Saeed Shoaie

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SciLifeLab Fellow since 2020.

Primary: Shown in the list of current labels.

Year 2026

PubMed DOI Crossref
Microbial collagenase activity is linked to oral-gut translocation in advanced chronic liver disease.
Jin S, Cenier A, Wetzel D, ..., Patel VC, Schirmer M
Nat. Microbiol 11 (1) 211-227 [2026-01-00; online 2025-12-29]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

Year 2025

DOI Crossref
POSTER: AML-570 Predictive Value of Microbiome and Metabolomic Biomarkers in Myeloid Neoplasms
Campagna A, Clasen F, Garcia-Guevara F, ..., Porta MGD, Shoaie S
Clinical Lymphoma Myeloma and Leukemia 25 (-) S190 [2025-09-00; online 2025-09-00]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Extensively acquired antimicrobial-resistant bacteria restructure the individual microbial community in post-antibiotic conditions.
Baek JW, Lim S, Park N, ..., Koh A, Lee S
NPJ Biofilms Microbiomes 11 (1) 78 [2025-05-14; online 2025-05-14]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Oral-gut microbiome interactions in advanced cirrhosis: characterisation of pathogenic enterotypes and salivatypes, virulence factors and antimicrobial resistance.
Lee S, Arefaine B, Begum N, ..., Shoaie S, Patel VC
J Hepatol 82 (4) 622-633 [2025-04-00; online 2024-10-22]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Enhanced Computational and Experimental Approaches for Comparative Analysis of the Human Mycobiome
Begum N, Lee S, Almeida M, ..., Shoiae S, Moyes DL
- - (-) - [2025-02-09; online 2025-02-09]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Multi-omics characterization of improved cognitive functions in Parkinson's disease patients after the combined metabolic activator treatment: a randomized, double-blinded, placebo-controlled phase II trial.
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
Brain Commun 7 (1) fcae478 [2025-01-06; online 2025-01-06]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Multi-Omics Analysis Reveals Key Factors Associated with the Parkinson's Disease Severity
Mardinoglu A, Jin H, Meng L, ..., Zhang C, Uhlen M
- - (-) - [2025-00-00; online 2025-00-00]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

Year 2024

DOI Crossref
Clinical Relevance of the Integrative Analysis of Gut Microbiome and Metabolomics in Myeloid Neoplasms: Correlations with Genomic Profiles, Treatment Response/Complications and Clinical Outcome
Campagna A, Clasen F, Portlock T, ..., Della Porta MG, Shoaie S
Blood 144 (Supplement 1) 104-104 [2024-11-05; online 2024-11-05]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Multi-omics analysis reveals the key factors involved in the severity of the Alzheimer's disease.
Meng L, Jin H, Yulug B, ..., Uhlén M, Mardinoglu A
Alzheimers Res Ther 16 (1) 213 [2024-10-02; online 2024-10-02]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Unveiling the Molecular Mechanisms of Glioblastoma through an Integrated Network-Based Approach.
Kaynar A, Kim W, Ceyhan AB, ..., Shoaie S, Mardinoglu A
Biomedicines 12 (10) - [2024-10-01; online 2024-10-01]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Transient colonizing microbes promote gut dysbiosis and functional impairment.
Lee S, Meslier V, Bidkhori G, ..., Uhlen M, Shoaie S
NPJ Biofilms Microbiomes 10 (1) 80 [2024-09-08; online 2024-09-08]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Extensively acquired antimicrobial resistant bacteria restructure the individual microbial community in post-antibiotic conditions
Baek JW, Lim S, Park N, ..., Koh A, Lee S
- - (-) - [2024-08-07; online 2024-08-07]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Global compositional and functional states of the human gut microbiome in health and disease.
Lee S, Portlock T, Le Chatelier E, ..., Uhlen M, Shoaie S
Genome Res 34 (6) 967-978 [2024-07-23; online 2024-07-23]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Discovery of a Therapeutic Agent for Glioblastoma Using a Systems Biology-Based Drug Repositioning Approach.
Kaynar A, Ozcan M, Li X, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 25 (14) - [2024-07-18; online 2024-07-18]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Retraction notice to "Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases" [Life Sci. 314 (2023) 121325].
Turkez H, Altay O, Yildirim S, ..., Uhlén M, Mardinoglu A
Life Sci 349 (-) 122712 [2024-07-15; online 2024-05-18]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined Metabolic Activators with Different NAD+ Precursors Improve Metabolic Functions in the Animal Models of Neurodegenerative Diseases.
Altay O, Yang H, Yildirim S, ..., Turkez H, Mardinoglu A
Biomedicines 12 (4) - [2024-04-22; online 2024-04-22]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Terlipressin therapy is associated with increased risk of colonisation with multidrug-resistant bacteria in patients with decompensated cirrhosis.
Mücke MM, Hernández-Tejero M, Gu W, ..., Trebicka J, MICROB-PREDICT and PREDICT Study Group of the EASL-CLIF Consortium
Aliment. Pharmacol. Ther. 59 (7) 877-888 [2024-04-00; online 2024-02-27]
Saeed Shoaie SciLifeLab Fellow

