2017-11-10]
Affiliated researcher Claudia Kutter SciLifeLab Fellow
DOI Crossref
Automatic Document Image Binarization using Bayesian Optimization
Vats E, Hast A, Singh P
- - (-) - [2017-11-10; online 2017-11-10]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Cryo-EM reconstruction of the chlororibosome to 3.2 Å resolution within 24 h.
Forsberg BO, Aibara S, Kimanius D, ..., Lindahl E, Amunts A
IUCrJ 4 (Pt 6) 723-727 [2017-11-01; online 2017-09-22]
Affiliated researcher Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
The complete structure of the small-subunit processome.
Barandun J, Chaker-Margot M, Hunziker M, ..., Chait BT, Klinge S
Nat. Struct. Mol. Biol. 24 (11) 944-953 [2017-11-00; online 2017-09-25]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
The acute effects of ultraviolet radiation on the blood transcriptome are independent of plasma 25OHD3.
Bustamante M, Hernandez-Ferrer C, Sarria Y, ..., Nieuwenhuijsen M, Young AR
Environ. Res. 159 (-) 239-248 [2017-11-00; online 2017-09-18]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Species differences in pancreatic binding of DO3A-VS-Cys 40-Exendin4.
Eriksson O, Rosenström U, Selvaraju RK, Eriksson B, Velikyan I
Acta diabetologica 54 (11) 1039-1045 [2017-11-00; online 2017-09-11]
Olof Eriksson SciLifeLab Fellow
DOI Crossref
Constrained multi-objective antenna design optimization using surrogates
Singh P, Rossi M, Couckuyt I, ..., Rogier H, Dhaene T
Int J Numer Model 30 (6) e2248 [2017-11-00; online 2017-05-04]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Studying Kv Channels Function using Computational Methods.
Deyawe A, Kasimova MA, Delemotte L, Loussouarn G, Tarek M
Methods in molecular biology (Clifton, N.J.) 1684 (-) 321-341 [2017-10-24; online 2017-10-24]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Structure-Guided Screening for Functionally Selective D2 Dopamine Receptor Ligands from a Virtual Chemical Library.
Männel B, Jaiteh M, Zeifman A, ..., Gmeiner P, Carlsson J
ACS chemical biology 12 (10) 2652-2661 [2017-10-20; online 2017-09-19]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R, Kallas T, Bienko M, Crosetto N
Methods in molecular biology (Clifton, N.J.) 1672 (-) 167-194 [2017-10-19; online 2017-10-19]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Multiplexed ChIP-Seq Using Direct Nucleosome Barcoding: A Tool for High-Throughput Chromatin Analysis.
Chabbert CD, Adjalley SH, Steinmetz LM, Pelechano V
Methods in molecular biology (Clifton, N.J.) 1689 (-) 177-194 [2017-10-14; online 2017-10-14]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Signatures of positive selection reveal a universal role of chromatin modifiers as cancer driver genes.
Zapata L, Susak H, Drechsel O, ..., Estivill X, Ossowski S
Sci Rep 7 (1) 13124 [2017-10-13; online 2017-10-13]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Fragment-Based Discovery and Optimization of Enzyme Inhibitors by Docking of Commercial Chemical Space.
Rudling A, Gustafsson R, Almlöf I, ..., Stenmark P, Carlsson J
J Med Chem 60 (19) 8160-8169 [2017-10-12; online 2017-10-03]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
The Role of Small RNA-Based Epigenetic Silencing for Purifying Selection on Transposable Elements in Capsella grandiflora.
Horvath R, Slotte T
Genome Biol Evol 9 (10) 2911-2920 [2017-10-01; online 2017-10-17]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Differential Impact of Glucose Administered Intravenously and Orally on Circulating miR-375 Levels in Human Subjects.
Yan X, Wang Z, Westberg-Rasmussen S, ..., Gregersen S, Poy MN
J. Clin. Endocrinol. Metab. 102 (10) 3749-3755 [2017-10-01; online 2017-10-04]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
The tyrosine Y2502.39 in Frizzled 4 defines a conserved motif important for structural integrity of the receptor and recruitment of Disheveled.
Strakova K, Matricon P, Yokota C, ..., Bryja V, Schulte G
Cell. Signal. 38 (-) 85-96 [2017-10-00; online 2017-06-29]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Structures of the human mitochondrial ribosome in native states of assembly.
Brown A, Rathore S, Kimanius D, ..., Amunts A, Ramakrishnan V
Nat. Struct. Mol. Biol. 24 (10) 866-869 [2017-10-00; online 2017-09-11]
Affiliated researcher Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Rediscussion on linearity between fibrosis stages and mortality risk in nonalcoholic fatty liver disease patients.
