Sanja Vickovic

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Primary: Shown in the list of current labels.

Year 2026

PubMed DOI Crossref
Tissue and cellular spatiotemporal dynamics in colon aging.
Daly AC, Cambuli F, Äijö T, ..., Regev A, Vickovic S
Nat. Biotechnol. 44 (8) 1340-1352 [2026-08-00; online 2025-10-22]
Sanja Vickovic SciLifeLab Fellow

Year 2025

PubMed DOI Crossref
From slices to deep dishes: spatial transcriptomics and translatomics of thick tissue blocks.
Pleška M, Vickovic S
Nat. Methods 22 (12) 2500-2502 [2025-12-00; online 2025-11-25]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Accelerating biomedical discoveries in brain health through transformative neuropathology of aging and neurodegeneration.
Murray ME, Smith C, Menon V, ..., Dugger BN, Phatnani H
Neuron 113 (22) 3703-3721 [2025-11-19; online 2025-07-18]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
INLAomics for Scalable and Interpretable Spatial Multiomic Data Integration.
Arnroth L, Vickovic S
bioRxiv - (-) - [2025-05-08; online 2025-05-08]
Sanja Vickovic SciLifeLab Fellow

Year 2024

PubMed DOI Crossref
SenNet recommendations for detecting senescent cells in different tissues.
Suryadevara V, Hudgins AD, Rajesh A, ..., Dou Z, Neretti N
Nat. Rev. Mol. Cell Biol. 25 (12) 1001-1023 [2024-12-00; online 2024-06-03]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Spatial host-microbiome sequencing reveals niches in the mouse gut.
Lötstedt B, Stražar M, Xavier R, Regev A, Vickovic S
Nat. Biotechnol. 42 (9) 1394-1403 [2024-09-00; online 2023-11-20]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Tissue and cellular spatiotemporal dynamics in colon aging.
Daly AC, Cambuli F, Äijö T, ..., Regev A, Vickovic S
bioRxiv - (-) - [2024-04-26; online 2024-04-26]
Sanja Vickovic SciLifeLab Fellow

Year 2023

PubMed DOI Crossref
In silico tissue generation and power analysis for spatial omics.
Baker EAG, Schapiro D, Dumitrascu B, Vickovic S, Regev A
Nat. Methods 20 (3) 424-431 [2023-03-00; online 2023-03-02]
Sanja Vickovic SciLifeLab Fellow

Year 2022

DOI Crossref
Spatial host-microbiome sequencing
Lötstedt B, Stražar M, Xavier R, Regev A, Vickovic S
- - (-) - [2022-07-19; online 2022-07-19]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium.
Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL
Commun Biol 5 (1) 129 [2022-02-11; online 2022-02-11]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
SM-Omics is an automated platform for high-throughput spatial multi-omics.
Vickovic S, Lötstedt B, Klughammer J, ..., Rozenblatt-Rosen O, Regev A
Nat Commun 13 (1) 795 [2022-02-10; online 2022-02-10]
Sanja Vickovic SciLifeLab Fellow

Year 2021

PubMed DOI Crossref
Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram.
Biancalani T, Scalia G, Buffoni L, ..., Macosko EZ, Regev A
Nat. Methods 18 (11) 1352-1362 [2021-11-00; online 2021-10-28]
Sanja Vickovic SciLifeLab Fellow

Year 2020

DOI Crossref
Three-dimensional spatial transcriptomics uncovers cell type dynamics in the rheumatoid arthritis synovium
Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL
- - (-) - [2020-12-11; online 2020-12-11]
Sanja Vickovic SciLifeLab Fellow
DOI Crossref
SM-Omics: An automated platform for high-throughput spatial multi-omics
Vickovic S, Lötstedt B, Klughammer J, ..., Rozenblatt-Rosen O, Regev A
- - (-) - [2020-10-15; online 2020-10-15]
Sanja Vickovic SciLifeLab Fellow

Year 2019

PubMed DOI Crossref
High-definition spatial transcriptomics for in situ tissue profiling.
Vickovic S, Eraslan G, Salmén F, ..., Regev A, Ståhl PL
Nat. Methods 16 (10) 987-990 [2019-10-00; online 2019-09-09]
Sanja Vickovic SciLifeLab Fellow
DOI Crossref
Splotch: Robust estimation of aligned spatial temporal gene expression data
Äijö T, Maniatis S, Vickovic S, ..., Lundeberg J, Bonneau R
- - (-) - [2019-09-05; online 2019-09-05]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Smillie CS, Biton M, Ordovas-Montanes J, ..., Xavier RJ, Regev A
Cell 178 (3) 714-730.e22 [2019-07-25; online 2019-07-28]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis.
Maniatis S, Äijö T, Vickovic S, ..., Bonneau R, Phatnani H
Science (New York, N.Y.) 364 (6435) 89-93 [2019-04-05; online 2019-04-06]
Sanja Vickovic SciLifeLab Fellow
DOI Crossref
High-density spatial transcriptomics arrays for in situ tissue profiling
Vickovic S, Eraslan G, Klughammer J, ..., Regev A, Ståhl PL
- - (-) - [2019-02-28; online 2019-02-28]
Sanja Vickovic SciLifeLab Fellow

Year 2018

PubMed DOI Crossref
Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.
Salmén F, Ståhl PL, Mollbrink A, ..., Frisén J, Lundeberg J
Nat Protoc 13 (11) 2501-2534 [2018-11-00; online 2018-10-26]
Sanja Vickovic SciLifeLab Fellow
DOI Crossref
Spatiotemporal Dynamics of Molecular Pathology in Amyotrophic Lateral Sclerosis
Maniatis S, Äijö T, Vickovic S, ..., Bonneau R, Phatnani H
bioRxiv - (-) - [2018-08-09; online 2018-08-09]
Sanja Vickovic SciLifeLab Fellow
DOI Crossref
Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors
Salmén F, Vickovic S, Larsson L, ..., Ståhl PL, Lundeberg J
- - (-) - [2018-06-29; online 2018-06-29]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.
Berglund E, Maaskola J, Schultz N, ..., Helleday T, Lundeberg J
Nat Commun 9 (1) 2419 [2018-06-20; online 2018-06-20]
Affiliated researcher Sanja Vickovic SciLifeLab Fellow

Year 2017

PubMed DOI Crossref
Spatial detection of fetal marker genes expressed at low level in adult human heart tissue.
Asp M, Salmén F, Ståhl PL, ..., Linde C, Lundeberg J
Sci Rep 7 (1) 12941 [2017-10-11; online 2017-10-11]
Affiliated researcher Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Spatially resolved transcriptome profiling in model plant species.
Giacomello S, Salmén F, Terebieniec BK, ..., Street NR, Lundeberg J
Nat Plants 3 (-) 17061 [2017-05-08; online 2017-05-08]
Affiliated researcher Sanja Vickovic SciLifeLab Fellow
DOI Crossref
05.16 Transcriptome visualisation of the inflamed rheumatoid arthritis joint
Carlberg K, Vickovic S, Ståhl PL, ..., Malmström V, Lundeberg J
Ann Rheum Dis 76 (-) A58-A59 [2017-03-00; online 2017-03-00]
Sanja Vickovic SciLifeLab Fellow

Year 2016

PubMed DOI Crossref
Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (1) 13182 [2016-10-14; online 2016-10-14]
Affiliated researcher Magda Bienko Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Ståhl PL, Salmén F, Vickovic S, ..., Lundeberg J, Frisén J
Science (New York, N.Y.) 353 (6294) 78-82 [2016-07-01; online 2016-07-02]
Affiliated researcher Sanja Vickovic SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1