Year 2023

DOI Crossref
Gut Microbial Dysbiosis in Myeloid Neoplasms: Correlations with Clinical and Genomic Features
Portlock T, Campagna A, Viviani F, ..., Della Porta MG, Shoaie S
Blood 142 (Supplement 1) 3216-3216 [2023-11-02; online 2023-11-02]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Leveraging circulating microbial DNA for early cancer detection.
Kataria R, Shoaie S, Grigoriadis A, Wan JCM
Trends Cancer 9 (11) 879-882 [2023-11-00; online 2023-09-01]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Pathogenic entero- and salivatypes harbour changes in microbiome virulence and antimicrobial resistance genes with increasing chronic liver disease severity
Lee S, Arefaine B, Begum N, ..., Shoaie S, Patel VC
- - (-) - [2023-08-07; online 2023-08-07]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Drug repositioning targeting glutaminase reveals drug candidates for the treatment of Alzheimer's disease patients.
Bayraktar A, Li X, Kim W, ..., Shoaie S, Mardinoglu A
J Transl Med 21 (1) 332 [2023-05-20; online 2023-05-20]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Palidis: fast discovery of novel insertion sequences.
Carr VR, Pissis SP, Mullany P, ..., Gomez-Cabrero D, Moyes DL
Microb Genom 9 (3) - [2023-03-00; online 2023-03-11]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Systematic diet composition swap in a mouse genome-scale metabolic model reveals determinants of obesogenic diet metabolism in liver cancer.
Clasen F, Nunes PM, Bidkhori G, ..., Shoaie S, Anastasiou D
iScience 26 (2) 106040 [2023-02-17; online 2023-01-24]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined metabolic activators improve cognitive functions in Alzheimer's disease patients: a randomised, double-blinded, placebo-controlled phase-II trial.
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
Transl Neurodegener 12 (1) 4 [2023-01-26; online 2023-01-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Ellagic Acid and Its Metabolites as Potent and Selective Allosteric Inhibitors of Liver Pyruvate Kinase.
Battisti UM, Gao C, Akladios F, ..., Mardinoglu A, Grøtli M
Nutrients 15 (3) - [2023-01-22; online 2023-01-22]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment.
Ezzamouri B, Rosario D, Bidkhori G, ..., Uhlen M, Shoaie S
NPJ Syst Biol Appl 9 (1) 2 [2023-01-21; online 2023-01-21]
Saeed Shoaie SciLifeLab Fellow