Liu Z, Que S, Mardinoglu A
Hepatology 66 (4) 1357-1358 [2017-10-00; online 2017-09-04]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
Multi-objective Geometry Optimization of a Gas Cyclone Using Triple-Fidelity Co-Kriging Surrogate Models
Singh P, Couckuyt I, Elsayed K, Deschrijver D, Dhaene T
J Optim Theory Appl 175 (1) 172-193 [2017-10-00; online 2017-05-10]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Maternal and female fetal testosterone levels are associated with maternal age and gestational weight gain.
Kallak TK, Hellgren C, Skalkidou A, ..., Campbell RE, Sundström Poromaa I
Eur. J. Endocrinol. 177 (4) 379-388 [2017-10-00; online 2017-07-13]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Improving the economics of NASH/NAFLD treatment through the use of systems biology.
Bosley J, Boren C, Lee S, ..., Boren J, Mardinoglu A
Drug Discov. Today 22 (10) 1532-1538 [2017-10-00; online 2017-07-20]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus.
Matzov D, Aibara S, Basu A, ..., Amunts A, Yonath AE
Nat Commun 8 (1) 723 [2017-09-28; online 2017-09-28]
Affiliated researcher Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
The ribosome assembly gene network is controlled by the feedback regulation of transcription elongation.
Gómez-Herreros F, Margaritis T, Rodríguez-Galán O, ..., Holstege FCP, Chávez S
Nucleic Acids Res. 45 (16) 9302-9318 [2017-09-19; online 2017-06-24]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Polarity-Sensitive Probes for Superresolution Stimulated Emission Depletion Microscopy.
Sezgin E, Schneider F, Zilles V, ..., Klymchenko AS, Eggeling C
Biophys. J. 113 (6) 1321-1330 [2017-09-19; online 2017-07-19]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Vascular sprouts induce local attraction of proangiogenic neutrophils.
Christoffersson G, Lomei J, O'Callaghan P, ..., Engblom S, Phillipson M
J Leukoc Biol 102 (3) 741-751 [2017-09-00; online 2017-06-05]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Metformin treatment significantly enhances intestinal glucose uptake in patients with type 2 diabetes: Results from a randomized clinical trial.
Koffert JP, Mikkola K, Virtanen KA, ..., Gomez MF, Nuutila P
Diabetes Res. Clin. Pract. 131 (-) 208-216 [2017-09-00; online 2017-07-20]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI.
Hamilton JJ, Garcia SL, Brown BS, ..., Forest KT, McMahon KD
mSystems 2 (4) - [2017-08-29; online 2017-08-29]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
The effect of the TM6SF2 E167K variant on liver steatosis and fibrosis in patients with chronic hepatitis C: a meta-analysis.
Liu Z, Que S, Zhou L, ..., Mardinoglu A, Valenti L
Sci Rep 7 (1) 9273 [2017-08-24; online 2017-08-24]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Network analyses identify liver-specific targets for treating liver diseases.
Lee S, Zhang C, Liu Z, ..., Boren J, Mardinoglu A
Mol Syst Biol 13 (8) 938 [2017-08-21; online 2017-08-21]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
A pathology atlas of the human cancer transcriptome.
Uhlen M, Zhang C, Lee S, ..., Mardinoglu A, Ponten F
Science (New York, N.Y.) 357 (6352) eaan2507 [2017-08-18; online 2017-08-19]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Agonist-induced dimer dissociation as a macromolecular step in G protein-coupled receptor signaling.
Petersen J, Wright SC, Rodríguez D, ..., Carlsson J, Schulte G
Nat Commun 8 (1) 226 [2017-08-09; online 2017-08-09]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Elsässer et al. reply.
Elsässer SJ, Noh KM, Diaz N, Allis CD, Banaszynski LA
Nature 548 (7665) E7-E9 [2017-08-02; online 2017-08-05]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Validation of onchocerciasis biomarker N-acetyltyramine-O-glucuronide (NATOG).
Globisch D, Eubanks LM, Shirey RJ, ..., Hoerauf A, Janda KD
Bioorg. Med. Chem. Lett. 27 (15) 3436-3440 [2017-08-01; online 2017-05-29]
Affiliated researcher Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
The expression of opioid genes in non-classical reward areas depends on early life conditions and ethanol intake.
Granholm L, Todkar A, Bergman S, ..., Comasco E, Nylander I
Brain Res 1668 (-) 36-45 [2017-08-01; online 2017-05-13]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Plasma Mannose Levels Are Associated with Incident Type 2 Diabetes and Cardiovascular Disease.
