Publications 2022

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Title Authors Journal Published Online
Imaging of the Glucose-Dependent Insulinotropic Polypeptide Receptor Using a Novel Radiolabeled Peptide Rationally Designed Based on Endogenous GIP and Synthetic Exendin-4 Sequences. Velikyan I, Bossart M, Haack T, ..., Wagner M, Eriksson O Pharmaceuticals (Basel, Switzerland) 16 (1) - 2022-12-31 2022-12-31
Obesity-Associated Neurodegeneration Pattern Mimics Alzheimer's Disease in an Observational Cohort Study. Morys F, Potvin O, Zeighami Y, ..., Dagher A, Alzheimer’s Disease Neuroimaging Initiative J. Alzheimers Dis. 91 (3) 1059-1071 2022-12-25 2022-12-25
Modulating glycosphingolipid metabolism and autophagy improves outcomes in pre-clinical models of myeloma bone disease. Leng H, Zhang H, Li L, ..., Simon AK, Horwood NJ Nat Commun 13 (1) 7868 2022-12-22 2022-12-22
Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation Coulier A, Singh P, Sturrock M, Hellander A PLoS Comput Biol 18 (12) e1010683 2022-12-15 2022-12-15
Strobealign: flexible seed size enables ultra-fast and accurate read alignment. Sahlin K Genome Biol. 23 (1) 260 2022-12-15 2022-12-15
Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth. Cui Z, Pines AR, Larsen B, ..., Fan Y, Satterthwaite TD Biol. Psychiatry 92 (12) 973-983 2022-12-15 2022-05-18
Madagascar's extraordinary biodiversity: Threats and opportunities. Ralimanana H, Perrigo AL, Smith RJ, ..., Zizka A, Antonelli A Science (New York, N.Y.) 378 (6623) eadf1466 2022-12-02 2022-12-02
Madagascar's extraordinary biodiversity: Evolution, distribution, and use. Antonelli A, Smith RJ, Perrigo AL, ..., Zizka A, Ralimanana H Science (New York, N.Y.) 378 (6623) eabf0869 2022-12-02 2022-12-02
Higher risk of severe hypoglycemia in children and adolescents with a rapid loss of C-peptide during the first 6 years after type 1 diabetes diagnosis Grönberg A, Espes D, Carlsson P, Ludvigsson J BMJ Open Diabetes Res Care - (-) - 2022-12-01 2022-11-16
High-efficiency transfection of<i>Acanthamoeba castellanii</i>using a cationic polymer Moreno AB, Ek V, Eriksson J, Sellin ME, Guy L - - (-) - 2022-12-01 2022-12-01
Teasing apart the joint effect of demography and natural selection in the birth of a contact zone. Li L, Milesi P, Tiret M, ..., Wu HX, Lascoux M New Phytol. 236 (5) 1976-1987 2022-12-00 2022-09-30
Inorganic nanoparticles for oral drug delivery: opportunities, barriers, and future perspectives Asad S, Jacobsen AC, Teleki A Current Opinion in Chemical Engineering 38 (-) 100869 2022-12-00 2022-12-00
How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus. Zhang Z, Kryvokhyzha D, Orsucci M, ..., Milesi P, Lascoux M New Phytol. 236 (6) 2344-2357 2022-12-00 2022-09-30
Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle. Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA Front Microbiol 13 (-) 1005215 2022-11-30 2022-11-30
Gasdermin D is the only Gasdermin that provides non-redundant protection against acute<i>Salmonella</i>gut infection Fattinger SA, Maurer L, Geiser P, ..., Sellin ME, Hardt WD - - (-) - 2022-11-25 2022-11-25
Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J - - (-) - 2022-11-24 2022-11-24
CBP-HSF2 structural and functional interplay in Rubinstein-Taybi neurodevelopmental disorder. de Thonel A, Ahlskog JK, Daupin K, ..., Sistonen L, Mezger V Nat Commun 13 (1) 7002 2022-11-16 2022-11-16
Structure of the reduced microsporidian proteasome bound by PI31-like peptides in dormant spores. Jespersen N, Ehrenbolger K, Winiger RR, ..., Vossbrinck CR, Barandun J Nat Commun 13 (1) 6962 2022-11-15 2022-11-15
Multi-foci parallelised RESOLFT nanoscopy in an extended field-of-view. Casas Moreno X, Pennacchietti F, Minet G, ..., Barabas F, Testa I J Microsc - (-) - 2022-11-14 2022-11-14
Genomic trajectories of a near-extinction event in the Chatham Island black robin. von Seth J, van der Valk T, Lord E, ..., Robertson BC, Dussex N BMC Genomics 23 (1) 747 2022-11-10 2022-11-10
Super-Resolution Microscopy Opens New Doors to Life at the Nanoscale. Fuhrmann M, Gockel N, Arizono M, ..., Testa I, Willig KI J. Neurosci. 42 (45) 8488-8497 2022-11-09 2022-11-10
Lineage-specific targets of positive selection in three leaf beetles with different defence capacity against a parasitic wasp Yang X, Wheat C, Slotte T, Hamback P - - (-) - 2022-11-04 2022-11-04
Grey matter morphology in women with premenstrual dysphoric disorder treated with a selective progesterone receptor modulator. Kaltsouni E, Dubol M, Wikström J, ..., Sundström-Poromaa I, Comasco E Eur Neuropsychopharmacol 65 (-) 35-43 2022-11-04 2022-11-04
Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D - - (-) - 2022-11-01 2022-11-01
