Andersson AF

Microbial model communities exhibit widespread metabolic interdependencies.

Pacheco-Valenciana A, Tausch A, Veseli I, ..., Andersson AF, Garcia SL

Commun Biol 8 (1) 1752 [2025-12-03; online 2025-12-03]

HAPP: High-accuracy pipeline for processing deep metabarcoding data.

Sundh J, Granqvist E, Iwaszkiewicz-Eggebrecht E, ..., Andersson AF, Ronquist F

PLoS Comput Biol 21 (11) e1013558 [2025-11-00; online 2025-11-07]

Comparing the performance of functional versus taxonomic metagenomics for detecting ammonia disturbances in the biogas system

Boers D, Chapleur O, Andersson AF, Schnürer A

- - (-) - [2025-06-10; online 2025-06-10]

Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar.

Miraldo A, Sundh J, Iwaszkiewicz-Eggebrecht E, ..., Roslin T, Ronquist F

Sci Data 12 (1) 835 [2025-05-21; online 2025-05-21]

Low anabolic independence emerges when cultivating more than three bacterial species together

Pacheco-Valenciana A, Tausch A, Veseli I, ..., Andersson AF, Garcia SL

- - (-) - [2025-04-28; online 2025-04-28]

HAPP: High-Accuracy Pipeline for Processing deep metabarcoding data

Sundh J, Granqvist E, Iwaszkiewicz-Eggebrecht E, ..., Andersson AF, Ronquist F

- - (-) - [2024-12-22; online 2024-12-22]

Data of the Insect Biome Atlas: a metabarcoding survey of the terrestrial arthropods of Sweden and Madagascar

Miraldo A, Sundh J, Iwaszkiewicz-Eggebrecht E, ..., Roslin T, Ronquist F

- - (-) - [2024-10-28; online 2024-10-28]

Temperature, sediment resuspension, and salinity drive the prevalence of Vibrio vulnificus in the coastal Baltic Sea.

Fernández-Juárez V, Riedinger DJ, Gusmao JB, ..., Labrenz M, Riemann L

MBio 15 (10) e0156924 [2024-10-16; online 2024-09-19]

Distinct bacterial and protist plankton diversity dynamics uncovered through DNA-based monitoring in the Baltic Sea area

Jurdzinski KT, Latz MA, Torstensson A, ..., Karlson B, Andersson AF

- - (-) - [2024-08-14; online 2024-08-14]

A comprehensive dataset on spatiotemporal variation of microbial plankton communities in the Baltic Sea.

Latz MAC, Andersson A, Brugel S, ..., Torstensson A, Andersson AF

Sci Data 11 (1) 18 [2024-01-02; online 2024-01-02]

New chemical and microbial perspectives on vitamin B1 and vitamer dynamics of a coastal system.

Bittner MJ, Bannon CC, Rowland E, ..., Paerl RW, Riemann L

ISME Commun 4 (1) ycad016 [2024-01-00; online 2024-01-10]

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity.

Jurdzinski KT, Mehrshad M, Delgado LF, ..., Bertilsson S, Andersson AF

Sci Adv 9 (21) eadg2059 [2023-05-26; online 2023-05-26]

Towards high-throughput parallel imaging and single-cell transcriptomics of microbial eukaryotic plankton

Grujcic V, Saarenpää S, Sundh J, ..., Foster RA, Andersson AF

- - (-) - [2023-03-29; online 2023-03-29]

Linking prokaryotic genome size variation to metabolic potential and environment.

Rodríguez-Gijón A, Buck M, Andersson AF, ..., Nascimento FJA, Garcia SL

ISME Commun 3 (1) 25 [2023-03-27; online 2023-03-27]

ASV portal: an interface to DNA-based biodiversity data in the Living Atlas.

Prager M, Lundin D, Ronquist F, Andersson AF

BMC Bioinformatics 24 (1) 6 [2023-01-05; online 2023-01-05]

Linking prokaryotic genome size variation to metabolic potential and environment

Rodríguez-Gijón A, Buck M, Andersson AF, ..., Nascimento FJA, Garcia SL

- - (-) - [2022-10-21; online 2022-10-21]

Large-scale phylogenomics of aquatic bacteria reveal molecular mechanisms for adaptation to salinity

Jurdzinski KT, Mehrshad M, Delgado LF, ..., Bertilsson S, Andersson AF

- - (-) - [2022-10-03; online 2022-10-03]

Introducing guidelines for publishing DNA-derived occurrence data through biodiversity data platforms

Nilsson RH, Andersson AF, Bissett A, ..., Svenningsen CS, Schigel D

MBMG 6 (-) - [2022-08-02; online 2022-08-02]

Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing.