Mardinoglu A, Stančáková A, Lotta LA, ..., Langenberg C, Smith U
Cell Metab. 26 (2) 281-283 [2017-08-01; online 2017-08-03]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
Vimentin deficiency in macrophages induces CD36-mediated inflammation
Håversen L, Ståhlman M, Mattson Hultén L, ..., Levin M, Borén J
Atherosclerosis 263 (-) e87-e88 [2017-08-00; online 2017-08-00]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Poorly known microbial taxa dominate the microbiome of permafrost thaw ponds.
Wurzbacher C, Nilsson RH, Rautio M, Peura S
ISME J 11 (8) 1938-1941 [2017-08-00; online 2017-04-21]
Affiliated researcher Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Heterogeneous gene duplications can be adaptive because they permanently associate overdominant alleles.
Milesi P, Weill M, Lenormand T, Labbé P
Evol Lett 1 (3) 169-180 [2017-08-00; online 2017-07-21]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Binding of canonical Wnt ligands to their receptor complexes occurs in ordered plasma membrane environments.
Sezgin E, Azbazdar Y, Ng XW, ..., Eggeling C, Ozhan G
FEBS J. 284 (15) 2513-2526 [2017-08-00; online 2017-07-06]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Allopregnanolone levels and depressive symptoms during pregnancy in relation to single nucleotide polymorphisms in the allopregnanolone synthesis pathway.
Hellgren C, Comasco E, Skalkidou A, Sundström-Poromaa I
Horm Behav 94 (-) 106-113 [2017-08-00; online 2017-07-20]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
A Biopsychosocial Approach to Risk and Resilience on Behavior in Children Followed from Birth to Age 12.
Agnafors S, Svedin CG, Oreland L, ..., Comasco E, Sydsjö G
Child Psychiatry Hum Dev 48 (4) 584-596 [2017-08-00; online 2016-09-16]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Molecular simulations and free-energy calculations suggest conformation-dependent anion binding to a cytoplasmic site as a mechanism for Na+/K+-ATPase ion selectivity.
Razavi AM, Delemotte L, Berlin JR, Carnevale V, Voelz VA
J Biol Chem 292 (30) 12412-12423 [2017-07-28; online 2017-06-06]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Fragment optimization for GPCRs by molecular dynamics free energy calculations: Probing druggable subpockets of the A 2A adenosine receptor binding site.
Matricon P, Ranganathan A, Warnick E, ..., Jacobson KA, Carlsson J
Sci Rep 7 (1) 6398 [2017-07-25; online 2017-07-25]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed
Fully automated GMP production of [68Ga]Ga-DO3A-VS-Cys40-Exendin-4 for clinical use.
Velikyan I, Rosenstrom U, Eriksson O
American journal of nuclear medicine and molecular imaging 7 (3) 111-125 [2017-07-15; online 2017-07-15]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Combined PET and microdialysis for in vivo estimation of drug blood-brain barrier transport and brain unbound concentrations.
Gustafsson S, Eriksson J, Syvänen S, ..., Hammarlund-Udenaes M, Antoni G
NeuroImage 155 (-) 177-186 [2017-07-15; online 2017-04-30]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Selection of complementary foods based on optimal nutritional values.
Sen P, Mardinogulu A, Nielsen J
Sci Rep 7 (1) 5413 [2017-07-14; online 2017-07-14]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Super-resolution optical microscopy for studying membrane structure and dynamics.
Sezgin E
J Phys Condens Matter 29 (27) 273001 [2017-07-12; online 2017-05-08]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
New Challenges to Study Heterogeneity in Cancer Redox Metabolism.
Benfeitas R, Uhlen M, Nielsen J, Mardinoglu A
Front Cell Dev Biol 5 (-) 65 [2017-07-11; online 2017-07-11]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization.
Alam MT, Olin-Sandoval V, Stincone A, ..., Luisi BF, Ralser M
Nat Commun 8 (-) 16018 [2017-07-10; online 2017-07-10]
Aleksej Zelezniak SciLifeLab Fellow
PubMed DOI Crossref
eIF5A facilitates translation termination globally and promotes the elongation of many non polyproline-specific tripeptide sequences.
Pelechano V, Alepuz P
Nucleic Acids Res. 45 (12) 7326-7338 [2017-07-07; online 2017-05-27]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Effects of alternative electron acceptors on the activity and community structure of methane-producing and consuming microbes in the sediments of two shallow boreal lakes.
Rissanen AJ, Karvinen A, Nykänen H, ..., Mäki A, Kankaala P
FEMS Microbiol. Ecol. 93 (7) - [2017-07-01; online 2017-06-24]
Affiliated researcher Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Toward molecular imaging of the free fatty acid receptor 1.
Hellström-Lindahl E, Åberg O, Ericsson C, ..., Skrtic S, Eriksson O
Acta diabetologica 54 (7) 663-668 [2017-07-00; online 2017-04-13]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
A dynamic and adaptive network of cytosolic interactions governs protein export by the T3SS injectisome.