Year 2022

DOI Crossref
Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt
Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D
- - (-) - [2022-11-01; online 2022-11-01]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integrative functional analysis uncovers metabolic differences between Candida species.
Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S
Commun Biol 5 (1) 1013 [2022-09-26; online 2022-09-26]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Host-mycobiome metabolic interactions in health and disease.
Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S
Gut Microbes 14 (1) 2121576 [2022-09-25; online 2022-09-25]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders.
Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S
iScience 25 (7) 104513 [2022-07-15; online 2022-06-02]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Palidis: fast discovery of novel insertion sequences
Carr VR, Pissis SP, Mullany P, ..., Gomez-Cabrero D, Moyes DL
- - (-) - [2022-06-29; online 2022-06-29]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Multi-omics analyses reveal multimodal Fusobacterium DNA damage perturbations in colorectal cancer
Kataria R, Quist J, Lee S, ..., Shoaie S, Grigoriadis A
- - (-) - [2022-05-25; online 2022-05-25]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Metabolic modelling of the human gut microbiome in type 2 diabetes patients in response to metformin treatment
Ezzamouri B, Rosario D, Bidkori G, ..., Uhlen M, Shoaie S
- - (-) - [2022-04-22; online 2022-04-22]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions.
Ghaffari P, Shoaie S, Nielsen LK
J Transl Med 20 (1) 173 [2022-04-11; online 2022-04-11]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach.
Li X, Shong K, Kim W, ..., Zhang C, Mardinoglu A
EBioMedicine 78 (-) 103963 [2022-04-00; online 2022-03-25]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis.
Zeybel M, Arif M, Li X, ..., Borén J, Mardinoglu A
Adv Sci (Weinh) 9 (11) e2104373 [2022-04-00; online 2022-02-07]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
A Gene Co-Expression Network-Based Drug Repositioning Approach Identifies Candidates for Treatment of Hepatocellular Carcinoma.
Yuan M, Shong K, Li X, ..., Zhang C, Mardinoglu A
Cancers (Basel) 14 (6) - [2022-03-19; online 2022-03-19]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial.
Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL
J Hepatol 76 (2) 332-342 [2022-02-00; online 2021-09-24]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Role of Cellular Metabolism during Candida-Host Interactions.
Pellon A, Begum N, Sadeghi Nasab SD, ..., Shoaie S, Moyes DL
Pathogens 11 (2) - [2022-01-28; online 2022-01-28]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Transient Colonising Microbes Promote Gut Dysbiosis and Disease Pathology
Lee S, Meslier V, Bidkhori G, ..., Uhlen M, Shoaie S
- - (-) - [2022-00-00; online 2022-00-00]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

Year 2021

PubMed DOI Crossref
Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme.
Kaynar A, Altay O, Li X, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 22 (24) 13213 [2021-12-08; online 2021-12-08]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
GutMicroNet: an interactive platform for gut microbiome interaction exploration
Arif M, Portlock T, Güngör C, ..., Mardinoglu A, Shoaie S
- - (-) - [2021-11-11; online 2021-11-11]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Revealing the Molecular Mechanisms of Alzheimer's Disease Based on Network Analysis.
Bayraktar A, Lam S, Altay O, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 22 (21) 11556 [2021-10-26; online 2021-10-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.
Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A
Mol Syst Biol 17 (10) e10459 [2021-10-00; online 2021-10-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19.
Altay O, Arif M, Li X, ..., Uhlén M, Mardinoglu A
Adv Sci (Weinh) 8 (17) e2101222 [2021-09-00; online 2021-06-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies.
Ezzamouri B, Shoaie S, Ledesma-Amaro R
Front Microbiol 12 (-) 681982 [2021-08-31; online 2021-08-31]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Advances in the Relationships Between Cow's Milk Protein Allergy and Gut Microbiota in Infants.
Yang Y, Li X, Yang Y, ..., Ji B, Wei Y
Front Microbiol 12 (-) 716667 [2021-08-16; online 2021-08-16]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improve Cognitive Functions without Altering Motor Scores in Parkinson’s Disease
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
- - (-) - [2021-08-04; online 2021-08-04]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer’s Disease
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
- - (-) - [2021-07-20; online 2021-07-20]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Integrative functional analysis uncovers metabolic differences between Candida species
Begum N, Lee S, Pellon A, ..., Moyes D, Shoaie S
- - (-) - [2021-05-25; online 2021-05-25]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis
Zeybel M, Arif M, Li X, ..., Borén J, Mardinoglu A
- - (-) - [2021-05-23; online 2021-05-23]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Reduces Liver Fat in Nonalcoholic Fatty Liver Disease Patients
Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A
- - (-) - [2021-05-23; online 2021-05-23]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production.
Kang D, Shoaie S, Jacquiod S, Sørensen SJ, Ledesma-Amaro R
Microorganisms 9 (5) 1042 [2021-05-12; online 2021-05-12]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Global and temporal state of the human gut microbiome in health and disease
Shoaie S, Lee S, Almeida M, ..., Ehrlich S, Uhlen M
- - (-) - [2021-04-01; online 2021-04-01]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson's disease.
Rosario D, Bidkhori G, Lee S, ..., Mardinoglu A, Shoaie S
Cell Reports 34 (9) 108807 [2021-03-02; online 2021-03-04]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia.
Harzandi A, Lee S, Bidkhori G, ..., Shoaie S, Sharpe CC
iScience 24 (2) 102046 [2021-02-19; online 2021-01-09]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
The Reactobiome Unravels a New Paradigm in Human Gut Microbiome Metabolism
Bidkhori G, Lee S, Edwards LA, ..., Ehrlich SD, Shoaie S
- - (-) - [2021-02-02; online 2021-02-02]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Genome-Scale Metabolic Modelling of the Human Gut Microbiome Reveals Changes of the Glyoxylate and Dicarboxylate Metabolism in Metabolic Disorders
Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S
SSRN Journal - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Cofactor Supplementation Reduces Liver Fat in Nonalcoholic Fatty Liver Disease
Zeybel M, Altay O, Arif M, ..., Boren J, Mardinoglu A
SSRN Journal - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer's Disease
Yulug B, Altay O, Li X, ..., Uhlen M, Mardinoglu A
SSRN Journal - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow

Year 2020

DOI Crossref
Combined Metabolic Activators accelerates recovery in mild-to-moderate COVID-19
Altay O, Arif M, Li X, ..., Uhlén M, Mardinoglu A
- - (-) - [2020-10-05; online 2020-10-05]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals.
Vaga S, Lee S, Ji B, ..., Engstrand L, Shoaie S
Sci Rep 10 (1) 14977 [2020-09-11; online 2020-09-11]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions.
Proffitt C, Bidkhori G, Moyes D, Shoaie S
Microorganisms 8 (9) 1381 [2020-09-09; online 2020-09-09]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome.
Son JW, Shoaie S, Lee S
Endocrinol Metab (Seoul) 35 (3) 507-514 [2020-09-00; online 2020-09-22]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases.
Rosario D, Boren J, Uhlen M, ..., Mardinoglu A, Shoaie S
Front Neurosci 14 (-) 716 [2020-07-08; online 2020-07-08]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
A systems biology approach for studying neurodegenerative diseases.
Lam S, Bayraktar A, Zhang C, ..., Uhlen M, Mardinoglu A
Drug Discov. Today 25 (7) 1146-1159 [2020-07-00; online 2020-05-19]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integrating the "Immunome" in the Stratification of Myelodysplastic Syndromes and Future Clinical Trial Design.
Winter S, Shoaie S, Kordasti S, Platzbecker U
J Clin Oncol 38 (15) 1723-1735 [2020-05-20; online 2020-02-14]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C
Nat. Biotechnol. 38 (4) 504 [2020-04-00; online 2020-04-09]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
MEMOTE for standardized genome-scale metabolic model testing.
Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C
Nat. Biotechnol. 38 (3) 272-276 [2020-03-00; online 2020-03-04]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Abundance and diversity of resistomes differ between healthy human oral cavities and gut.
Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL
Nat Commun 11 (1) 693 [2020-02-04; online 2020-02-04]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Acute Kidney Injury Leading to CKD is Associated with a Persistence of Metabolic Dysfunction and Hypertriglyceridemia
Harzandi A, Bidkhori G, Lee S, ..., Shoaie S, Sharpe C
SSRN Journal - (-) - [2020-00-00; online 2020-00-00]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

Year 2019

DOI Crossref
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals
Vaga S, Lee S, Ji B, ..., Engstrand L, Shoaie S
- - (-) - [2019-10-16; online 2019-10-16]
Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
A widely used sampling device in colorectal cancer screening programmes allows for large-scale microbiome studies.
Gudra D, Shoaie S, Fridmanis D, ..., Leja M, Engstrand L
Gut 68 (9) 1723-1725 [2019-09-00; online 2018-09-21]
Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Abundance and diversity of resistomes differ between healthy human oral cavities and gut
Carr VR, Witherden E, Lee S, ..., Gomez-Cabrero D, Moyes DL
- - (-) - [2019-05-22; online 2019-05-22]
Saeed Shoaie SciLifeLab Fellow

Year 2018

PubMed DOI Crossref
Understanding the Representative Gut Microbiota Dysbiosis in Metformin-Treated Type 2 Diabetes Patients Using Genome-Scale Metabolic Modeling.
Rosario D, Benfeitas R, Bidkhori G, ..., Shoaie S, Mardinoglu A
Front. Physiol. 9 (-) 775 [2018-06-25; online 2018-06-25]
Adil Mardinoglu Affiliated researcher Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C
- - (-) - [2018-06-21; online 2018-06-21]
Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

Year 2016

PubMed DOI Crossref
Systems biology analysis of hepatitis C virus infection reveals the role of copy number increases in regions of chromosome 1q in hepatocellular carcinoma metabolism.
Elsemman IE, Mardinoglu A, Shoaie S, Soliman TH, Nielsen J
Mol Biosyst 12 (5) 1496-1506 [2016-04-26; online 2016-04-05]
Adil Mardinoglu Affiliated researcher Saeed Shoaie SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1