Publications 2022

Title Authors Journal Published Online
Lipoic Acid Conjugated Boron Hybrids Enhance Wound Healing and Antimicrobial Processes. Türkez H, Yıldırım ÖÇ, Öner S, ..., Yapça ÖE, Mardinoğlu A Pharmaceutics 15 (1) - 2022-12-31 2022-12-31
Imaging of the Glucose-Dependent Insulinotropic Polypeptide Receptor Using a Novel Radiolabeled Peptide Rationally Designed Based on Endogenous GIP and Synthetic Exendin-4 Sequences. Velikyan I, Bossart M, Haack T, ..., Wagner M, Eriksson O Pharmaceuticals (Basel, Switzerland) 16 (1) - 2022-12-31 2022-12-31
Obesity-Associated Neurodegeneration Pattern Mimics Alzheimer's Disease in an Observational Cohort Study. Morys F, Potvin O, Zeighami Y, ..., Dagher A, Alzheimer’s Disease Neuroimaging Initiative J. Alzheimers Dis. 91 (3) 1059-1071 2022-12-25 2022-12-25
Modulating glycosphingolipid metabolism and autophagy improves outcomes in pre-clinical models of myeloma bone disease. Leng H, Zhang H, Li L, ..., Simon AK, Horwood NJ Nat Commun 13 (1) 7868 2022-12-22 2022-12-22
Systematic comparison of modeling fidelity levels and parameter inference settings applied to negative feedback gene regulation Coulier A, Singh P, Sturrock M, Hellander A PLoS Comput Biol 18 (12) e1010683 2022-12-15 2022-12-15
Strobealign: flexible seed size enables ultra-fast and accurate read alignment. Sahlin K Genome Biol. 23 (1) 260 2022-12-15 2022-12-15
Linking Individual Differences in Personalized Functional Network Topography to Psychopathology in Youth. Cui Z, Pines AR, Larsen B, ..., Fan Y, Satterthwaite TD Biol. Psychiatry 92 (12) 973-983 2022-12-15 2022-05-18
In Vitro Transcriptome Analysis of Cobalt Boride Nanoparticles on Human Pulmonary Alveolar Cells. Arslan ME, Tatar A, Yıldırım ÖÇ, ..., Mardinoğlu A, Türkez H Materials (Basel) 15 (23) - 2022-12-06 2022-12-06
Development of l-Dopa-containing diketopiperazines as blood-brain barrier shuttle. Cornacchia C, Marinelli L, Di Rienzo A, ..., Di Stefano A, Cacciatore I Eur J Med Chem 243 (-) 114746 2022-12-05 2022-09-08
Madagascar's extraordinary biodiversity: Threats and opportunities. Ralimanana H, Perrigo AL, Smith RJ, ..., Zizka A, Antonelli A Science (New York, N.Y.) 378 (6623) eadf1466 2022-12-02 2022-12-02
Madagascar's extraordinary biodiversity: Evolution, distribution, and use. Antonelli A, Smith RJ, Perrigo AL, ..., Zizka A, Ralimanana H Science (New York, N.Y.) 378 (6623) eabf0869 2022-12-02 2022-12-02
High-efficiency transfection of<i>Acanthamoeba castellanii</i>using a cationic polymer Moreno AB, Ek V, Eriksson J, Sellin ME, Guy L - - (-) - 2022-12-01 2022-12-01
Teasing apart the joint effect of demography and natural selection in the birth of a contact zone. Li L, Milesi P, Tiret M, ..., Wu HX, Lascoux M New Phytol. 236 (5) 1976-1987 2022-12-00 2022-09-30
Inorganic nanoparticles for oral drug delivery: opportunities, barriers, and future perspectives Asad S, Jacobsen AC, Teleki A Current Opinion in Chemical Engineering 38 (-) 100869 2022-12-00 2022-12-00
How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus. Zhang Z, Kryvokhyzha D, Orsucci M, ..., Milesi P, Lascoux M New Phytol. 236 (6) 2344-2357 2022-12-00 2022-09-30
Grey matter morphology in women with premenstrual dysphoric disorder treated with a selective progesterone receptor modulator. Kaltsouni E, Dubol M, Wikström J, ..., Sundström-Poromaa I, Comasco E Eur Neuropsychopharmacol 65 (-) 35-43 2022-12-00 2022-11-04
Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases. Nicoś M, Harbers L, Patrucco E, ..., Ambrogio C, Crosetto N JTO Clin Res Rep 3 (12) 100435 2022-12-00 2022-11-11
Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle. Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA Front Microbiol 13 (-) 1005215 2022-11-30 2022-11-30
Editorial: Application of systems biology in molecular characterization and diagnosis of cancer, Volume II. Wei Y, Zhang C, Mardinoglu A, Zhang P Front Mol Biosci 9 (-) 1089463 2022-11-25 2022-11-25
Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J - - (-) - 2022-11-24 2022-11-24
Toxicity of Glycyl-l-Prolyl-l-Glutamate Pseudotripeptides: Cytotoxic, Oxidative, Genotoxic, and Embryotoxic Perspectives. Turkez H, Ozdemir Tozlu O, Tatar A, ..., Di Stefano A, Mardinoglu A J Toxicol 2022 (-) 3775194 2022-11-19 2022-11-19
CBP-HSF2 structural and functional interplay in Rubinstein-Taybi neurodevelopmental disorder. de Thonel A, Ahlskog JK, Daupin K, ..., Sistonen L, Mezger V Nat Commun 13 (1) 7002 2022-11-16 2022-11-16
Structure of the reduced microsporidian proteasome bound by PI31-like peptides in dormant spores. Jespersen N, Ehrenbolger K, Winiger RR, ..., Vossbrinck CR, Barandun J Nat Commun 13 (1) 6962 2022-11-15 2022-11-15
Multi-foci parallelised RESOLFT nanoscopy in an extended field-of-view. Casas Moreno X, Pennacchietti F, Minet G, ..., Barabas F, Testa I J Microsc - (-) - 2022-11-14 2022-11-14
Genomic trajectories of a near-extinction event in the Chatham Island black robin. von Seth J, van der Valk T, Lord E, ..., Robertson BC, Dussex N BMC Genomics 23 (1) 747 2022-11-10 2022-11-10
Super-Resolution Microscopy Opens New Doors to Life at the Nanoscale. Fuhrmann M, Gockel N, Arizono M, ..., Testa I, Willig KI J. Neurosci. 42 (45) 8488-8497 2022-11-09 2022-11-10
FRET-FISH probes chromatin compaction at individual genomic loci in single cells. Mota A, Berezicki S, Wernersson E, ..., Crosetto N, Bienko M Nat Commun 13 (1) 6680 2022-11-05 2022-11-05
Lineage-specific targets of positive selection in three leaf beetles with different defence capacity against a parasitic wasp Yang X, Wheat C, Slotte T, Hamback P - - (-) - 2022-11-04 2022-11-04
Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D - - (-) - 2022-11-01 2022-11-01
Pregnancy induces pancreatic insulin secretion in women with long-standing type 1 diabetes. Espes D, Magnusson L, Caballero-Corbalan J, ..., Casas R, Carlsson PO BMJ Open Diabetes Res Care 10 (6) - 2022-11-00 2022-11-10
Higher risk of severe hypoglycemia in children and adolescents with a rapid loss of C-peptide during the first 6 years after type 1 diabetes diagnosis. Grönberg A, Espes D, Carlsson PO, Ludvigsson J BMJ Open Diabetes Res Care 10 (6) e002991 2022-11-00 2022-11-18
Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets. Covitz S, Tapera TM, Adebimpe A, ..., Cieslak M, Satterthwaite TD NeuroImage 263 (-) 119609 2022-11-00 2022-09-03
Chemical traits of cerebral amyloid angiopathy in familial British-, Danish-, and non-Alzheimer's dementias. Michno W, Koutarapu S, Camacho R, ..., Lashley T, Hanrieder J J. Neurochem. 163 (3) 233-246 2022-11-00 2022-09-25
Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) - assessing the dynamic associations between the microbiome and maternal and neonatal adverse events. Fransson E, Gudnadottir U, Hugerth LW, ..., Brusselaers N, Engstrand L BMJ Open 12 (10) e065825 2022-10-26 2022-10-26
Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level. Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T Curr. Biol. 32 (20) 4360-4371.e6 2022-10-24 2022-09-09
Structure-Based Discovery of Negative Allosteric Modulators of the Metabotropic Glutamate Receptor 5. Kampen S, Rodríguez D, Jørgensen M, ..., Lebon G, Carlsson J ACS chemical biology 17 (10) 2744-2752 2022-10-21 2022-09-23