Diepold A, Sezgin E, Huseyin M, ..., Eggeling C, Armitage JP
Nat Commun 8 (-) 15940 [2017-06-27; online 2017-06-27]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Diffusion of lipids and GPI-anchored proteins in actin-free plasma membrane vesicles measured by STED-FCS.
Schneider F, Waithe D, Clausen MP, ..., Eggeling C, Sezgin E
Mol. Biol. Cell 28 (11) 1507-1518 [2017-06-01; online 2017-04-12]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
The mystery of membrane organization: composition, regulation and roles of lipid rafts.
Sezgin E, Levental I, Mayor S, Eggeling C
Nat. Rev. Mol. Cell Biol. 18 (6) 361-374 [2017-06-00; online 2017-03-30]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.
Sahlin K, Frånberg M, Arvestad L
J. Comput. Biol. 24 (6) 581-589 [2017-06-00; online 2016-09-28]
Affiliated researcher Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
A subcellular map of the human proteome.
Thul PJ, Åkesson L, Wiking M, ..., Uhlén M, Lundberg E
Science (New York, N.Y.) 356 (6340) eaal3321 [2017-05-26; online 2017-05-11]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Multifractal and mechanical analysis of amorphous solid dispersions.
Adler C, Teleki A, Kuentz M
Int J Pharm 523 (1) 91-101 [2017-05-15; online 2017-03-09]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Spectral imaging toolbox: segmentation, hyperstack reconstruction, and batch processing of spectral images for the determination of cell and model membrane lipid order.
Aron M, Browning R, Carugo D, ..., Eggeling C, Stride E
BMC Bioinformatics 18 (1) 254 [2017-05-12; online 2017-05-12]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Yan WX, Mirzazadeh R, Garnerone S, ..., Bienko M, Crosetto N
Nat Commun 8 (1) 15058 [2017-05-12; online 2017-05-12]
Affiliated researcher Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Phase Partitioning of GM1 and Its Bodipy-Labeled Analog Determine Their Different Binding to Cholera Toxin.
Rissanen S, Grzybek M, Orłowski A, ..., Sezgin E, Vattulainen I
Front. Physiol. 8 (-) 252 [2017-05-09; online 2017-05-09]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
[ 11C]5-hydroxy-tryptophan PET for Assessment of Islet Mass During Progression of Type 2 Diabetes.
Carlbom L, Espes D, Lubberink M, ..., Korsgren O, Eriksson O
Diabetes 66 (5) 1286-1292 [2017-05-00; online 2017-02-28]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
High-avidity IgA protects the intestine by enchaining growing bacteria.
Moor K, Diard M, Sellin ME, ..., Hardt WD, Slack E
Nature 544 (7651) 498-502 [2017-04-27; online 2017-04-12]
Affiliated researcher Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Does Proton Conduction in the Voltage-Gated H+ Channel hHv1 Involve Grotthuss-Like Hopping via Acidic Residues?
van Keulen SC, Gianti E, Carnevale V, ..., Rothlisberger U, Delemotte L
J Phys Chem B 121 (15) 3340-3351 [2017-04-20; online 2016-11-18]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
A Fluorophore Fusion Construct of Human Profilin I with Non-Compromised Poly(L-Proline) Binding Capacity Suitable for Imaging.
Nejedla M, Li Z, Masser AE, ..., Friedländer MR, Karlsson R
J. Mol. Biol. 429 (7) 964-976 [2017-04-07; online 2017-01-08]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Laurdan and Di-4-ANEPPDHQ probe different properties of the membrane.
Amaro M, Reina F, Hof M, Eggeling C, Sezgin E
J. Phys. D: Appl. Phys. 50 (13) 134004 [2017-04-05; online 2017-03-07]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Survey of 800+ data sets from human tissue and body fluid reveals xenomiRs are likely artifacts.
Kang W, Bang-Berthelsen CH, Holm A, ..., Estivill X, Friedländer MR
RNA 23 (4) 433-445 [2017-04-00; online 2017-01-06]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
DOI Crossref
Automated Line-Based Sequential Sampling and Modeling Algorithm for EMC Near-Field Scanning
Singh P, Claeys T, Vandenbosch GAE, Pissoort D
IEEE Trans. Electromagn. Compat. 59 (2) 704-709 [2017-04-00; online 2017-04-00]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
AUP1 (Ancient Ubiquitous Protein 1): A Molecular Link Between Hepatic Lipid Mobilization and VLDL Secretion.