Pregnancy induces pancreatic insulin secretion in women with long-standing type 1 diabetes. Espes D, Magnusson L, Caballero-Corbalan J, ..., Casas R, Carlsson PO BMJ Open Diabetes Res Care 10 (6) - 2022-11-00 2022-11-10
Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. Covitz S, Tapera TM, Adebimpe A, ..., Cieslak M, Satterthwaite TD NeuroImage 263 (-) 119609 2022-11-00 2022-09-03
Chemical traits of cerebral amyloid angiopathy in familial British-, Danish-, and non-Alzheimer's dementias. Michno W, Koutarapu S, Camacho R, ..., Lashley T, Hanrieder J J. Neurochem. 163 (3) 233-246 2022-11-00 2022-09-25
Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) - assessing the dynamic associations between the microbiome and maternal and neonatal adverse events. Fransson E, Gudnadottir U, Hugerth LW, ..., Brusselaers N, Engstrand L BMJ Open 12 (10) e065825 2022-10-26 2022-10-26
Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T Curr. Biol. 32 (20) 4360-4371.e6 2022-10-24 2022-09-09
Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5. Kampen S, Rodríguez D, Jørgensen M, ..., Lebon G, Carlsson J ACS chemical biology 17 (10) 2744-2752 2022-10-21 2022-09-23
Influence of the extracellular domain size on the dynamic behavior of membrane proteins. Gurdap CO, Wedemann L, Sych T, Sezgin E Biophys. J. 121 (20) 3826-3836 2022-10-18 2022-09-14
A new framework for detecting copy number variants from single nucleotide polymorphism data: ‘rCNV’, a versatile R package for paralogs and CNVs detection Karunarathne P, Zhou Q, Schliep K, Milesi P - - (-) - 2022-10-18 2022-10-18
Far Red-Shifted CdTe Quantum Dots for Multicolour Stimulated Emission Depletion Nanoscopy. Alvelid J, Bucci A, Testa I Chemphyschem - (-) e202200698 2022-10-14 2022-10-14
The heat shock protein LarA activates the Lon protease at the onset of proteotoxic stress Omnus DJ, Fink MJ, Kallazhi A, Zaragoza MX, Jonas K - - (-) - 2022-10-10 2022-10-10
Extending fluorescence anisotropy to large complexes using reversibly switchable proteins. Volpato A, Ollech D, Alvelid J, ..., Ingaramo M, Testa I Nat. Biotechnol. - (-) - 2022-10-10 2022-10-10
Correlative Chemical Imaging Identifies Amyloid Peptide Signatures of Neuritic Plaques and Dystrophy in Human Sporadic Alzheimer's Disease. Koutarapu S, Ge J, Jha D, ..., Michno W, Hanrieder J Brain Connect - (-) - 2022-10-07 2022-10-07
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses. Gross SM, Dane MA, Smith RL, ..., Gray JW, Heiser LM Commun Biol 5 (1) 1066 2022-10-07 2022-10-07
aMeta: an accurate and memory-efficient ancient Metagenomic profiling workflow Pochon Z, Bergfeldt N, Kırdök E, ..., Unneberg P, Oskolkov N - - (-) - 2022-10-05 2022-10-05
Molecular programming modulates hepatic lipid metabolism and adult metabolic risk in the offspring of obese mothers in a sex-specific manner. Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M Commun Biol 5 (1) 1057 2022-10-04 2022-10-04
Probing effects of the SARS-CoV-2 E protein on membrane curvature and intracellular calcium. Mehregan A, Pérez-Conesa S, Zhuang Y, ..., Ulens C, Delemotte L Biochim Biophys Acta Biomembr 1864 (10) 183994 2022-10-01 2022-06-18
Noncoding RNAs and RNA-binding proteins: emerging governors of liver physiology and metabolic diseases. Sommerauer C, Kutter C Am. J. Physiol., Cell Physiol. 323 (4) C1003-C1017 2022-10-01 2022-08-15
Unravelling the Phylogeny of a Common Intestinal Protist: Intrageneric Diversity of Endolimax. Hocke EF, Jamy M, Burki F, Clark CG, Stensvold CR Protist 173 (5) 125908 2022-10-00 2022-09-07
The mGlu5 Receptor Protomer-Mediated Dopamine D2 Receptor Trans-Inhibition Is Dependent on the Adenosine A2A Receptor Protomer: Implications for Parkinson's Disease. Romero-Fernandez W, Taura JJ, Crans RAJ, ..., Fuxe K, Borroto-Escuela DO Mol. Neurobiol. 59 (10) 5955-5969 2022-10-00 2022-07-12
Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells. Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C Genome Res 32 (10) 1876-1891 2022-10-00 2022-09-30
Spatiotemporally controlled generation of NTPs for single-molecule studies. Sabantsev A, Mao G, Aguirre Rivera J, ..., Khodorkovskiy M, Deindl S Nat. Chem. Biol. 18 (10) 1144-1151 2022-10-00 2022-09-21
Markov state modelling reveals heterogeneous drug-inhibition mechanism of Calmodulin. Westerlund AM, Sridhar A, Dahl L, ..., Bodnar AY, Delemotte L PLoS Comput Biol 18 (10) e1010583 2022-10-00 2022-10-07
Global patterns and rates of habitat transitions across the eukaryotic tree of life. Jamy M, Biwer C, Vaulot D, ..., Massana R, Burki F Nat Ecol Evol 6 (10) 1458-1470 2022-10-00 2022-08-04
Event-triggered STED imaging. Alvelid J, Damenti M, Sgattoni C, Testa I Nat. Methods 19 (10) 1268-1275 2022-10-00 2022-09-08