Influence of the extracellular domain size on the dynamic behavior of membrane proteins. Gurdap CO, Wedemann L, Sych T, Sezgin E Biophys. J. 121 (20) 3826-3836 2022-10-18 2022-09-14
In Vitro and In Vivo Neuroprotective Effects of Sarcosine. Tanas A, Tozlu ÖÖ, Gezmiş T, ..., Mardinoğlu A, Türkez H Biomed Res Int 2022 (-) 5467498 2022-10-15 2022-10-15
Far Red-Shifted CdTe Quantum Dots for Multicolour Stimulated Emission Depletion Nanoscopy. Alvelid J, Bucci A, Testa I Chemphyschem - (-) e202200698 2022-10-14 2022-10-14
Extending fluorescence anisotropy to large complexes using reversibly switchable proteins. Volpato A, Ollech D, Alvelid J, ..., Ingaramo M, Testa I Nat. Biotechnol. - (-) - 2022-10-10 2022-10-10
DNA promoter hypermethylation of melanocyte lineage genes determines melanoma phenotype. Sanna A, Phung B, Mitra S, ..., Pietras K, Jönsson G JCI Insight 7 (19) - 2022-10-10 2022-10-10
Correlative Chemical Imaging Identifies Amyloid Peptide Signatures of Neuritic Plaques and Dystrophy in Human Sporadic Alzheimer's Disease. Koutarapu S, Ge J, Jha D, ..., Michno W, Hanrieder J Brain Connect - (-) - 2022-10-07 2022-10-07
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses. Gross SM, Dane MA, Smith RL, ..., Gray JW, Heiser LM Commun Biol 5 (1) 1066 2022-10-07 2022-10-07
Molecular programming modulates hepatic lipid metabolism and adult metabolic risk in the offspring of obese mothers in a sex-specific manner. Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M Commun Biol 5 (1) 1057 2022-10-04 2022-10-04
Probing effects of the SARS-CoV-2 E protein on membrane curvature and intracellular calcium. Mehregan A, Pérez-Conesa S, Zhuang Y, ..., Ulens C, Delemotte L Biochim Biophys Acta Biomembr 1864 (10) 183994 2022-10-01 2022-06-18
Noncoding RNAs and RNA-binding proteins: emerging governors of liver physiology and metabolic diseases. Sommerauer C, Kutter C Am. J. Physiol., Cell Physiol. 323 (4) C1003-C1017 2022-10-01 2022-08-15
Unravelling the Phylogeny of a Common Intestinal Protist: Intrageneric Diversity of Endolimax. Hocke EF, Jamy M, Burki F, Clark CG, Stensvold CR Protist 173 (5) 125908 2022-10-00 2022-09-07
The mGlu5 Receptor Protomer-Mediated Dopamine D2 Receptor Trans-Inhibition Is Dependent on the Adenosine A2A Receptor Protomer: Implications for Parkinson's Disease. Romero-Fernandez W, Taura JJ, Crans RAJ, ..., Fuxe K, Borroto-Escuela DO Mol. Neurobiol. 59 (10) 5955-5969 2022-10-00 2022-07-12
Target-enriched nanopore sequencing and de novo assembly reveals co-occurrences of complex on-target genomic rearrangements induced by CRISPR-Cas9 in human cells. Geng K, Merino LG, Wedemann L, ..., White RJ, Kutter C Genome Res 32 (10) 1876-1891 2022-10-00 2022-09-30
Spatiotemporally controlled generation of NTPs for single-molecule studies. Sabantsev A, Mao G, Aguirre Rivera J, ..., Khodorkovskiy M, Deindl S Nat. Chem. Biol. 18 (10) 1144-1151 2022-10-00 2022-09-21
Markov state modelling reveals heterogeneous drug-inhibition mechanism of Calmodulin. Westerlund AM, Sridhar A, Dahl L, ..., Bodnar AY, Delemotte L PLoS Comput Biol 18 (10) e1010583 2022-10-00 2022-10-07
Global patterns and rates of habitat transitions across the eukaryotic tree of life. Jamy M, Biwer C, Vaulot D, ..., Massana R, Burki F Nat Ecol Evol 6 (10) 1458-1470 2022-10-00 2022-08-04
Event-triggered STED imaging. Alvelid J, Damenti M, Sgattoni C, Testa I Nat. Methods 19 (10) 1268-1275 2022-10-00 2022-09-08
Elevation and plant species identity jointly shape a diverse arbuscular mycorrhizal fungal community in the High Arctic. Rasmussen PU, Abrego N, Roslin T, ..., Hugerth LW, Tack AJM New Phytol. 236 (2) 671-683 2022-10-00 2022-07-15
