Saeed Shoaie (25 publications)

SciLifeLab Fellow since 2020.

Primary: Shown in the list of current labels.

Year 2022

Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt

Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D

- - (-) - [2022-11-01; online 2022-11-01]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Integrative functional analysis uncovers metabolic differences between Candida species.

Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S

Commun Biol 5 (1) 1013 [2022-09-26; online 2022-09-26]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Host-mycobiome metabolic interactions in health and disease.

Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S

Gut Microbes 14 (1) 2121576 [2022-09-25; online 2022-09-25]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders.

Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S

iScience 25 (7) 104513 [2022-07-15; online 2022-06-02]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions.

Ghaffari P, Shoaie S, Nielsen LK

J Transl Med 20 (1) 173 [2022-04-11; online 2022-04-11]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach.

Li X, Shong K, Kim W, ..., Zhang C, Mardinoglu A

EBioMedicine 78 (-) 103963 [2022-04-00; online 2022-03-25]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

A Gene Co-Expression Network-Based Drug Repositioning Approach Identifies Candidates for Treatment of Hepatocellular Carcinoma.

Yuan M, Shong K, Li X, ..., Zhang C, Mardinoglu A

Cancers (Basel) 14 (6) - [2022-03-19; online 2022-03-19]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial.

Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL

J Hepatol 76 (2) 332-342 [2022-02-00; online 2021-09-24]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Role of Cellular Metabolism during Candida-Host Interactions.

Pellon A, Begum N, Sadeghi Nasab SD, ..., Shoaie S, Moyes DL

Pathogens 11 (2) - [2022-01-28; online 2022-01-28]

Saeed Shoaie SciLifeLab Fellow

Year 2021

DOI Crossref

Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme

Kaynar A, Altay O, Li X, ..., Shoaie S, Mardinoglu A

Int J Mol Sci 22 (24) 13213 [2021-12-08; online 2021-12-08]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Revealing the Molecular Mechanisms of Alzheimer’s Disease Based on Network Analysis

Bayraktar A, Lam S, Altay O, ..., Shoaie S, Mardinoglu A

Int J Mol Sci 22 (21) 11556 [2021-10-26; online 2021-10-26]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients

Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A

Mol Syst Biol 17 (10) - [2021-10-00; online 2021-10-25]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies.

Ezzamouri B, Shoaie S, Ledesma-Amaro R

Front Microbiol 12 (-) 681982 [2021-08-31; online 2021-08-31]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Advances in the Relationships Between Cow's Milk Protein Allergy and Gut Microbiota in Infants.

Yang Y, Li X, Yang Y, ..., Ji B, Wei Y

Front Microbiol 12 (-) 716667 [2021-08-16; online 2021-08-16]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

Kang D, Shoaie S, Jacquiod S, Sørensen SJ, Ledesma-Amaro R

Microorganisms 9 (5) 1042 [2021-05-12; online 2021-05-12]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease

Rosario D, Bidkhori G, Lee S, ..., Mardinoglu A, Shoaie S

Cell Reports 34 (9) 108807 [2021-03-00; online 2021-03-00]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia

Harzandi A, Lee S, Bidkhori G, ..., Shoaie S, Sharpe CC

iScience 24 (2) 102046 [2021-02-00; online 2021-02-00]

Saeed Shoaie SciLifeLab Fellow

Year 2020

PubMed DOI Crossref

Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.

Vaga S, Lee S, Ji B, ..., Engstrand L, Shoaie S

Sci Rep 10 (1) 14977 [2020-09-11; online 2020-09-11]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions.

Proffitt C, Bidkhori G, Moyes D, Shoaie S

Microorganisms 8 (9) 1381 [2020-09-09; online 2020-09-09]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome.

Son JW, Shoaie S, Lee S

Endocrinol Metab (Seoul) 35 (3) 507-514 [2020-09-00; online 2020-09-22]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases.

Rosario D, Boren J, Uhlen M, ..., Mardinoglu A, Shoaie S

Front Neurosci 14 (-) 716 [2020-07-08; online 2020-07-08]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

A systems biology approach for studying neurodegenerative diseases.

Lam S, Bayraktar A, Zhang C, ..., Uhlen M, Mardinoglu A

Drug Discov. Today 25 (7) 1146-1159 [2020-07-00; online 2020-05-19]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Integrating the "Immunome" in the Stratification of Myelodysplastic Syndromes and Future Clinical Trial Design.

Winter S, Shoaie S, Kordasti S, Platzbecker U

J Clin Oncol 38 (15) 1723-1735 [2020-05-20; online 2020-02-14]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

MEMOTE for standardized genome-scale metabolic model testing.

Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C

Nat. Biotechnol. 38 (3) 272-276 [2020-03-00; online 2020-03-04]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Abundance and diversity of resistomes differ between healthy human oral cavities and gut.

Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL

Nat Commun 11 (1) 693 [2020-02-04; online 2020-02-04]

Saeed Shoaie SciLifeLab Fellow