Genome Res

ISSN	1549-5469
ISSN-L	1088-9051
IUID	0c33b46dd2904312b858c44a93fe050b
Modified	2020-11-27T13:12:55.474Z
Created	2020-11-08T15:49:22.734Z

Year 2025

PubMed DOI Crossref

Recalibrating differential gene expression by genetic dosage variance prioritizes functionally relevant genes.

Rentzsch P, Kollotzek A, Ganapathy KR, Mohammadi P, Lappalainen T

Genome Res 35 (10) 2316-2325 [2025-10-01; online 2025-10-01]

PubMed DOI Crossref

Wnt signaling activation induces CTCF binding and loop formation at cis-regulatory elements of target genes.

Nordin A, Chakraborty C, Jonasson M, ..., Remeseiro S, Cantù C

Genome Res 35 (8) 1701-1716 [2025-08-01; online 2025-08-01]

PubMed DOI Crossref

Analysis of canine gene constraint identifies new variants for orofacial clefts and stature.

Buckley RM, Bilgen N, Harris AC, ..., Boyko AR, Ostrander EA

Genome Res 35 (5) 1080-1093 [2025-05-02; online 2025-05-02]

Year 2023

PubMed DOI Crossref

Historical RNA expression profiles from the extinct Tasmanian tiger.

Mármol-Sánchez E, Fromm B, Oskolkov N, ..., Dalén L, Friedländer MR

Genome Res 33 (8) 1299-1316 [2023-08-00; online 2023-07-18]

Marc Friedländer SciLifeLab Fellow

PubMed DOI Crossref

Efficient mapping of accurate long reads in minimizer space with mapquik.

Ekim B, Sahlin K, Medvedev P, Berger B, Chikhi R

Genome Res 33 (7) 1188-1197 [2023-07-00; online 2023-06-30]

Kristoffer Sahlin SciLifeLab Fellow

PubMed DOI Crossref

Entropy predicts sensitivity of pseudorandom seeds.

Maier BD, Sahlin K

Genome Res 33 (7) 1162-1174 [2023-07-00; online 2023-05-22] Open Access

Kristoffer Sahlin SciLifeLab Fellow

Year 2022

PubMed DOI Crossref

Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells.

Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C

Genome Res 32 (10) 1876-1891 [2022-10-00; online 2022-09-30]

Claudia Kutter SciLifeLab Fellow

PubMed DOI Crossref

Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples.

Zhang H, Polavarapu VK, Xing P, ..., Sjöblom T, Chen X

Genome Res 32 (1) 150-161 [2022-01-00; online 2021-07-14]

PubMed DOI Crossref

Cell type-specific analysis by single-cell profiling identifies a stable mammalian tRNA-mRNA interface and increased translation efficiency in neurons.

Gao W, Gallardo-Dodd CJ, Kutter C

Genome Res 32 (1) 97-110 [2022-01-00; online 2021-12-02]

Claudia Kutter SciLifeLab Fellow

Year 2019

PubMed DOI Crossref

Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast.

Wei W, Hennig BP, Wang J, ..., Steinmetz LM, Pelechano V

Genome Res 29 (12) 1974-1984 [2019-12-00; online 2019-11-18]

SciLifeLab Fellow Vicent Pelechano

PubMed DOI Crossref

A quantitative framework for characterizing the evolutionary history of mammalian gene expression.

Chen J, Swofford R, Johnson J, ..., Palma FD, Regev A

Genome Res 29 (1) 53-63 [2019-01-00; online 2018-12-14]

Year 2015

PubMed DOI Crossref

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.

Burri R, Nater A, Kawakami T, ..., Török J, Ellegren H

Genome Res 25 (11) 1656-1665 [2015-11-00; online 2015-09-09]

PubMed DOI Crossref

Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background.

Elvers I, Turner-Maier J, Swofford R, ..., Lindblad-Toh K, Alföldi J

Genome Res 25 (11) 1634-1645 [2015-11-00; online 2015-09-16]

PubMed DOI Crossref

Signatures of post-zygotic structural genetic aberrations in the cells of histologically normal breast tissue that can predispose to sporadic breast cancer.

Forsberg LA, Rasi C, Pekar G, ..., Tot T, Dumanski JP

Genome Res 25 (10) 1521-1535 [2015-10-00; online 2015-10-03]

PubMed DOI Crossref

High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9.

Varshney GK, Pei W, LaFave MC, ..., Ledin J, Burgess SM

Genome Res 25 (7) 1030-1042 [2015-07-00; online 2015-06-05]

Year 2013

PubMed DOI Crossref

Comparative genomics as a tool to understand evolution and disease.

Alföldi J, Lindblad-Toh K

Genome Res 23 (7) 1063-1068 [2013-07-00; online 2013-07-03]

Year 2012

PubMed DOI Crossref

A-to-I editing of microRNAs in the mammalian brain increases during development.

Ekdahl Y, Farahani HS, Behm M, Lagergren J, Öhman M

Genome Res 22 (8) 1477-1487 [2012-08-00; online 2012-05-29]

PubMed DOI Crossref

Death of PRDM9 coincides with stabilization of the recombination landscape in the dog genome.

Axelsson E, Webster MT, Ratnakumar A, ..., Ponting CP, Lindblad-Toh K

Genome Res 22 (1) 51-63 [2012-01-00; online 2011-10-17]

Year 2011

PubMed DOI Crossref

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.

Song L, Zhang Z, Grasfeder LL, ..., Lieb JD, Furey TS

Genome Res 21 (10) 1757-1767 [2011-10-00; online 2011-07-12]