Elevation and plant species identity jointly shape a diverse arbuscular mycorrhizal fungal community in the High Arctic. Rasmussen PU, Abrego N, Roslin T, ..., Hugerth LW, Tack AJM New Phytol. 236 (2) 671-683 2022-10-00 2022-07-15
Di-n-Butyl Phthalate and Its Monoester Metabolite Impairs Steroid Hormone Biosynthesis in Human Cells: Mechanistic In Vitro Studies. Källsten L, Pierozan P, Martin JW, Karlsson O Cells 11 (19) - 2022-09-27 2022-09-27
Integrative functional analysis uncovers metabolic differences between Candida species. Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S Commun Biol 5 (1) 1013 2022-09-26 2022-09-26
Host-mycobiome metabolic interactions in health and disease. Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S Gut Microbes 14 (1) 2121576 2022-09-25 2022-09-25
Ribosomal protein with conserved function has entirely different structures in different organisms Schierholz L, Brown CR, Helena-Bueno K, ..., Barandun J, Melnikov SV - - (-) - 2022-09-22 2022-09-22
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes Richter DJ, Berney C, Strassert JFH, ..., Burki F, de Vargas C - 2 (-) - 2022-09-20 2022-09-20
TET2-mutant clonal hematopoiesis and risk of gout. Agrawal M, Niroula A, Cunin P, ..., Rao DA, Ebert BL Blood 140 (10) 1094-1103 2022-09-08 2022-06-18
Of problems and opportunities-How to treat and how to not treat crystallographic fragment screening data. Weiss MS, Wollenhaupt J, Correy GJ, ..., Thunissen M, Pearce NM Protein Sci. 31 (9) e4391 2022-09-00 2022-08-31
Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery. Wikström T, Abrahamsson S, Bengtsson-Palme J, ..., Valentin L, Hagberg H Clin Transl Med 12 (9) e1023 2022-09-00 2022-09-15
Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018-2022. Carroll LM, Matle I, Kovac J, Cheng RA, Wiedmann M Emerg Infect Dis 28 (9) 1877-1881 2022-09-00 2022-08-24
Enhanced cytotoxicity of a novel family of ATPase inhibitors in colorectal cancer cells with high NAT2 activity. Zhang X, Akcan E, Correia M, ..., Globisch D, Sjöblom T Biochem. Pharmacol. 203 (-) 115184 2022-09-00 2022-07-22
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties. Ragaller F, Andronico L, Sykora J, ..., Vattulainen I, Sezgin E Open Biol 12 (9) 220175 2022-09-00 2022-09-14
Analysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors. Joffré E, Xiao X, Correia MSP, ..., Zhu B, Sjöling Å Microbiol Spectr 10 (4) e0175521 2022-08-31 2022-07-25
TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation. Stolz P, Mantero AS, Tvardovskiy A, ..., Elsässer SJ, Bultmann S Nucleic Acids Res. 50 (15) 8491-8511 2022-08-26 2022-07-30
Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates. Zadeh CO, Huggins JR, Sarmah D, ..., Erdem C, Birtwistle MR ACS Omega 7 (33) 28912-28923 2022-08-23 2022-08-11
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome. van der Valk T, Dehasque M, Chacón-Duque JC, ..., Díez-Del-Molino D, Dalén L iScience 25 (8) 104826 2022-08-19 2022-08-01
The origin and evolution of open habitats in North America inferred by Bayesian deep learning models. Andermann T, Strömberg CAE, Antonelli A, Silvestro D Nat Commun 13 (1) 4833 2022-08-17 2022-08-17
Zeitotox: Toxicology and the Rhythms of Life. Xiao L, Antczak P, Rüegg J, Behrendt L Environ. Sci. Technol. 56 (16) 11100-11102 2022-08-16 2022-07-27
Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem. Broman E, Izabel-Shen D, Rodríguez-Gijón A, ..., Garcia SL, Nascimento FJA Microbiome 10 (1) 126 2022-08-15 2022-08-15
Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. Hansen JY, Shafiei G, Vogel JW, ..., Dagher A, Misic B Nat Commun 13 (1) 4682 2022-08-10 2022-08-10
A Universal Language for Finding Mass Spectrometry Data Patterns Jarmusch AK, Aron AT, Petras D, ..., Dorrestein PC, Wang M - - (-) - 2022-08-07 2022-08-07
Adult Exposure to Di-N-Butyl Phthalate (DBP) Induces Persistent Effects on Testicular Cell Markers and Testosterone Biosynthesis in Mice. Källsten L, Almamoun R, Pierozan P, ..., Martin JW, Karlsson O Int J Mol Sci 23 (15) - 2022-08-05 2022-08-05
What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance? Birkeland S, Slotte T, Krag Brysting A, ..., Brochmann C, Nowak MD Mol. Ecol. 31 (16) 4271-4285 2022-08-00 2022-07-15
The anti-inflammatory peptide Catestatin blocks chemotaxis. Muntjewerff EM, Parv K, Mahata SK, ..., Christoffersson G, van den Bogaart G J Leukoc Biol 112 (2) 273-278 2022-08-00 2021-12-22
Recent and local diversification of Central American understorey palms Cano Á, Stauffer FW, Andermann T, ..., Perret M, Antonelli A Global Ecol. Biogeogr. 31 (8) 1513-1525 2022-08-00 2022-05-11
Photophysiological response of Symbiodiniaceae single cells to temperature stress. Xiao L, Johansson S, Rughöft S, ..., Tenje M, Behrendt L ISME J 16 (8) 2060-2064 2022-08-00 2022-04-26
