Mol Ecol Resour

ISSN	1755-0998
ISSN-L	1755-098X
IUID	6b5f3912a1d14f7796f5965f9a9ffe05
Modified	2020-11-27T13:12:56.894Z
Created	2018-12-05T08:19:45.611Z

Year 2024

PubMed DOI Crossref

A pan-genomic approach reveals novel Sulfurimonas clade in the ferruginous meromictic Lake Pavin.

Biderre-Petit C, Courtine D, Hennequin C, ..., Divne AM, Hochart C

Mol Ecol Resour 24 (3) e13923 [2024-04-00; online 2024-01-08]

Year 2023

PubMed DOI Crossref

A comprehensive framework for detecting copy number variants from single nucleotide polymorphism data: 'rCNV', a versatile r package for paralogue and CNV detection.

Karunarathne P, Zhou Q, Schliep K, Milesi P

Mol Ecol Resour 23 (8) 1772-1789 [2023-11-00; online 2023-07-29]

Pascal Milesi SciLifeLab Fellow

PubMed DOI Crossref

Origin matters: Using a local reference genome improves measures in population genomics.

Thorburn DJ, Sagonas K, Binzer-Panchal M, ..., Lenz TL, Eizaguirre C

Mol Ecol Resour 23 (7) 1706-1723 [2023-10-00; online 2023-07-25]

Year 2022

PubMed DOI Crossref

The genomic architecture of the passerine MHC region: High repeat content and contrasting evolutionary histories of single copy and tandemly duplicated MHC genes.

Westerdahl H, Mellinger S, Sigeman H, ..., Wolf JBW, Strandh M

Mol Ecol Resour 22 (6) 2379-2395 [2022-08-00; online 2022-04-11]

PubMed DOI Crossref

Short- and long-read metabarcoding of the eukaryotic rRNA operon: Evaluation of primers and comparison to shotgun metagenomics sequencing.

Latz MAC, Grujcic V, Brugel S, ..., Andersson A, Andersson AF

Mol Ecol Resour 22 (6) 2304-2318 [2022-08-00; online 2022-05-06]

Year 2021

PubMed DOI Crossref

The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic.

Nowak MD, Birkeland S, Mandáková T, ..., Lysak MA, Brochmann C

Mol Ecol Resour 21 (3) 661-676 [2021-04-00; online 2020-11-12]

SciLifeLab Fellow Tanja Slotte

PubMed DOI Crossref

Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise.

Peona V, Blom MPK, Xu L, ..., Irestedt M, Suh A

Mol Ecol Resour 21 (1) 263-286 [2021-01-00; online 2020-10-10]

Year 2020

PubMed DOI Crossref

Linked-read sequencing enables haplotype-resolved resequencing at population scale.

Lutgen D, Ritter R, Olsen RA, ..., Suh A, Burri R

Mol Ecol Resour 20 (5) 1311-1322 [2020-09-00; online 2020-06-29]

PubMed DOI Crossref

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.

van der Valk T, Vezzi F, Ormestad M, Dalén L, Guschanski K

Mol Ecol Resour 20 (5) 1171-1181 [2020-09-00; online 2019-05-05]

DDLS Fellow Tom van der Valk

PubMed DOI Crossref

Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity.

Jamy M, Foster R, Barbera P, ..., Bass D, Burki F

Mol Ecol Resour 20 (2) 429-443 [2020-03-00; online 2019-11-29]

Fabien Burki SciLifeLab Fellow

Year 2019

PubMed DOI Crossref

New mitochondrial primers for metabarcoding of insects, designed and evaluated using in silico methods.

Marquina D, Andersson AF, Ronquist F

Mol Ecol Resour 19 (1) 90-104 [2019-01-00; online 2018-10-16]

PubMed DOI Crossref

Introducing ribosomal tandem repeat barcoding for fungi.

Wurzbacher C, Larsson E, Bengtsson-Palme J, ..., Kagami M, Nilsson RH

Mol Ecol Resour 19 (1) 118-127 [2019-01-00; online 2018-10-24]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

McSwan: A joint site frequency spectrum method to detect and date selective sweeps across multiple population genomes.

Tournebize R, Poncet V, Jakobsson M, Vigouroux Y, Manel S

Mol Ecol Resour 19 (1) 283-295 [2019-01-00; online 2018-11-22]

Year 2017

PubMed DOI Crossref

Evaluating and optimizing the performance of software commonly used for the taxonomic classification of DNA metabarcoding sequence data.

Richardson RT, Bengtsson-Palme J, Johnson RM

Mol Ecol Resour 17 (4) 760-769 [2017-07-00; online 2016-11-21]

DDLS Fellow Johan Bengtsson-Palme

Year 2016

PubMed DOI Crossref

A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.

Humble E, Martinez-Barrio A, Forcada J, ..., Wolf JB, Hoffman JI

Mol Ecol Resour 16 (4) 909-921 [2016-07-00; online 2016-01-20]

Affiliated researcher

Year 2015

PubMed DOI Crossref

METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data.

Bengtsson-Palme J, Hartmann M, Eriksson KM, ..., Larsson DG, Nilsson RH

Mol Ecol Resour 15 (6) 1403-1414 [2015-11-00; online 2015-03-23]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.

Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I

Mol Ecol Resour 15 (5) 1179-1191 [2015-09-00; online 2015-02-27]

PubMed DOI Crossref

ITS1: a DNA barcode better than ITS2 in eukaryotes?

Wang XC, Liu C, Huang L, ..., Cai D, Li JQ

Mol Ecol Resour 15 (3) 573-586 [2015-05-00; online 2014-09-24]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

'True' null allele detection in microsatellite loci: a comparison of methods, assessment of difficulties and survey of possible improvements.

Dąbrowski MJ, Bornelöv S, Kruczyk M, Baltzer N, Komorowski J

Mol Ecol Resour 15 (3) 477-488 [2015-05-00; online 2014-09-26]

Year 2013

PubMed DOI Crossref

Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial.

Wolf JB

Mol Ecol Resour 13 (4) 559-572 [2013-07-00; online 2013-04-27]