Sanja Vickovic (17 publications)

Primary: Shown in the list of current labels.

Year 2025

PubMed DOI Crossref

Tissue and cellular spatiotemporal dynamics in colon aging

Daly AC, Cambuli F, Äijö T, ..., Regev A, Vickovic S

Nat Biotechnol - (-) - [2025-10-22; online 2025-10-22]

Sanja Vickovic SciLifeLab Fellow

Year 2024

PubMed DOI Crossref

SenNet recommendations for detecting senescent cells in different tissues.

Suryadevara V, Hudgins AD, Rajesh A, ..., Dou Z, Neretti N

Nat. Rev. Mol. Cell Biol. 25 (12) 1001-1023 [2024-12-00; online 2024-06-03]

Sanja Vickovic SciLifeLab Fellow

Year 2023

PubMed DOI Crossref

Spatial host-microbiome sequencing reveals niches in the mouse gut.

Lötstedt B, Stražar M, Xavier R, Regev A, Vickovic S

Nat. Biotechnol. - (-) - [2023-11-20; online 2023-11-20]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

In silico tissue generation and power analysis for spatial omics.

Baker EAG, Schapiro D, Dumitrascu B, Vickovic S, Regev A

Nat. Methods 20 (3) 424-431 [2023-03-00; online 2023-03-02]

Sanja Vickovic SciLifeLab Fellow

Year 2022

PubMed DOI Crossref

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium.

Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL

Commun Biol 5 (1) 129 [2022-02-11; online 2022-02-11]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

SM-Omics is an automated platform for high-throughput spatial multi-omics.

Vickovic S, Lötstedt B, Klughammer J, ..., Rozenblatt-Rosen O, Regev A

Nat Commun 13 (1) 795 [2022-02-10; online 2022-02-10]

Sanja Vickovic SciLifeLab Fellow

Year 2021

PubMed DOI Crossref

Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.

Biancalani T, Scalia G, Buffoni L, ..., Macosko EZ, Regev A

Nat. Methods 18 (11) 1352-1362 [2021-11-00; online 2021-10-28]

Sanja Vickovic SciLifeLab Fellow

Year 2019

PubMed DOI Crossref

High-definition spatial transcriptomics for in situ tissue profiling.

Vickovic S, Eraslan G, Salmén F, ..., Regev A, Ståhl PL

Nat. Methods 16 (10) 987-990 [2019-10-00; online 2019-09-09]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.

Smillie CS, Biton M, Ordovas-Montanes J, ..., Xavier RJ, Regev A

Cell 178 (3) 714-730.e22 [2019-07-25; online 2019-07-28]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis.

Maniatis S, Äijö T, Vickovic S, ..., Bonneau R, Phatnani H

Science (New York, N.Y.) 364 (6435) 89-93 [2019-04-05; online 2019-04-06]

Sanja Vickovic SciLifeLab Fellow

Year 2018

PubMed DOI Crossref

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.

Salmén F, Ståhl PL, Mollbrink A, ..., Frisén J, Lundeberg J

Nat Protoc 13 (11) 2501-2534 [2018-11-00; online 2018-10-26]

Sanja Vickovic SciLifeLab Fellow

DOI Crossref

Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors

Salmén F, Vickovic S, Larsson L, ..., Ståhl PL, Lundeberg J

- - (-) - [2018-06-29; online 2018-06-29]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.

Berglund E, Maaskola J, Schultz N, ..., Helleday T, Lundeberg J

Nat Commun 9 (1) 2419 [2018-06-20; online 2018-06-20]

Affiliated researcher Sanja Vickovic SciLifeLab Fellow

Year 2017

PubMed DOI Crossref

Spatial detection of fetal marker genes expressed at low level in adult human heart tissue.

Asp M, Salmén F, Ståhl PL, ..., Linde C, Lundeberg J

Sci Rep 7 (1) 12941 [2017-10-11; online 2017-10-11]

Affiliated researcher Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Spatially resolved transcriptome profiling in model plant species.

Giacomello S, Salmén F, Terebieniec BK, ..., Street NR, Lundeberg J

Nat Plants 3 (-) 17061 [2017-05-08; online 2017-05-08]

Affiliated researcher Sanja Vickovic SciLifeLab Fellow

Year 2016

PubMed DOI Crossref

Massive and parallel expression profiling using microarrayed single-cell sequencing.

Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J

Nat Commun 7 (1) 13182 [2016-10-14; online 2016-10-14]

Affiliated researcher Magda Bienko Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Ståhl PL, Salmén F, Vickovic S, ..., Lundeberg J, Frisén J

Science (New York, N.Y.) 353 (6294) 78-82 [2016-07-01; online 2016-07-02]

Affiliated researcher Sanja Vickovic SciLifeLab Fellow