Hartman J

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.

Weitz P, Valkonen M, Solorzano L, ..., Ruusuvuori P, Rantalainen M

Med Image Anal 97 (-) 103257 [2024-10-00; online 2024-07-01]

DDLS Fellow Kimmo Kartasalo

A Multi-Stain Breast Cancer Histological Whole-Slide-Image Data Set from Routine Diagnostics.

Weitz P, Valkonen M, Solorzano L, ..., Ruusuvuori P, Rantalainen M

Sci Data 10 (1) 562 [2023-08-24; online 2023-08-24]

DDLS Fellow Kimmo Kartasalo

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Jun SH, Toosi H, Mold J, ..., Roth A, Lagergren J

Nat Commun 14 (1) 982 [2023-02-22; online 2023-02-22]

Camilla Engblom SciLifeLab Fellow

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue

Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J

- - (-) - [2022-11-24; online 2022-11-24]

Camilla Engblom SciLifeLab Fellow

Predicting Molecular Phenotypes from Histopathology Images: A Transcriptome-Wide Expression-Morphology Analysis in Breast Cancer.

Wang Y, Kartasalo K, Weitz P, ..., Hartman J, Rantalainen M

Cancer Res. 81 (19) 5115-5126 [2021-10-01; online 2021-08-02]

DDLS Fellow Kimmo Kartasalo

CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.

Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N

Nat Commun 10 (1) 4732 [2019-10-18; online 2019-10-18]

Magda Bienko SciLifeLab Fellow