Mutation accumulation opposes polymorphism: supergenes and the curious case of balanced lethals. Berdan EL, Blanckaert A, Butlin RK, ..., Slotte T, Wielstra B Philos. Trans. R. Soc. Lond., B, Biol. Sci. 377 (1856) 20210199 2022-08-00 2022-06-13
Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato. Carroll LM, Marston CK, Kolton CB, ..., Weiner ZP, Kovac J Pathogens 11 (8) - 2022-07-29 2022-07-29
Issues and recommendations for the residual approach to quantifying cognitive resilience and reserve. Elman JA, Vogel JW, Bocancea DI, ..., Kremen WS, Alzheimer’s Disease Neuroimaging Initiative Alzheimers Res Ther 14 (1) 102 2022-07-25 2022-07-25
Robust and integrative Bayesian neural networks for likelihood-free parameter inference Wrede F, Eriksson R, Jiang R, ..., Hellander A, Singh P - - (-) - 2022-07-18 2022-07-18
Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders. Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S iScience 25 (7) 104513 2022-07-15 2022-06-02
Cryo-EM structure of the human Kv3.1 channel reveals gating control by the cytoplasmic T1 domain. Chi G, Liang Q, Sridhar A, ..., Covarrubias M, Dürr KL Nat Commun 13 (1) 4087 2022-07-15 2022-07-15
Myeloid cell-specific topoisomerase 1 inhibition using DNA origami mitigates neuroinflammation. Zhu K, Wang Y, Sarlus H, ..., Högberg B, Harris RA EMBO Rep. 23 (7) e54499 2022-07-05 2022-05-20
Biosynthetic potential of the global ocean microbiome. Paoli L, Ruscheweyh HJ, Forneris CC, ..., Piel J, Sunagawa S Nature 607 (7917) 111-118 2022-07-00 2022-06-22
Adenosine A2A receptor antagonists: from caffeine to selective non-xanthines. Jacobson KA, Gao ZG, Matricon P, Eddy MT, Carlsson J Br J Pharmacol 179 (14) 3496-3511 2022-07-00 2020-06-19
The healthy female microbiome across body sites: effect of hormonal contraceptives and the menstrual cycle. Krog MC, Hugerth LW, Fransson E, ..., Schuppe-Koistinen I, Nielsen HS Hum. Reprod. 37 (7) 1525-1543 2022-06-30 2022-05-14
Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter- and Intranational Surveillance and Source Tracking. Carroll LM, Pierneef R, Mathole A, Atanda A, Matle I Microbiol Spectr 10 (3) e0070022 2022-06-29 2022-04-27
HSFs drive transcription of distinct genes and enhancers during oxidative stress and heat shock. Himanen SV, Puustinen MC, Da Silva AJ, Vihervaara A, Sistonen L Nucleic Acids Res. 50 (11) 6102-6115 2022-06-24 2022-06-11
The VirF21:VirF30 protein ratio is affected by temperature and impacts Shigella flexneri host cell invasion. Skovajsová E, Colonna B, Prosseda G, Sellin ME, Di Martino ML FEMS Microbiol. Lett. 369 (1) - 2022-06-22 2022-05-07
A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling. Erdem C, Mutsuddy A, Bensman EM, ..., Feltus FA, Birtwistle MR Nat Commun 13 (1) 3555 2022-06-21 2022-06-21
T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles. Céspedes PF, Jainarayanan A, Fernández-Messina L, ..., Sánchez-Madrid F, Dustin ML Nat Commun 13 (1) 3460 2022-06-16 2022-06-16
Differential grey matter structure in women with premenstrual dysphoric disorder: evidence from brain morphometry and data-driven classification. Dubol M, Stiernman L, Wikström J, ..., Bixo M, Comasco E Transl Psychiatry 12 (1) 250 2022-06-15 2022-06-15
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species. Kutschera VE, Kierczak M, van der Valk T, ..., Dalén L, Díez-Del-Molino D BMC Bioinformatics 23 (1) 228 2022-06-13 2022-06-13
Incidensen av levercancer ökar över hela världen Kutter C Onkologi i Sverige - (-) - 2022-06-10 2022-06-10
FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development. Luu TT, Søndergaard JN, Peña-Pérez L, ..., Månsson R, Kadri N Front Immunol 13 (-) 854312 2022-06-09 2022-06-09
Erratum: Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes. Carravilla P, Dasgupta A, Zhurgenbayeva G, ..., Sezgin E, Eggeling C Biophys Rep (N Y) 2 (2) None 2022-06-08 2022-06-08
Subtype-specific responses of hKv7.4 and hKv7.5 channels to polyunsaturated fatty acids reveal an unconventional modulatory site and mechanism. Frampton DJA, Choudhury K, Nikesjö J, Delemotte L, Liin SI Elife 11 (-) - 2022-06-01 2022-06-01
The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe. Cornille A, Tiret M, Salcedo A, ..., Wright SI, Lascoux M AoB Plants 14 (3) plac011 2022-06-00 2022-04-02
The limits of human microRNA annotation have been met. Fromm B, Zhong X, Tarbier M, Friedländer MR, Hackenberg M RNA 28 (6) 781-785 2022-06-00 2022-03-02
TGFβ selects for pro-stemness over pro-invasive phenotypes during cancer cell epithelial-mesenchymal transition. Tsubakihara Y, Ohata Y, Okita Y, ..., Heldin CH, Moustakas A Mol Oncol 16 (12) 2330-2354 2022-06-00 2022-04-10