Mardinoglu A, Borén J
Arterioscler. Thromb. Vasc. Biol. 37 (4) 609-610 [2017-04-00; online 2017-03-24]
Adil Mardinoglu SciLifeLab Fellow
DOI Crossref
A sequential sampling strategy for adaptive classification of computationally expensive data
Singh P, Herten Jvd, Deschrijver D, Couckuyt I, Dhaene T
Struct Multidisc Optim 55 (4) 1425-1438 [2017-04-00; online 2016-09-22]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Electroformation of Giant Unilamellar Vesicles on Stainless Steel Electrodes.
Pereno V, Carugo D, Bau L, ..., Eggeling C, Stride E
ACS Omega 2 (3) 994-1002 [2017-03-31; online 2017-03-16]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization.
Annaratone L, Simonetti M, Wernersson E, ..., Sapino A, Crosetto N
Oncotarget 8 (12) 18680-18698 [2017-03-21; online 2017-04-21]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Ligand Discovery for a Peptide-Binding GPCR by Structure-Based Screening of Fragment- and Lead-Like Chemical Libraries.
Ranganathan A, Heine P, Rudling A, ..., Kummer L, Carlsson J
ACS chemical biology 12 (3) 735-745 [2017-03-17; online 2017-01-24]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Inflammation boosts bacteriophage transfer between Salmonella spp.
Diard M, Bakkeren E, Cornuault JK, ..., Slack E, Hardt WD
Science (New York, N.Y.) 355 (6330) 1211-1215 [2017-03-17; online 2017-03-16]
Affiliated researcher Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Emotional anticipation after delivery - a longitudinal neuroimaging study of the postpartum period.
Gingnell M, Toffoletto S, Wikström J, ..., Comasco E, Sundström-Poromaa I
Sci Rep 7 (1) 114 [2017-03-08; online 2017-03-08]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Personal model-assisted identification of NAD+ and glutathione metabolism as intervention target in NAFLD.
Mardinoglu A, Bjornson E, Zhang C, ..., Taskinen MR, Boren J
Mol Syst Biol 13 (3) 916 [2017-03-02; online 2017-03-02]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Ethanol affects limbic and striatal presynaptic glutamatergic and DNA methylation gene expression in outbred rats exposed to early-life stress.
Vrettou M, Granholm L, Todkar A, ..., Nylander I, Comasco E
Addict Biol 22 (2) 369-380 [2017-03-00; online 2015-11-27]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Development of a novel therapeutic vaccine carrier that sustains high antibody titers against several targets simultaneously.
Saupe F, Reichel M, Huijbers EJ, ..., Hellman LT, Olsson AK
FASEB J. 31 (3) 1204-1214 [2017-03-00; online 2016-12-19]
Affiliated researcher SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Understanding the Role of GPCR Heteroreceptor Complexes in Modulating the Brain Networks in Health and Disease.
Borroto-Escuela DO, Carlsson J, Ambrogini P, ..., Diaz-Cabiale Z, Fuxe K
Front. Cell. Neurosci. 11 (-) 37 [2017-02-21; online 2017-02-21]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Genetic and Functional Study of L-Type Amino Acid Transporter 1 in Schizophrenia.
Comasco E, Vumma R, Toffoletto S, ..., Jönsson EG, Venizelos N
Neuropsychobiology 74 (2) 96-103 [2017-02-11; online 2017-02-11]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
The structure of the yeast mitochondrial ribosome.
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (New York, N.Y.) 355 (6324) 528-531 [2017-02-03; online 2017-02-06]
Affiliated researcher Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Prokaryotic ubiquitin-like protein remains intrinsically disordered when covalently attached to proteasomal target proteins.
Barandun J, Damberger FF, Delley CL, ..., Allain FH, Weber-Ban E
BMC Struct. Biol. 17 (1) 1 [2017-02-01; online 2017-02-01]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Multifractal Characterization of Pharmaceutical Hot-Melt Extrudates.
Adler C, Teleki A, Kuentz M
Pharm. Res. 34 (2) 321-332 [2017-02-00; online 2016-11-14]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Predicting growth of the healthy infant using a genome scale metabolic model.
Nilsson A, Mardinoglu A, Nielsen J
NPJ Syst Biol Appl 3 (1) 3 [2017-01-31; online 2017-01-31]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora.
Steige KA, Laenen B, Reimegård J, Scofield DG, Slotte T
Proc. Natl. Acad. Sci. U.S.A. 114 (5) 1087-1092 [2017-01-31; online 2017-01-17]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Vimentin Levels and Serine 71 Phosphorylation in the Control of Cell-Matrix Adhesions, Migration Speed, and Shape of Transformed Human Fibroblasts.
Terriac E, Coceano G, Mavajian Z, ..., Lautenschläger F, Gad AK
Cells 6 (1) 2 [2017-01-22; online 2017-01-22]
Affiliated researcher Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Affibody Scaffolds Improve Sesquiterpene Production in Saccharomyces cerevisiae.