Chronic hyperinsulinemia promotes human hepatocyte senescence. Baboota RK, Spinelli R, Erlandsson MC, ..., Kahn CR, Smith U Mol Metab 64 (-) 101558 2022-10-00 2022-07-21
Di-n-Butyl Phthalate and Its Monoester Metabolite Impairs Steroid Hormone Biosynthesis in Human Cells: Mechanistic In Vitro Studies. Källsten L, Pierozan P, Martin JW, Karlsson O Cells 11 (19) - 2022-09-27 2022-09-27
Integrative functional analysis uncovers metabolic differences between Candida species. Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S Commun Biol 5 (1) 1013 2022-09-26 2022-09-26
Host-mycobiome metabolic interactions in health and disease. Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S Gut Microbes 14 (1) 2121576 2022-09-25 2022-09-25
EukProt: A database of genome-scale predicted proteins across the diversity of eukaryotes Richter DJ, Berney C, Strassert JFH, ..., Burki F, de Vargas C - 2 (-) - 2022-09-20 2022-09-20
TET2-mutant clonal hematopoiesis and risk of gout. Agrawal M, Niroula A, Cunin P, ..., Rao DA, Ebert BL Blood 140 (10) 1094-1103 2022-09-08 2022-06-18
Assessment of the neuroprotective potential of d-cycloserine and l-serine in aluminum chloride-induced experimental models of Alzheimer's disease: In vivo and in vitro studies. Tozlu ÖÖ, Türkez H, Okkay U, ..., Hacımüftüoğlu A, Mardinoğlu A Front Nutr 9 (-) 981889 2022-09-08 2022-09-08
Of problems and opportunities-How to treat and how to not treat crystallographic fragment screening data. Weiss MS, Wollenhaupt J, Correy GJ, ..., Thunissen M, Pearce NM Protein Sci. 31 (9) e4391 2022-09-00 2022-08-31
Microbial and human transcriptome in vaginal fluid at midgestation: Association with spontaneous preterm delivery. Wikström T, Abrahamsson S, Bengtsson-Palme J, ..., Valentin L, Hagberg H Clin Transl Med 12 (9) e1023 2022-09-00 2022-09-15
Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018-2022. Carroll LM, Matle I, Kovac J, Cheng RA, Wiedmann M Emerg Infect Dis 28 (9) 1877-1881 2022-09-00 2022-08-24
Enhanced cytotoxicity of a novel family of ATPase inhibitors in colorectal cancer cells with high NAT2 activity. Zhang X, Akcan E, Correia M, ..., Globisch D, Sjöblom T Biochem. Pharmacol. 203 (-) 115184 2022-09-00 2022-07-22
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties. Ragaller F, Andronico L, Sykora J, ..., Vattulainen I, Sezgin E Open Biol 12 (9) 220175 2022-09-00 2022-09-14
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning. Zhang C, Shi M, Kim W, ..., Boren J, Mardinoglu A EBioMedicine 83 (-) 104214 2022-09-00 2022-08-18
Analysis of Growth Phases of Enterotoxigenic Escherichia coli Reveals a Distinct Transition Phase before Entry into Early Stationary Phase with Shifts in Tryptophan, Fucose, and Putrescine Metabolism and Degradation of Neurotransmitter Precursors. Joffré E, Xiao X, Correia MSP, ..., Zhu B, Sjöling Å Microbiol Spectr 10 (4) e0175521 2022-08-31 2022-07-25
TET1 regulates gene expression and repression of endogenous retroviruses independent of DNA demethylation. Stolz P, Mantero AS, Tvardovskiy A, ..., Elsässer SJ, Bultmann S Nucleic Acids Res. 50 (15) 8491-8511 2022-08-26 2022-07-30
Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates. Zadeh CO, Huggins JR, Sarmah D, ..., Erdem C, Birtwistle MR ACS Omega 7 (33) 28912-28923 2022-08-23 2022-08-11
Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome. van der Valk T, Dehasque M, Chacón-Duque JC, ..., Díez-Del-Molino D, Dalén L iScience 25 (8) 104826 2022-08-19 2022-08-01
The origin and evolution of open habitats in North America inferred by Bayesian deep learning models. Andermann T, Strömberg CAE, Antonelli A, Silvestro D Nat Commun 13 (1) 4833 2022-08-17 2022-08-17
