Nat Protoc

ISSN	1754-2189
ISSN-L	1750-2799
IUID	fdc3977b4edc499bbd90d4abb5bff3ad
Modified	2020-11-27T13:12:56.884Z
Created	2018-12-03T14:34:37.554Z

Year 2024

PubMed DOI Crossref

Multiplexed chromatin immunoprecipitation sequencing for quantitative study of histone modifications and chromatin factors.

Kumar B, Navarro C, Yung PYK, ..., Martin M, Elsässer SJ

Nat Protoc - (-) - [2024-10-03; online 2024-10-03]

SciLifeLab Fellow Simon Elsässer

Year 2022

PubMed DOI Crossref

Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment.

Pomerantz A, Sahlin K, Vasiljevic N, ..., Ogden R, Prost S

Nat Protoc 17 (6) 1415-1443 [2022-06-00; online 2022-04-11]

Kristoffer Sahlin SciLifeLab Fellow

Year 2021

PubMed DOI Crossref

A practical guide to large-scale docking.

Bender BJ, Gahbauer S, Luttens A, ..., Irwin JJ, Shoichet BK

Nat Protoc 16 (10) 4799-4832 [2021-10-00; online 2021-09-24]

Jens Carlsson SciLifeLab Fellow

PubMed DOI Crossref

Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of microbial cells with specific functions.

Lee KS, Pereira FC, Palatinszky M, ..., Wagner M, Stocker R

Nat Protoc 16 (2) 634-676 [2021-02-00; online 2020-12-11]

Lars Behrendt SciLifeLab Fellow

Year 2020

PubMed DOI Crossref

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.

Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N

Nat Protoc 15 (12) 3894-3941 [2020-12-00; online 2020-11-02]

Magda Bienko SciLifeLab Fellow

Year 2019

PubMed DOI Crossref

Measuring nanoscale diffusion dynamics in cellular membranes with super-resolution STED-FCS.

Sezgin E, Schneider F, Galiani S, ..., Lagerholm BC, Eggeling C

Nat Protoc 14 (4) 1054-1083 [2019-04-00; online 2019-03-06]

Erdinc Sezgin SciLifeLab Fellow

Year 2018

PubMed DOI Crossref

Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.

Salmén F, Ståhl PL, Mollbrink A, ..., Frisén J, Lundeberg J

Nat Protoc 13 (11) 2501-2534 [2018-11-00; online 2018-10-26]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Preparation of asymmetric phospholipid vesicles for use as cell membrane models.

Doktorova M, Heberle FA, Eicher B, ..., Pabst G, Marquardt D

Nat Protoc 13 (9) 2086-2101 [2018-09-00; online 2018-09-08]

DDLS Fellow Milka Doktorova

Year 2017

PubMed DOI Crossref

A human intestinal M-cell-like model for investigating particle, antigen and microorganism translocation.

Beloqui A, Brayden DJ, Artursson P, Préat V, des Rieux A

Nat Protoc 12 (7) 1387-1399 [2017-07-00; online 2017-06-15]

Affiliated researcher

Year 2016

PubMed DOI Crossref

A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish.

Varshney GK, Carrington B, Pei W, ..., Sood R, Burgess SM

Nat Protoc 11 (12) 2357-2375 [2016-12-00; online 2016-10-27]

Affiliated researcher

PubMed DOI Crossref

Genome-wide quantification of 5'-phosphorylated mRNA degradation intermediates for analysis of ribosome dynamics.

Pelechano V, Wei W, Steinmetz LM

Nat Protoc 11 (2) 359-376 [2016-02-00; online 2016-01-28]

SciLifeLab Fellow Vicent Pelechano

Year 2014

PubMed DOI Crossref

The cellular thermal shift assay for evaluating drug target interactions in cells.

Jafari R, Almqvist H, Axelsson H, ..., Nordlund P, Martinez Molina D

Nat Protoc 9 (9) 2100-2122 [2014-09-00; online 2014-08-07]

Affiliated researcher

PubMed DOI Crossref

Genome-wide identification of transcript start and end sites by transcript isoform sequencing

Pelechano V, Wei W, Jakob P, Steinmetz LM

Nat Protoc 9 (7) 1740-1759 [2014-07-00; online 2014-06-26]

SciLifeLab Fellow Vicent Pelechano

PubMed DOI Crossref

Quality control and conduct of genome-wide association meta-analyses.

Winkler TW, Day FR, Croteau-Chonka DC, ..., Loos RJ, Genetic Investigation of Anthropometric Traits (GIANT) Consortium

Nat Protoc 9 (5) 1192-1212 [2014-05-00; online 2014-04-24]

Affiliated researcher

Year 2013

PubMed DOI Crossref

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.

Haas BJ, Papanicolaou A, Yassour M, ..., Friedman N, Regev A

Nat Protoc 8 (8) 1494-1512 [2013-08-00; online 2013-07-11]

Affiliated researcher

PubMed DOI Crossref

Solid-phase proximity ligation assays for individual or parallel protein analyses with readout via real-time PCR or sequencing.

Nong RY, Wu D, Yan J, ..., Landegren U, Darmanis S

Nat Protoc 8 (6) 1234-1248 [2013-06-00; online 2013-05-30]

Affiliated researcher

PubMed DOI Crossref

In situ detection of individual mRNA molecules and protein complexes or post-translational modifications using padlock probes combined with the in situ proximity ligation assay.

Weibrecht I, Lundin E, Kiflemariam S, ..., Nilsson M, Söderberg O

Nat Protoc 8 (2) 355-372 [2013-02-00; online 2013-01-24]

Affiliated researcher

Year 2012

PubMed DOI Crossref

Elucidating membrane structure and protein behavior using giant plasma membrane vesicles.

Sezgin E, Kaiser HJ, Baumgart T, ..., Simons K, Levental I

Nat Protoc 7 (6) 1042-1051 [2012-05-03; online 2012-05-03]

Erdinc Sezgin SciLifeLab Fellow

Year 2011

PubMed DOI Crossref

Titration-free 454 sequencing using Y adapters.

Zheng Z, Advani A, Melefors Ö, ..., Engstrand L, Andersson AF

Nat Protoc 6 (9) 1367-1376 [2011-08-18; online 2011-08-18]

Affiliated researcher