Tippmann S, Anfelt J, David F, ..., Nielsen J, Hudson EP
ACS Synth. Biol. 6 (1) 19-28 [2017-01-20; online 2016-08-30]
Affiliated researcher Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
Architecture of the yeast small subunit processome.
Chaker-Margot M, Barandun J, Hunziker M, Klinge S
Science 355 (6321) - [2017-01-13; online 2016-12-15]
Jonas Barandun SciLifeLab Fellow
DOI Crossref
Rituximab&nbsp;capping&nbsp;triggers intracellular reorganization of B cells
Koller T, Blok S, Santos AM, ..., Sezgin E, Eggeling C
Matters - (-) - [2017-01-12; online 2017-01-12]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics.
Janouškovec J, Gavelis GS, Burki F, ..., Rohwer FL, Saldarriaga JF
Proc. Natl. Acad. Sci. U.S.A. 114 (2) E171-E180 [2017-01-10; online 2016-12-27]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Sex differences in depression during pregnancy and the postpartum period.
Sundström Poromaa I, Comasco E, Georgakis MK, Skalkidou A
J Neurosci Res 95 (1-2) 719-730 [2017-01-02; online 2016-11-22]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Associations between a polymorphism in the hydroxysteroid (11-beta) dehydrogenase 1 gene, neuroticism and postpartum depression.
Iliadis SI, Comasco E, Hellgren C, ..., Sundström Poromaa I, Skalkidou A
J Affect Disord 207 (-) 141-147 [2017-01-01; online 2016-09-26]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Modulation of the molecular arrangement in artificial and biological membranes by phospholipid-shelled microbubbles.
Carugo D, Aron M, Sezgin E, ..., Eggeling C, Stride E
Biomaterials 113 (-) 105-117 [2017-01-00; online 2016-10-24]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Mitochondria-related transcriptional signature is downregulated in adipocytes in obesity: a study of young healthy MZ twins.
Heinonen S, Muniandy M, Buzkova J, ..., Rissanen A, Pietiläinen KH
Diabetologia 60 (1) 169-181 [2017-01-00; online 2016-10-12]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
DOI Crossref
The Convoluted Evolution of Eukaryotes With Complex Plastids
Burki F
- - (-) 1-30 [2017-00-00; online 2017-00-00]
Affiliated researcher Fabien Burki SciLifeLab Fellow
DOI Crossref
Structure-Based Discovery of GPCR Ligands from Crystal Structures and Homology Models
Ranganathan A, Rodríguez D, Carlsson J
- - (-) 65-99 [2017-00-00; online 2017-05-25]
Jens Carlsson SciLifeLab Fellow
DOI Crossref
Long Non Coding RNA Biology
Springer [book] (-) - [2017-00-00; online 2017-00-00]
SciLifeLab Fellow Vicent Pelechano
DOI Crossref
Evolution of Resistance to Insecticide in Disease Vectors
Labbé P, David JP, Alout H, ..., Pasteur N, Weill M
- - (-) 313-339 [2017-00-00; online 2017-00-00]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
Bridging chemical- and bio-catalysis: high-value liquid transportation fuel production from renewable agricultural residues
Xue C, Liu M, Guo X, ..., Liu F, Yang ST
Green Chem. 19 (3) 660-669 [2017-00-00; online 2017-00-00]
Paul Hudson SciLifeLab Fellow

Year 2016

PubMed DOI Crossref
The Chd1 chromatin remodeler shifts hexasomes unidirectionally.
Levendosky RF, Sabantsev A, Deindl S, Bowman GD
Elife 5 (-) - [2016-12-29; online 2016-12-29]
Affiliated researcher SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
On the role of water density fluctuations in the inhibition of a proton channel.
Gianti E, Delemotte L, Klein ML, Carnevale V
Proc. Natl. Acad. Sci. U.S.A. 113 (52) E8359-E8368 [2016-12-27; online 2016-12-12]
Affiliated researcher Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Pickering and Network Stabilization of Biocompatible Emulsions Using Chitosan-Modified Silica Nanoparticles.
Alison L, Rühs PA, Tervoort E, ..., Isa L, Studart AR
Langmuir 32 (50) 13446-13457 [2016-12-20; online 2016-12-09]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
The ace-1 Locus Is Amplified in All Resistant Anopheles gambiae Mosquitoes: Fitness Consequences of Homogeneous and Heterogeneous Duplications.
Assogba BS, Milesi P, Djogbénou LS, ..., Labbé P, Weill M
PLoS Biol. 14 (12) e2000618 [2016-12-00; online 2016-12-05]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Computational metabolic engineering strategies for growth-coupled biofuel production by Synechocystis.