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity. Ambikan AT, Yang H, Krishnan S, ..., Benfeitas R, Neogi U Cell Syst 13 (8) 665-681.e4 2022-08-17 2022-07-08
Zeitotox: Toxicology and the Rhythms of Life. Xiao L, Antczak P, Rüegg J, Behrendt L Environ. Sci. Technol. 56 (16) 11100-11102 2022-08-16 2022-07-27
Microbial functional genes are driven by gradients in sediment stoichiometry, oxygen, and salinity across the Baltic benthic ecosystem. Broman E, Izabel-Shen D, Rodríguez-Gijón A, ..., Garcia SL, Nascimento FJA Microbiome 10 (1) 126 2022-08-15 2022-08-15
Local molecular and global connectomic contributions to cross-disorder cortical abnormalities. Hansen JY, Shafiei G, Vogel JW, ..., Dagher A, Misic B Nat Commun 13 (1) 4682 2022-08-10 2022-08-10
A Universal Language for Finding Mass Spectrometry Data Patterns Jarmusch AK, Aron AT, Petras D, ..., Dorrestein PC, Wang M - - (-) - 2022-08-07 2022-08-07
Ameliorative Effects by Hexagonal Boron Nitride Nanoparticles against Beta Amyloid Induced Neurotoxicity. Aydin N, Turkez H, Tozlu OO, ..., Di Stefano A, Mardinoglu A Nanomaterials (Basel) 12 (15) - 2022-08-05 2022-08-05
Adult Exposure to Di-N-Butyl Phthalate (DBP) Induces Persistent Effects on Testicular Cell Markers and Testosterone Biosynthesis in Mice. Källsten L, Almamoun R, Pierozan P, ..., Martin JW, Karlsson O Int J Mol Sci 23 (15) - 2022-08-05 2022-08-05
What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance? Birkeland S, Slotte T, Krag Brysting A, ..., Brochmann C, Nowak MD Mol. Ecol. 31 (16) 4271-4285 2022-08-00 2022-07-15
The anti-inflammatory peptide Catestatin blocks chemotaxis. Muntjewerff EM, Parv K, Mahata SK, ..., Christoffersson G, van den Bogaart G J Leukoc Biol 112 (2) 273-278 2022-08-00 2021-12-22
Recent and local diversification of Central American understorey palms Cano Á, Stauffer FW, Andermann T, ..., Perret M, Antonelli A Global Ecol. Biogeogr. 31 (8) 1513-1525 2022-08-00 2022-05-11
Photophysiological response of Symbiodiniaceae single cells to temperature stress. Xiao L, Johansson S, Rughöft S, ..., Tenje M, Behrendt L ISME J 16 (8) 2060-2064 2022-08-00 2022-04-26
Mutation accumulation opposes polymorphism: supergenes and the curious case of balanced lethals. Berdan EL, Blanckaert A, Butlin RK, ..., Slotte T, Wielstra B Philos. Trans. R. Soc. Lond., B, Biol. Sci. 377 (1856) 20210199 2022-08-00 2022-06-13
BMP4 and Gremlin 1 regulate hepatic cell senescence during clinical progression of NAFLD/NASH. Baboota RK, Rawshani A, Bonnet L, ..., Blüher M, Smith U Nat Metab 4 (8) 1007-1021 2022-08-00 2022-08-22
Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics. Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E Nature 608 (7924) E32 2022-08-00 2022-08-06
Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato. Carroll LM, Marston CK, Kolton CB, ..., Weiner ZP, Kovac J Pathogens 11 (8) - 2022-07-29 2022-07-29
Boron Compounds Exhibit Protective Effects against Aluminum-Induced Neurotoxicity and Genotoxicity: In Vitro and In Vivo Study. Turkez H, Yıldırım S, Sahin E, ..., Saruhan F, Mardinoglu A Toxics 10 (8) - 2022-07-28 2022-07-28
Boron Nitride Nanoparticles Loaded with a Boron-Based Hybrid as a Promising Drug Carrier System for Alzheimer's Disease Treatment. Yıldırım ÖÇ, Arslan ME, Öner S, ..., Mardinoglu A, Turkez H Int J Mol Sci 23 (15) - 2022-07-26 2022-07-26
Issues and recommendations for the residual approach to quantifying cognitive resilience and reserve. Elman JA, Vogel JW, Bocancea DI, ..., Kremen WS, Alzheimer’s Disease Neuroimaging Initiative Alzheimers Res Ther 14 (1) 102 2022-07-25 2022-07-25