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment. Pomerantz A, Sahlin K, Vasiljevic N, ..., Ogden R, Prost S Nat Protoc 17 (6) 1415-1443 2022-06-00 2022-04-11
Potato genomes pave the way to crop improvement. Gutiérrez-Valencia J, Slotte T Nature 606 (7914) 472-473 2022-06-00 2022-06-09
Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation. Kumar B, Navarro C, Winblad N, ..., Lanner F, Elsässer SJ Nat. Cell Biol. 24 (6) 845-857 2022-06-00 2022-05-30
OPUSeq simplifies detection of low-frequency DNA variants and uncovers fragmentase-associated artifacts. Alekseenko A, Wang J, Barrett D, Pelechano V NAR Genomics and Bioinformatics 4 (2) lqac048 2022-06-00 2022-06-27
Mechanism of mitoribosomal small subunit biogenesis and preinitiation. Itoh Y, Khawaja A, Laptev I, ..., Rorbach J, Amunts A Nature 606 (7914) 603-608 2022-06-00 2022-06-08
Inhibition of Respiratory Syncytial Virus Infection by Small Non-Coding RNA Fragments. Pålsson SA, Sekar V, Kutter C, Friedländer MR, Spetz AL Int J Mol Sci 23 (11) - 2022-05-26 2022-05-26
Simultaneous visualization of flow fields and oxygen concentrations to unravel transport and metabolic processes in biological systems. Ahmerkamp S, Jalaluddin FM, Cui Y, ..., Koren K, Behrendt L Cell Rep Methods 2 (5) 100216 2022-05-23 2022-05-23
Hyperthermia-Induced In Situ Drug Amorphization by Superparamagnetic Nanoparticles in Oral Dosage Forms Ansari SR, Hempel NJ, Asad S, ..., Löbmann K, Teleki A ACS Appl Mater Interfaces 14 (19) 21978-21988 2022-05-18 2022-04-22
The vaginal microbiome and the risk of preterm birth: a systematic review and network meta-analysis. Gudnadottir U, Debelius JW, Du J, ..., Fransson E, Brusselaers N Sci Rep 12 (1) 7926 2022-05-13 2022-05-13
Impact of Genome Reduction in Microsporidia. Jespersen N, Monrroy L, Barandun J Exp Suppl 114 (-) 1-42 2022-05-12 2022-05-12
Patatin-like phospholipase CapV in Escherichia coli - morphological and physiological effects of one amino acid substitution. Li F, Cao L, Bähre H, ..., Rohde M, Römling U NPJ Biofilms Microbiomes 8 (1) 39 2022-05-11 2022-05-11
Lipid-Protein Interactions in Plasma Membrane Organization and Function. Sych T, Levental KR, Sezgin E Annu Rev Biophys 51 (-) 135-156 2022-05-09 2022-01-04
Maternal prenatal depressive symptoms and toddler behavior: an umbilical cord blood epigenome-wide association study. Kallak TK, Fransson E, Bränn E, ..., Lyle R, Skalkidou A Transl Psychiatry 12 (1) 186 2022-05-05 2022-05-05
Genetics of smoking and risk of clonal hematopoiesis. Levin MG, Nakao T, Zekavat SM, ..., Damrauer SM, Natarajan P Sci Rep 12 (1) 7248 2022-05-04 2022-05-04
The right bug in the right place: opportunities for bacterial vaginosis treatment. Wu S, Hugerth LW, Schuppe-Koistinen I, Du J NPJ Biofilms Microbiomes 8 (1) 34 2022-05-02 2022-05-02
Subtypes of Alzheimer's disease: questions, controversy, and meaning. Vogel JW, Hansson O Trends Neurosci 45 (5) 342-345 2022-05-00 2022-02-25
Scalable federated machine learning with FEDn Ekmefjord M, Ait-Mlouk A, Alawadi S, ..., Toor S, Hellander A - - (-) - 2022-05-00 2022-05-00
Glucagonlike Peptide-1 Receptor Imaging in Individuals with Type 2 Diabetes. Eriksson O, Velikyan I, Haack T, ..., Tillner J, Wagner M Journal of nuclear medicine : official publication, Society of Nuclear Medicine 63 (5) 794-800 2022-05-00 2021-09-09
Direct Observation of Na,K‐ATPase Oligomers in The Plasma Membrane of Living Cells by FRET‐FCS Nordahl L, Wennmalm S, Jönsson J, ..., Akkuratov EE, Brismar H The FASEB Journal 36 (S1) - 2022-05-00 2022-05-13
Clonal Hematopoiesis and CKD Progression. Niroula A, Belizaire R J. Am. Soc. Nephrol. 33 (5) 878-879 2022-05-00 2022-04-06
A motile doublet form of Salmonella Typhimurium diversifies target search behavior at the epithelial surface. Ek V, Fattinger SA, Florbrant A, ..., Eriksson J, Sellin ME Mol. Microbiol. 117 (5) 1156-1172 2022-05-00 2022-04-12
Understanding immune signaling using advanced imaging techniques. Brameshuber M, Klotzsch E, Ponjavic A, Sezgin E Biochem. Soc. Trans. 50 (2) 853-866 2022-04-29 2022-03-29
Global Estimation and Mapping of the Conservation Status of Tree Species Using Artificial Intelligence. Silva SV, Andermann T, Zizka A, Kozlowski G, Silvestro D Front Plant Sci 13 (-) 839792 2022-04-29 2022-04-29
Cancer cells use self-inflicted DNA breaks to evade growth limits imposed by genotoxic stress. Larsen BD, Benada J, Yung PYK, ..., Bartek J, Sørensen CS Science (New York, N.Y.) 376 (6592) 476-483 2022-04-29 2022-04-28
Multiple Cortical to Striatal Accumulation Trajectories of β-Amyloid: Do All Roads Lead to Rome? Vogel JW, Tosun D Neurology 98 (17) 695-696 2022-04-26 2022-03-25