Shabestary K, Hudson EP
Metabolic engineering communications 3 (-) 216-226 [2016-12-00; online 2016-07-20]
Paul Hudson SciLifeLab Fellow
PubMed DOI Crossref
ClpAP is an auxiliary protease for DnaA degradation in Caulobacter crescentus.
Liu J, Francis LI, Jonas K, Laub MT, Chien P
Mol. Microbiol. 102 (6) 1075-1085 [2016-12-00; online 2016-10-17]
Affiliated researcher Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Allochthonous carbon is a major regulator to bacterial growth and community composition in subarctic freshwaters
Roiha T, Peura S, Cusson M, Rautio M
Sci Rep 6 (1) - [2016-12-00; online 2016-09-30]
Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
A Kinase-Phosphatase Switch Transduces Environmental Information into a Bacterial Cell Cycle Circuit.
Heinrich K, Sobetzko P, Jonas K
PLoS Genet 12 (12) e1006522 [2016-12-00; online 2016-12-12]
Affiliated researcher Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Editorial: The Impact of Systems Medicine on Human Health and Disease.
Mardinoglu A, Nielsen J
Front. Physiol. 7 (-) 552 [2016-11-24; online 2016-11-24]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Successful transmission and transcriptional deployment of a human chromosome via mouse male meiosis.
Ernst C, Pike J, Aitken SJ, ..., Kutter C, Odom DT
Elife 5 (-) - [2016-11-18; online 2016-11-18]
Affiliated researcher Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus.
Casey JR, Mardinoglu A, Nielsen J, Karl DM
mSystems 1 (6) - [2016-11-15; online 2016-11-15]
Adil Mardinoglu Affiliated researcher SciLifeLab Fellow
PubMed DOI Crossref
Relating fitness to long-term environmental variations in natura.
Milesi P, Lenormand T, Lagneau C, Weill M, Labbé P
Mol. Ecol. 25 (21) 5483-5499 [2016-11-00; online 2016-10-14]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Rapid Restoration of Vascularity and Oxygenation in Mouse and Human Islets Transplanted to Omentum May Contribute to Their Superior Function Compared to Intraportally Transplanted Islets.
Espes D, Lau J, Quach M, ..., Christoffersson G, Carlsson PO
American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 16 (11) 3246-3254 [2016-11-00; online 2016-07-22]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
MID-PREGNANCY CORTICOTROPIN-RELEASING HORMONE LEVELS IN ASSOCIATION WITH POSTPARTUM DEPRESSIVE SYMPTOMS.
Iliadis SI, Sylvén S, Hellgren C, ..., Sundström Poromaa I, Skalkidou A
Depress Anxiety 33 (11) 1023-1030 [2016-11-00; online 2016-05-27]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Corrigendum to "Cardiovascular side-effects and insulin secretion after intravenous administration of radiolabeled Exendin-4 in pigs" [Nucl Med Biol 43 (2016) 397-402].
Rydén A, Nyman G, Nalin L, ..., Eriksson O, Jensen-Waern M
Nucl. Med. Biol. 43 (11) 742 [2016-11-00; online 2016-09-07]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
ARAP2 promotes GLUT1-mediated basal glucose uptake through regulation of sphingolipid metabolism.
Chaudhari A, Håversen L, Mobini R, ..., Perkins R, Borén J
Biochim. Biophys. Acta 1861 (11) 1643-1651 [2016-11-00; online 2016-07-27]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Structure-Based Screening of Uncharted Chemical Space for Atypical Adenosine Receptor Agonists.
Rodríguez D, Chakraborty S, Warnick E, ..., Jacobson KA, Carlsson J
ACS chemical biology 11 (10) 2763-2772 [2016-10-21; online 2016-08-22]
Affiliated researcher Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (1) 13182 [2016-10-14; online 2016-10-14]
Affiliated researcher Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Mülleder M, Calvani E, Alam MT, ..., Zelezniak A, Ralser M
Cell 167 (2) 553-565.e12 [2016-10-00; online 2016-10-00]
Aleksej Zelezniak SciLifeLab Fellow
PubMed DOI Crossref
Associations between the FKBP5 haplotype, exposure to violence and anxiety in females.
Isaksson J, Comasco E, Åslund C, ..., Andershed H, Nilsson KW
Psychoneuroendocrinology 72 (-) 196-204 [2016-10-00; online 2016-07-15]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
A global genetic interaction network maps a wiring diagram of cellular function.
Costanzo M, VanderSluis B, Koch EN, ..., Andrews B, Boone C
Science (New York, N.Y.) 353 (6306) aaf1420-aaf1420 [2016-09-23; online 2016-10-07]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
IL-15 activates mTOR and primes stress-activated gene expression leading to prolonged antitumor capacity of NK cells.