Robust and integrative Bayesian neural networks for likelihood-free parameter inference Wrede F, Eriksson R, Jiang R, ..., Hellander A, Singh P - - (-) - 2022-07-18 2022-07-18
Genome-scale metabolic modelling of the human gut microbiome reveals changes in the glyoxylate and dicarboxylate metabolism in metabolic disorders. Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S iScience 25 (7) 104513 2022-07-15 2022-06-02
Cryo-EM structure of the human Kv3.1 channel reveals gating control by the cytoplasmic T1 domain. Chi G, Liang Q, Sridhar A, ..., Covarrubias M, Dürr KL Nat Commun 13 (1) 4087 2022-07-15 2022-07-15
An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination. Ballarino R, Bouwman BAM, Agostini F, ..., Bienko M, Crosetto N Sci Data 9 (1) 400 2022-07-12 2022-07-12
Myeloid cell-specific topoisomerase 1 inhibition using DNA origami mitigates neuroinflammation. Zhu K, Wang Y, Sarlus H, ..., Högberg B, Harris RA EMBO Rep. 23 (7) e54499 2022-07-05 2022-05-20
MRI characterization of skeletal muscle size and fatty infiltration in long-term trained and untrained individuals. Emanuelsson EB, Berry DB, Reitzner SM, ..., Sundberg CJ, Chapman MA Physiol Rep 10 (14) e15398 2022-07-00 2022-07-21
Biosynthetic potential of the global ocean microbiome. Paoli L, Ruscheweyh HJ, Forneris CC, ..., Piel J, Sunagawa S Nature 607 (7917) 111-118 2022-07-00 2022-06-22
Adenosine A2A receptor antagonists: from caffeine to selective non-xanthines. Jacobson KA, Gao ZG, Matricon P, Eddy MT, Carlsson J Br J Pharmacol 179 (14) 3496-3511 2022-07-00 2020-06-19
The healthy female microbiome across body sites: effect of hormonal contraceptives and the menstrual cycle. Krog MC, Hugerth LW, Fransson E, ..., Schuppe-Koistinen I, Nielsen HS Hum. Reprod. 37 (7) 1525-1543 2022-06-30 2022-05-14
Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter- and Intranational Surveillance and Source Tracking. Carroll LM, Pierneef R, Mathole A, Atanda A, Matle I Microbiol Spectr 10 (3) e0070022 2022-06-29 2022-04-27
HSFs drive transcription of distinct genes and enhancers during oxidative stress and heat shock. Himanen SV, Puustinen MC, Da Silva AJ, Vihervaara A, Sistonen L Nucleic Acids Res. 50 (11) 6102-6115 2022-06-24 2022-06-11
The VirF21:VirF30 protein ratio is affected by temperature and impacts Shigella flexneri host cell invasion. Skovajsová E, Colonna B, Prosseda G, Sellin ME, Di Martino ML FEMS Microbiol. Lett. 369 (1) - 2022-06-22 2022-05-07
A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling. Erdem C, Mutsuddy A, Bensman EM, ..., Feltus FA, Birtwistle MR Nat Commun 13 (1) 3555 2022-06-21 2022-06-21
T-cell trans-synaptic vesicles are distinct and carry greater effector content than constitutive extracellular vesicles. Céspedes PF, Jainarayanan A, Fernández-Messina L, ..., Sánchez-Madrid F, Dustin ML Nat Commun 13 (1) 3460 2022-06-16 2022-06-16
Differential grey matter structure in women with premenstrual dysphoric disorder: evidence from brain morphometry and data-driven classification. Dubol M, Stiernman L, Wikström J, ..., Bixo M, Comasco E Transl Psychiatry 12 (1) 250 2022-06-15 2022-06-15
GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species. Kutschera VE, Kierczak M, van der Valk T, ..., Dalén L, Díez-Del-Molino D BMC Bioinformatics 23 (1) 228 2022-06-13 2022-06-13
Incidensen av levercancer ökar över hela världen Kutter C Onkologi i Sverige - (-) - 2022-06-10 2022-06-10
FOXO1 and FOXO3 Cooperatively Regulate Innate Lymphoid Cell Development. Luu TT, Søndergaard JN, Peña-Pérez L, ..., Månsson R, Kadri N Front Immunol 13 (-) 854312 2022-06-09 2022-06-09