A DNA molecular printer capable of programmable positioning and patterning in two dimensions. Benson E, Marzo RC, Bath J, Turberfield AJ Sci Robot 7 (65) eabn5459 2022-04-20 2022-04-20
The Role of Bio‐based Excipients in the Formulation of Lipophilic Nutraceuticals Teleki A, Tsekou C, Connolly A - - (-) 315-336 2022-04-19 2022-04-00
Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning. Andermann T, Antonelli A, Barrett RL, Silvestro D Front Plant Sci 13 (-) 839407 2022-04-19 2022-04-19
Associations of prenatal exposure to mixtures of organochlorine pesticides and smoking and drinking behaviors in adolescence. Dickerson AS, Deng Z, Ransome Y, Factor-Litvak P, Karlsson O Environ. Res. 206 (-) 112431 2022-04-15 2021-11-27
Differentiating amyloid beta spread in autosomal dominant and sporadic Alzheimer's disease. Levitis E, Vogel JW, Funck T, ..., Dominantly Inherited Alzheimer Network , Alzheimer’s Disease Neuroimaging Initiative Brain Commun 4 (3) fcac085 2022-04-13 2022-04-13
Irritable bowel syndrome and microbiome; Switching from conventional diagnosis and therapies to personalized interventions. Ghaffari P, Shoaie S, Nielsen LK J Transl Med 20 (1) 173 2022-04-11 2022-04-11
Experiences From Developing Software for Large X-Ray Crystallography-Driven Protein-Ligand Studies. Pearce NM, Skyner R, Krojer T Front Mol Biosci 9 (-) 861491 2022-04-11 2022-04-11
Grey matter correlates of affective and somatic symptoms of premenstrual dysphoric disorder. Dubol M, Wikström J, Lanzenberger R, ..., Sundström-Poromaa I, Comasco E Sci Rep 12 (1) 5996 2022-04-09 2022-04-09
PET-CT imaging of pulmonary inflammation using [68Ga]Ga-DOTA-TATE. Puuvuori E, Liggieri F, Velikyan I, ..., Perchiazzi G, Eriksson O EJNMMI Res 12 (1) 19 2022-04-08 2022-04-08
Mendelian randomization supports bidirectional causality between telomere length and clonal hematopoiesis of indeterminate potential. Nakao T, Bick AG, Taub MA, ..., NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium , Natarajan P Sci Adv 8 (14) eabl6579 2022-04-08 2022-04-06
Structural basis for PoxtA-mediated resistance to phenicol and oxazolidinone antibiotics. Crowe-McAuliffe C, Murina V, Turnbull KJ, ..., Wilson DN, Hauryliuk V Nat Commun 13 (1) 1860 2022-04-06 2022-04-06
Uniting diversity to create a more inclusive academic environment. Delemotte L, Garcia SL, Rodríguez-Gijón A, Sezgin E, Vihervaara A J. Cell. Sci. 135 (7) - 2022-04-01 2022-04-12
Giant plasma membrane vesicles to study plasma membrane structure and dynamics. Sezgin E Biochim Biophys Acta Biomembr 1864 (4) 183857 2022-04-01 2022-01-04
Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses. Ferreira PL, Batista R, Andermann T, ..., Bacon CD, Antonelli A Mol. Phylogenet. Evol. 169 (-) 107432 2022-04-00 2022-02-04
Prediction of drug candidates for clear cell renal cell carcinoma using a systems biology-based drug repositioning approach. Li X, Shong K, Kim W, ..., Zhang C, Mardinoglu A EBioMedicine 78 (-) 103963 2022-04-00 2022-03-25
Long-term SARS-CoV-2-specific and cross-reactive cellular immune responses correlate with humoral responses, disease severity, and symptomatology. Laurén I, Havervall S, Ng H, ..., Thålin C, Mangsbo S Immun Inflamm Dis 10 (4) e595 2022-04-00 2022-03-30
IgE cross-linking induces activation of human and mouse mast cell progenitors. Méndez-Enríquez E, Salomonsson M, Eriksson J, ..., Sellin ME, Hallgren J J. Allergy Clin. Immunol. 149 (4) 1458-1463 2022-04-00 2021-09-04
Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging. Mishra K, Fuenzalida-Werner JP, Pennacchietti F, ..., Ntziachristos V, Stiel AC Nat. Biotechnol. 40 (4) 598-605 2022-04-00 2021-11-29
Brain charts for the human lifespan. Bethlehem RAI, Seidlitz J, White SR, ..., Bullmore ET, Alexander-Bloch AF Nature 604 (7906) 525-533 2022-04-00 2022-04-06
Associations between Listeria monocytogenes genomic characteristics and adhesion to polystyrene at 8 °C. Mahoney DBJ, Falardeau J, Hingston P, ..., Jang SS, Wang S Food Microbiol 102 (-) 103915 2022-04-00 2021-09-23
Acute sleep loss alters circulating fibroblast growth factor 21 levels in humans: A randomised crossover trial. Mateus Brandão LE, Espes D, Westholm JO, ..., Benedict C, Cedernaes J J Sleep Res 31 (2) e13472 2022-04-00 2021-09-02
The microbiome in reproductive health: protocol for a systems biology approach using a prospective, observational study design. Krog MC, Madsen ME, Bliddal S, ..., Schuppe-Koistinen I, Nielsen HS Hum Reprod Open 2022 (2) hoac015 2022-03-23 2022-03-23
A Gene Co-Expression Network-Based Drug Repositioning Approach Identifies Candidates for Treatment of Hepatocellular Carcinoma. Yuan M, Shong K, Li X, ..., Zhang C, Mardinoglu A Cancers (Basel) 14 (6) - 2022-03-19 2022-03-19