Latz MAC, Grujcic V, Brugel S, ..., Andersson A, Andersson AF

Mol Ecol Resour 22 (6) 2304-2318 [2022-08-00; online 2022-05-06]

Optimizing insect metabarcoding using replicated mock communities

Iwaszkiewicz-Eggebrecht E, Granqvist E, Buczek M, ..., Ronquist F, Łukasik P

- - (-) - [2022-06-22; online 2022-06-22]

Evaluating metagenomic assembly approaches for biome-specific gene catalogues.

Delgado LF, Andersson AF

Microbiome 10 (1) 72 [2022-05-06; online 2022-05-06]

Evaluating metagenomic assembly approaches for biome-specific gene catalogues

Delgado LF, Andersson AF

- - (-) - [2021-10-02; online 2021-10-02]

Ecologically coherent population structure of uncultivated bacterioplankton.

Sjöqvist C, Delgado LF, Alneberg J, Andersson AF

ISME J 15 (10) 3034-3049 [2021-10-00; online 2021-05-05]

The Fennoscandian Shield deep terrestrial virosphere suggests slow motion 'boom and burst' cycles.

Holmfeldt K, Nilsson E, Simone D, ..., Bertilsson S, Dopson M

Commun Biol 4 (1) 307 [2021-03-08; online 2021-03-08]

The environment drives microbial trait variability in aquatic habitats.

Beier S, Andersson AF, Galand PE, ..., McMahon K, Bertilsson S

Mol. Ecol. 29 (23) 4605-4617 [2020-12-00; online 2020-10-18]

Genome sequence of segmented filamentous bacteria present in the human intestine.

Jonsson H, Hugerth LW, Sundh J, Lundin E, Andersson AF

Commun Biol 3 (1) 485 [2020-09-04; online 2020-09-04]

Active sulfur cycling in the terrestrial deep subsurface.

Bell E, Lamminmäki T, Alneberg J, ..., Frutschi M, Bernier-Latmani R

ISME J 14 (5) 1260-1272 [2020-05-00; online 2020-02-11]

Revealing ecologically coherent population structure of uncultivated bacterioplankton with POGENOM

Sjöqvist C, Delgado Zambrano L, Alneberg J, Andersson A

- - (-) - [2020-03-26; online 2020-03-26]

Ecosystem-wide metagenomic binning enables prediction of ecological niches from genomes.

Alneberg J, Bennke C, Beier S, ..., Pinhassi J, Andersson AF

Commun Biol 3 (1) 119 [2020-03-13; online 2020-03-13]

Marine snow as a habitat for microbial mercury methylators in the Baltic Sea

Capo E, Bravo AG, Soerensen AL, ..., Buck M, Björn E

- - (-) - [2020-03-05; online 2020-03-05]

Genome Sequence of Segmented Filamentous Bacteria Present in the Human Intestine

Jonsson H, Hugerth LW, Sundh J, Andersson AF

- - (-) - [2019-10-21; online 2019-10-21]

Birth mode is associated with earliest strain-conferred gut microbiome functions and immunostimulatory potential.

Wampach L, Heintz-Buschart A, Fritz JV, ..., de Beaufort C, Wilmes P

Nat Commun 9 (1) 5091 [2018-11-30; online 2018-11-30]

Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems.

Hu YOO, Ndegwa N, Alneberg J, ..., Fagerberg J, Andersson AF

Sci Rep 8 (1) 11907 [2018-08-09; online 2018-08-09]

BARM and BalticMicrobeDB, a reference metagenome and interface to meta-omic data for the Baltic Sea.

Alneberg J, Sundh J, Bennke C, ..., Labrenz M, Andersson AF

Sci Data 5 (-) 180146 [2018-07-31; online 2018-07-31]

Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

Alneberg J, Karlsson CMG, Divne AM, ..., Andersson AF, Pinhassi J

bioRxiv - (-) - [2017-11-14; online 2017-11-14]

Ninety-nine de novo assembled genomes from the moose (Alces alces) rumen microbiome provide new insights into microbial plant biomass degradation.

Svartström O, Alneberg J, Terrapon N, ..., Aspeborg H, Andersson AF

ISME J 11 (11) 2538-2551 [2017-11-00; online 2017-07-21]

Mineral Type Structures Soil Microbial Communities

Ahmed E, Hugerth LW, Logue JB, ..., Andersson AF, Holmström SJM

Geomicrobiology Journal 34 (6) 538-545 [2017-07-03; online 2016-11-22]

Affiliated researcher DDLS Fellow Luisa Hugerth