Erratum: Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes. Carravilla P, Dasgupta A, Zhurgenbayeva G, ..., Sezgin E, Eggeling C Biophys Rep (N Y) 2 (2) None 2022-06-08 2022-06-08
Subtype-specific responses of hKv7.4 and hKv7.5 channels to polyunsaturated fatty acids reveal an unconventional modulatory site and mechanism. Frampton DJA, Choudhury K, Nikesjö J, Delemotte L, Liin SI Elife 11 (-) - 2022-06-01 2022-06-01
The relative role of plasticity and demographic history in Capsella bursa-pastoris: a common garden experiment in Asia and Europe. Cornille A, Tiret M, Salcedo A, ..., Wright SI, Lascoux M AoB Plants 14 (3) plac011 2022-06-00 2022-04-02
The limits of human microRNA annotation have been met. Fromm B, Zhong X, Tarbier M, Friedländer MR, Hackenberg M RNA 28 (6) 781-785 2022-06-00 2022-03-02
TGFβ selects for pro-stemness over pro-invasive phenotypes during cancer cell epithelial-mesenchymal transition. Tsubakihara Y, Ohata Y, Okita Y, ..., Heldin CH, Moustakas A Mol Oncol 16 (12) 2330-2354 2022-06-00 2022-04-10
Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment. Pomerantz A, Sahlin K, Vasiljevic N, ..., Ogden R, Prost S Nat Protoc 17 (6) 1415-1443 2022-06-00 2022-04-11
Potato genomes pave the way to crop improvement. Gutiérrez-Valencia J, Slotte T Nature 606 (7914) 472-473 2022-06-00 2022-06-09
Polycomb repressive complex 2 shields naïve human pluripotent cells from trophectoderm differentiation. Kumar B, Navarro C, Winblad N, ..., Lanner F, Elsässer SJ Nat. Cell Biol. 24 (6) 845-857 2022-06-00 2022-05-30
OPUSeq simplifies detection of low-frequency DNA variants and uncovers fragmentase-associated artifacts. Alekseenko A, Wang J, Barrett D, Pelechano V NAR Genomics and Bioinformatics 4 (2) lqac048 2022-06-00 2022-06-27
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A broad, exposome-type evaluation of xenobiotic phase II biotransformation in human biofluids by LC-MS/MS Fareed Y, Braun D, Flasch M, Globisch D, Warth B - 2 (1) - 2022-03-12 2022-10-12
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Identification of electroporation sites in the complex lipid organization of the plasma membrane. Rems L, Tang X, Zhao F, ..., Testa I, Delemotte L Elife 11 (-) - 2022-02-23 2022-02-23
Stratification of the Gut Microbiota Composition Landscape across the Alzheimer's Disease Continuum in a Turkish Cohort. Yıldırım S, Nalbantoğlu ÖU, Bayraktar A, ..., Köseoğlu E, Hanoğlu L mSystems 7 (1) e0000422 2022-02-22 2022-02-08
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Genomics and adaptation in forest ecosystems. Neophytou C, Heer K, Milesi P, ..., Rellstab C, Gugerli F Tree Genet Genomes 18 (2) 12 2022-02-09 2022-02-09
Protein-lipid interaction at low pH induces oligomerization of the MakA cytotoxin from Vibrio cholerae. Nadeem A, Berg A, Pace H, ..., Uhlin BE, Wai SN Elife 11 (-) - 2022-02-08 2022-02-08
Expression Profiles of Estrogen-Regulated MicroRNAs in Cancer Cells. Archer A, Kutter C, Williams C Methods in molecular biology (Clifton, N.J.) 2418 (-) 313-343 2022-02-05 2022-02-05
ZFP207 sustains pluripotency by coordinating OCT4 stability, alternative splicing and RNA export. Malla S, Prasad Bhattarai D, Groza P, ..., Kutter C, Aguilo F EMBO Rep. 23 (3) e53191 2022-02-03 2022-01-17
Possible Functional Roles of Patellamides in the Ascidian-Prochloron Symbiosis. Baur P, Kühl M, Comba P, Behrendt L Mar Drugs 20 (2) - 2022-02-02 2022-02-02
High-Definition DIC Imaging Uncovers Transient Stages of Pathogen Infection Cycles on the Surface of Human Adult Stem Cell-Derived Intestinal Epithelium. van Rijn JM, Eriksson J, Grüttner J, ..., Svärd SG, Sellin ME MBio 13 (1) e0002222 2022-02-01 2022-02-01
ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I Elife 11 (-) - 2022-02-01 2022-02-01
Biomarker-Based Prediction of Longitudinal Tau Positron Emission Tomography in Alzheimer Disease. Leuzy A, Smith R, Cullen NC, ..., Stomrud E, Hansson O JAMA Neurol 79 (2) 149-158 2022-02-01 2021-12-21
Structural amyloid plaque polymorphism is associated with distinct lipid accumulations revealed by trapped ion mobility mass spectrometry imaging. Michno W, Wehrli PM, Koutarapu S, ..., Hopf C, Hanrieder J J. Neurochem. 160 (4) 482-498 2022-02-00 2021-12-26
Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial. Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL J Hepatol 76 (2) 332-342 2022-02-00 2021-09-24
RNA gradients: Shapers of 3D genome architecture. Bouwman BAM, Crosetto N, Bienko M Curr Opin Cell Biol 74 (-) 7-12 2022-02-00 2022-01-05
<i>IUCNN</i> – Deep learning approaches to approximate species' extinction risk Zizka A, Andermann T, Silvestro D Diversity and Distributions 28 (2) 227-241 2022-02-00 2021-12-16
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Role of Cellular Metabolism during Candida-Host Interactions. Pellon A, Begum N, Sadeghi Nasab SD, ..., Shoaie S, Moyes DL Pathogens 11 (2) - 2022-01-28 2022-01-28
Irisin-A Pancreatic Islet Hormone. Norman D, Drott CJ, Carlsson PO, Espes D Biomedicines 10 (2) - 2022-01-25 2022-01-25
Genome-wide annotation of protein-coding genes in pig. Karlsson M, Sjöstedt E, Oksvold P, ..., Luo Y, Uhlen M BMC Biol. 20 (1) 25 2022-01-25 2022-01-25
BioRssay: an R package for analyses of bioassays and probit graphs. Karunarathne P, Pocquet N, Labbé P, Milesi P Parasit Vectors 15 (1) 35 2022-01-24 2022-01-24
Association of clonal hematopoiesis with chronic obstructive pulmonary disease. Miller PG, Qiao D, Rojas-Quintero J, ..., Ebert BL, COPDGene Study Investigators, National Heart, Lung, and Blood Institute Trans-Omics for Precision Medicine Consortium Blood 139 (3) 357-368 2022-01-20 2021-12-03
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Functional dissection of inherited non-coding variation influencing multiple myeloma risk. Ajore R, Niroula A, Pertesi M, ..., Houlston R, Nilsson B Nat Commun 13 (1) 151 2022-01-10 2022-01-10
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A Genomic Perspective Across Earth's Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy. Rodríguez-Gijón A, Nuy JK, Mehrshad M, ..., Woyke T, Garcia SL Front Microbiol 12 (-) 761869 2022-01-05 2022-01-05
Effects on weight loss and glycemic control with SAR441255, a potent unimolecular peptide GLP-1/GIP/GCG receptor triagonist. Bossart M, Wagner M, Elvert R, ..., Nitsche A, Konkar A Cell Metab. 34 (1) 59-74.e10 2022-01-04 2021-12-20
An open state of a voltage-gated sodium channel involving a π-helix and conserved pore-facing asparagine. Choudhury K, Kasimova MA, McComas S, Howard RJ, Delemotte L Biophys. J. 121 (1) 11-22 2022-01-04 2021-12-08
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Improvement of the performance of anticancer peptides using a drug repositioning pipeline. Mohammadi E, Tahmoorespur M, Benfeitas R, ..., Mardinoglu A, Sekhavati MH Biotechnol J 17 (1) e2100417 2022-01-00 2021-11-14
Identification of dynamic mass-action biochemical reaction networks using sparse Bayesian methods. Jiang R, Singh P, Wrede F, Hellander A, Petzold L PLoS Comput Biol 18 (1) e1009830 2022-01-00 2022-01-31
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Enhanced Sampling Methods for Molecular Dynamics Simulations [Article v1.0] Hénin J, Lelièvre T, Shirts MR, Valsson O, Delemotte L LiveCoMS 4 (1) - 2022-00-00 2022-00-00

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