Quantifying RNA synthesis at rate-limiting steps of transcription using nascent RNA-sequencing data. Rabenius A, Chandrakumaran S, Sistonen L, Vihervaara A STAR Protoc 3 (1) 101036 2022-03-18 2022-01-05
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Genome-wide association study on 13 167 individuals identifies regulators of blood CD34+cell levels. Lopez de Lapuente Portilla A, Ekdahl L, Cafaro C, ..., Stefansson K, Nilsson B Blood 139 (11) 1659-1669 2022-03-17 2022-01-11
Norway spruce postglacial recolonization of Fennoscandia. Nota K, Klaminder J, Milesi P, ..., Suyama Y, Parducci L Nat Commun 13 (1) 1333 2022-03-14 2022-03-14
A broad, exposome-type evaluation of xenobiotic phase II biotransformation in human biofluids by LC-MS/MS Fareed Y, Braun D, Flasch M, Globisch D, Warth B - 2 (1) - 2022-03-12 2022-10-12
Sirtuin-1 sensitive lysine-136 acetylation drives phase separation and pathological aggregation of TDP-43. Garcia Morato J, Hans F, von Zweydorf F, ..., Neumann M, Kahle PJ Nat Commun 13 (1) 1223 2022-03-09 2022-03-09
Mechanistic insights into the C55-P targeting lipopeptide antibiotics revealed by structure-activity studies and high-resolution crystal structures. Wood TM, Zeronian MR, Buijs N, ..., Janssen BJC, Martin NI Chem Sci 13 (10) 2985-2991 2022-03-09 2022-02-21
The SWI/SNF subunit BRG1 affects alternative splicing by changing RNA binding factor interactions with nascent RNA. Gañez-Zapater A, Mackowiak SD, Guo Y, ..., Visa N, Östlund Farrants AK Mol. Genet. Genomics 297 (2) 463-484 2022-03-00 2022-02-20
On the origin of TSAR: morphology, diversity and phylogeny of Telonemia. Tikhonenkov DV, Jamy M, Borodina AS, ..., Burki F, Karpov SA Open Biol 12 (3) 210325 2022-03-00 2022-03-16
Epigenetics in the Anthropocene: an interview with Oskar Karlsson. Karlsson O Epigenomics 14 (6) 315-318 2022-03-00 2022-02-23
Clonal Hematopoiesis Is Associated With Higher Risk of Stroke. Bhattacharya R, Zekavat SM, Haessler J, ..., Natarajan P, Reiner AP Stroke 53 (3) 788-797 2022-03-00 2021-11-08
ADAR1- and ADAR2-mediated regulation of maturation and targeting of miR-376b to modulate GABA neurotransmitter catabolism. Widmark A, Sagredo EA, Karlström V, ..., Daniel C, Öhman M J Biol Chem 298 (3) 101682 2022-03-00 2022-02-03
Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction. Begnini F, Geschwindner S, Johansson P, ..., Schiesser S, Kihlberg J J Med Chem 65 (4) 3473-3517 2022-02-24 2022-02-02
White matter microstructure and volume correlates of premenstrual dysphoric disorder. Gu X, Dubol M, Stiernman L, ..., Sundström-Poromaa I, Comasco E J Psychiatry Neurosci 47 (1) E67-E76 2022-02-23 2022-02-23
Ultralarge Virtual Screening Identifies SARS-CoV-2 Main Protease Inhibitors with Broad-Spectrum Activity against Coronaviruses. Luttens A, Gullberg H, Abdurakhmanov E, ..., Danielson UH, Carlsson J Journal of the American Chemical Society 144 (7) 2905-2920 2022-02-23 2022-02-10
Identification of electroporation sites in the complex lipid organization of the plasma membrane. Rems L, Tang X, Zhao F, ..., Testa I, Delemotte L Elife 11 (-) - 2022-02-23 2022-02-23
Genome-wide mapping of G-quadruplex structures with CUT&Tag. Lyu J, Shao R, Kwong Yung PY, Elsässer SJ Nucleic Acids Res. 50 (3) e13 2022-02-22 2021-11-19
Tumorigenic activity of alternative per- and polyfluoroalkyl substances (PFAS): Mechanistic in vitro studies. Pierozan P, Cattani D, Karlsson O Sci. Total Environ. 808 (-) 151945 2022-02-20 2021-11-27
Prevalence and correlates of current suicidal ideation in women with premenstrual dysphoric disorder. Wikman A, Sacher J, Bixo M, ..., Comasco E, Sundström Poromaa I BMC Womens Health 22 (1) 35 2022-02-11 2022-02-11
Genomics and adaptation in forest ecosystems. Neophytou C, Heer K, Milesi P, ..., Rellstab C, Gugerli F Tree Genet Genomes 18 (2) 12 2022-02-09 2022-02-09
Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae. Nadeem A, Berg A, Pace H, ..., Uhlin BE, Wai SN Elife 11 (-) - 2022-02-08 2022-02-08
Expression Profiles of Estrogen-Regulated MicroRNAs in Cancer Cells. Archer A, Kutter C, Williams C Methods in molecular biology (Clifton, N.J.) 2418 (-) 313-343 2022-02-05 2022-02-05
ZFP207 sustains pluripotency by coordinating OCT4 stability, alternative splicing and RNA export. Malla S, Prasad Bhattarai D, Groza P, ..., Kutter C, Aguilo F EMBO Rep. 23 (3) e53191 2022-02-03 2022-01-17
Possible Functional Roles of Patellamides in the Ascidian-Prochloron Symbiosis. Baur P, Kühl M, Comba P, Behrendt L Mar Drugs 20 (2) - 2022-02-02 2022-02-02
High-Definition DIC Imaging Uncovers Transient Stages of Pathogen Infection Cycles on the Surface of Human Adult Stem Cell-Derived Intestinal Epithelium. van Rijn JM, Eriksson J, Grüttner J, ..., Svärd SG, Sellin ME MBio 13 (1) e0002222 2022-02-01 2022-02-01
ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I Elife 11 (-) - 2022-02-01 2022-02-01
Biomarker-Based Prediction of Longitudinal Tau Positron Emission Tomography in Alzheimer Disease. Leuzy A, Smith R, Cullen NC, ..., Stomrud E, Hansson O JAMA Neurol 79 (2) 149-158 2022-02-01 2021-12-21
Structural amyloid plaque polymorphism is associated with distinct lipid accumulations revealed by trapped ion mobility mass spectrometry imaging. Michno W, Wehrli PM, Koutarapu S, ..., Hopf C, Hanrieder J J. Neurochem. 160 (4) 482-498 2022-02-00 2021-12-26
Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial. Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL J Hepatol 76 (2) 332-342 2022-02-00 2021-09-24
<i>IUCNN</i> – Deep learning approaches to approximate species' extinction risk Zizka A, Andermann T, Silvestro D Diversity and Distributions 28 (2) 227-241 2022-02-00 2021-12-16
Meta-analysis reveals the global picture of antibiotic resistance gene prevalence across environments Abramova A, Berendonk TU, Bengtsson-Palme J bioRxiv preprint - (-) - 2022-01-30 2022-01-30
Sequence specificity in DNA binding is mainly governed by association. Marklund E, Mao G, Yuan J, ..., Deindl S, Elf J Science (New York, N.Y.) 375 (6579) 442-445 2022-01-28 2022-01-27
Role of Cellular Metabolism during Candida-Host Interactions. Pellon A, Begum N, Sadeghi Nasab SD, ..., Shoaie S, Moyes DL Pathogens 11 (2) - 2022-01-28 2022-01-28
Irisin-A Pancreatic Islet Hormone. Norman D, Drott CJ, Carlsson PO, Espes D Biomedicines 10 (2) - 2022-01-25 2022-01-25
BioRssay: an R package for analyses of bioassays and probit graphs. Karunarathne P, Pocquet N, Labbé P, Milesi P Parasit Vectors 15 (1) 35 2022-01-24 2022-01-24
Association of clonal hematopoiesis with chronic obstructive pulmonary disease. Miller PG, Qiao D, Rojas-Quintero J, ..., Ebert BL, COPDGene Study Investigators, National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine Consortium Blood 139 (3) 357-368 2022-01-20 2021-12-03
CCT3-LINC00326 axis regulates hepatocarcinogenic lipid metabolism. Søndergaard JN, Sommerauer C, Atanasoai I, ..., Barragan I, Kutter C Gut 71 (10) 2081-2092 2022-01-12 2022-01-12
Functional dissection of inherited non-coding variation influencing multiple myeloma risk. Ajore R, Niroula A, Pertesi M, ..., Houlston R, Nilsson B Nat Commun 13 (1) 151 2022-01-10 2022-01-10
A bispecific monomeric nanobody induces spike trimer dimers and neutralizes SARS-CoV-2 in vivo. Hanke L, Das H, Sheward DJ, ..., Murrell B, McInerney GM Nat Commun 13 (1) 155 2022-01-10 2022-01-10
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Fromm B, Høye E, Domanska D, ..., Friedländer MR, Peterson KJ Nucleic Acids Res. 50 (D1) D204-D210 2022-01-07 2021-12-02
TRP channels: branching out into the fungal kingdom. Hellmich UA, Delemotte L Structure 30 (1) 2-4 2022-01-06 2022-01-08
A Genomic Perspective Across Earth's Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy. Rodríguez-Gijón A, Nuy JK, Mehrshad M, ..., Woyke T, Garcia SL Front Microbiol 12 (-) 761869 2022-01-05 2022-01-05
Effects on weight loss and glycemic control with SAR441255, a potent unimolecular peptide GLP-1/GIP/GCG receptor triagonist. Bossart M, Wagner M, Elvert R, ..., Nitsche A, Konkar A Cell Metab. 34 (1) 59-74.e10 2022-01-04 2021-12-20
An open state of a voltage-gated sodium channel involving a π-helix and conserved pore-facing asparagine. Choudhury K, Kasimova MA, McComas S, Howard RJ, Delemotte L Biophys. J. 121 (1) 11-22 2022-01-04 2021-12-08
Revisiting sORFs: overcoming challenges to identify and characterize functional microproteins. Schlesinger D, Elsässer SJ FEBS J. 289 (1) 53-74 2022-01-00 2021-02-24
Putative regulation of macrophage-mediated inflammation by catestatin. Muntjewerff EM, Christoffersson G, Mahata SK, van den Bogaart G Trends Immunol. 43 (1) 41-50 2022-01-00 2021-11-27
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods. Jiang R, Singh P, Wrede F, Hellander A, Petzold L PLoS Comput Biol 18 (1) e1009830 2022-01-00 2022-01-31
Distinct transcription kinetics of pluripotent cell states. Shao R, Kumar B, Lidschreiber K, ..., Cramer P, Elsässer SJ Mol Syst Biol 18 (1) e10407 2022-01-00 2022-01-13
Cell type-specific analysis by single-cell profiling identifies a stable mammalian tRNA-mRNA interface and increased translation efficiency in neurons. Gao W, Gallardo-Dodd CJ, Kutter C Genome Res 32 (1) 97-110 2022-01-00 2021-12-02
Enhanced Sampling Methods for Molecular Dynamics Simulations [Article v1.0] Hénin J, Lelièvre T, Shirts MR, Valsson O, Delemotte L LiveCoMS 4 (1) - 2022-00-00 2022-00-00
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