Mao Y, van Hoef V, Zhang X, ..., Kiessling R, Lundqvist A
Blood 128 (11) 1475-1489 [2016-09-15; online 2016-07-27]
Affiliated researcher SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Sequence variation between 462 human individuals fine-tunes functional sites of RNA processing.
Ferreira PG, Oti M, Barann M, ..., Guigó R, Sammeth M
Sci Rep 6 (1) 32406 [2016-09-12; online 2016-09-12]
Affiliated researcher Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
Regulation of myeloid cells by activated T cells determines the efficacy of PD-1 blockade.
Eissler N, Mao Y, Brodin D, ..., Kiessling R, Kogner P
Oncoimmunology 5 (12) e1232222 [2016-09-09; online 2016-09-09]
Affiliated researcher SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Use of BODIPY-Cholesterol (TF-Chol) for Visualizing Lysosomal Cholesterol Accumulation.
Hölttä-Vuori M, Sezgin E, Eggeling C, Ikonen E
Traffic 17 (9) 1054-1057 [2016-09-00; online 2016-06-13]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Principles for RNA metabolism and alternative transcription initiation within closely spaced promoters.
Chen Y, Pai AA, Herudek J, ..., Jensen TH, Sandelin A
Nat. Genet. 48 (9) 984-994 [2016-09-00; online 2016-07-25]
Affiliated researcher SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Positron Emission Tomography to Assess the Outcome of Intraportal Islet Transplantation.
Eriksson O, Selvaraju R, Eich T, ..., Lundgren T, Korsgren O
Diabetes 65 (9) 2482-2489 [2016-09-00; online 2016-06-20]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Pancreatic perfusion and subsequent response to glucose in healthy individuals and patients with type 1 diabetes.
Carlbom L, Espes D, Lubberink M, ..., Ahlström H, Carlsson PO
Diabetologia 59 (9) 1968-1972 [2016-09-00; online 2016-06-16]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Gender transition affects neural correlates of empathy: A resting state functional connectivity study with ultra high-field 7T MR imaging.
Spies M, Hahn A, Kranz GS, ..., Kasper S, Lanzenberger R
NeuroImage 138 (-) 257-265 [2016-09-00; online 2016-05-26]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont.
Hehenberger E, Burki F, Kolisko M, Keeling PJ
Mol. Biol. Evol. 33 (9) 2376-2390 [2016-09-00; online 2016-06-13]
Affiliated researcher Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
A Deeper Look into Type 1 Diabetes - Imaging Immune Responses during Onset of Disease.
Christoffersson G, von Herrath MG
Front Immunol 7 (-) 313 [2016-08-15; online 2016-08-15]
Gustaf Christoffersson SciLifeLab Fellow
DOI Crossref
Mixed cultures as model communities: hunting for ubiquitous microorganisms, their partners, and interactions
Garcia S
Aquat. Microb. Ecol. 77 (2) 79-85 [2016-08-12; online 2016-08-12]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection.
Dolowschiak T, Mueller AA, Pisan LJ, ..., Mueller C, Hardt WD
Cell Host Microbe 20 (2) 238-249 [2016-08-10; online 2016-07-21]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Photoswitchable Spiropyran Dyads for Biological Imaging.
Xiong Y, Rivera-Fuentes P, Sezgin E, ..., Eggeling C, Anderson HL
Org. Lett. 18 (15) 3666-3669 [2016-08-05; online 2016-07-26]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Skeletal response to diet with soya bean seeds used as primary source of protein in growing broiler chickens.
Olkowski B, Charuta A, Radzki R, Bieńko M, Toczko R
Journal of animal physiology and animal nutrition 100 (4) 731-737 [2016-08-00; online 2016-02-08]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae.
Hatorangan MR, Laenen B, Steige KA, Slotte T, Köhler C
Plant Cell 28 (8) 1815-1827 [2016-08-00; online 2016-07-27]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Quantification of β-Cell Mass in Intramuscular Islet Grafts Using Radiolabeled Exendin-4.
Espes D, Selvaraju R, Velikyan I, ..., Carlsson PO, Eriksson O
Transplantation direct 2 (8) e93 [2016-08-00; online 2016-07-22]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Liver: Phenotypic and genetic variance: a systems approach to the liver.
Mardinoglu A, Uhlén M
Nat Rev Gastroenterol Hepatol 13 (8) 439-440 [2016-08-00; online 2016-06-22]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Integrated Network Analysis Reveals an Association between Plasma Mannose Levels and Insulin Resistance.
Lee S, Zhang C, Kilicarslan M, ..., Boren J, Mardinoglu A
Cell Metab. 24 (1) 172-184 [2016-07-12; online 2016-06-23]
Adil Mardinoglu Affiliated researcher