Publications 2021

Title Authors Journal Published Online
Therapeutic Potential of Ferulic Acid in Alzheimer's Disease. Turkez H, Arslan ME, Barboza JN, ..., de Sousa DP, Mardinoğlu A Curr Drug Deliv 19 (8) 860-873 2021-12-30 2021-12-30
Author response: Mendelian randomization suggests a bidirectional, causal relationship between physical inactivity and adiposity Carrasquilla GD, García-Ureña M, Fall T, Sørensen TI, Kilpeläinen TO - - (-) - 2021-12-30 2021-12-30
An online atlas of human plasma metabolite signatures of gut microbiome composition Dekkers KF, Sayols-Baixeras S, Baldanzi G, ..., Orho-Melander M, Fall T - - (-) - 2021-12-30 2021-12-30
Potential of [11C]UCB-J as a PET tracer for islets of Langerhans. Puuvuori E, Rokka J, Carlsson PO, ..., Eriksson J, Eriksson O Sci Rep 11 (1) 24466 2021-12-28 2021-12-28
Regional Brain Analysis of Modified Amino Acids and Dipeptides during the Sleep/Wake Cycle. Vallianatou T, Bèchet NB, Correia MSP, Lundgaard I, Globisch D Metabolites 12 (1) - 2021-12-27 2021-12-27
Influenza A H1N1–mediated pre-existing immunity to SARS-CoV-2 predicts COVID-19 outbreak dynamics Almazán NM, Rahbar A, Carlsson M, ..., Sörensen B, Söderberg-Nauclér C - - (-) - 2021-12-25 2021-12-25
Upstream charged and hydrophobic residues impact the timing of membrane insertion of transmembrane helices Nicolaus F, Ibrahimi F, den Besten A, von Heijne G - - (-) - 2021-12-24 2021-12-24
Author Correction: The SEQC2 epigenomics quality control (EpiQC) study. Foox J, Nordlund J, Lalancette C, ..., Deng Y, Mason CE Genome Biol. 22 (1) 350 2021-12-23 2021-12-23
Amino Acid Sensing and Assimilation by the Fungal Pathogen Candida albicans in the Human Host. Silao FGS, Ljungdahl PO Pathogens 11 (1) - 2021-12-22 2021-12-22
A gene-centric approach to biomarker discovery identifies transglutaminase 1 as an epidermal autoantigen. Landegren N, Ishii N, Aranda-Guillén M, ..., Hashimoto T, Kämpe O Proc. Natl. Acad. Sci. U.S.A. 118 (51) - 2021-12-21 2021-12-17
Author response: ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the lamprey central canal Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I - - (-) - 2021-12-20 2021-12-20
Analysis of blood group antigens on MUC5AC in mucinous ovarian cancer tissues using in situ proximity ligation assay. Mateoiu C, Vitiazeva V, Kristjansdottir B, ..., Sundfeldt K, Karlsson NG Glycobiology 31 (11) 1464-1471 2021-12-18 2021-08-31
Treatment of Respiratory Distress Syndrome with Single Recombinant Polypeptides that Combine Features of SP-B and SP-C. Basabe-Burgos O, Landreh M, Rising A, Curstedt T ACS chemical biology 16 (12) 2864-2873 2021-12-17 2021-12-08
Organ-on-a-chip technology: a novel approach to investigate cardiovascular diseases. Paloschi V, Sabater-Lleal M, Middelkamp H, ..., Tenje M, Maegdefessel L Cardiovasc Res 117 (14) 2742-2754 2021-12-17 2021-03-18
Nuclear receptors: from molecular mechanisms to therapeutics. Frigo DE, Bondesson M, Williams C Essays Biochem. 65 (6) 847-856 2021-12-17 2021-11-27
Generation of RNA sequencing libraries for transcriptome analysis of globin-rich tissues of the domestic dog. Ezer S, Yoshihara M, Katayama S, ..., Krjutskov K, Kere J STAR Protoc 2 (4) 100995 2021-12-17 2021-12-12
Computational methods to study enveloped viral entry. Tuerkova A, Kasson PM Biochem. Soc. Trans. 49 (6) 2527-2537 2021-12-17 2021-11-17
Chemical Mapping Exposes the Importance of Active Site Interactions in Governing the Temperature Dependence of Enzyme Turnover. Winter SD, Jones HBL, Răsădean DM, ..., van der Kamp MW, Pudney CR ACS Catal 11 (24) 14854-14863 2021-12-17 2021-11-29
Towards a structurally resolved human protein interaction network Elofsson A, Burke D, Bryant P, ..., Kundrotas P, Beltrao P - - (-) - 2021-12-16 2021-12-16
Physical activity and sedentary behavior; mechanistic insights and role in disease prevention Hoed Md, Wang Z, Emmerich A, ..., Thomis M, Loos R - - (-) - 2021-12-16 2021-12-16
NUDT15-mediated hydrolysis limits the efficacy of anti-HCMV drug ganciclovir. Zhang SM, Rehling D, Jemth AS, ..., Stenmark P, Helleday T Cell Chem Biol 28 (12) 1693-1702.e6 2021-12-16 2021-06-29
Reply to Guo's commentary on: "Immune cells lacking Y chromosome show dysregulation of autosomal gene expression". Forsberg LA Cell. Mol. Life Sci. 79 (1) 30 2021-12-15 2021-12-15
PTEN inhibits AMPK to control collective migration Peglion F, Capuana L, Perfettini I, ..., Llense F, Etienne-Manneville S - - (-) - 2021-12-14 2021-12-14
Cell transcriptomic atlas of the non-human primate Macaca fascicularis Han L, Wei X, Liu C, ..., Esteban MA, Liu L - - (-) - 2021-12-13 2021-12-13
Accurate spliced alignment of long RNA sequencing reads Sahlin K, Mäkinen V Bioinformatics 37 (24) 4643-4651 2021-12-11 2021-07-24
Ancient DNA from a 2,700-year-old goitered gazelle ( Gazella subgutturosa ) confirms gazelle hunting in Iron Age Central Asia Rodrigues Soares AE, Boroffka N, Schröder O, ..., Benecke N, Günther T - - (-) - 2021-12-10 2021-12-10
Linked-read whole-genome sequencing resolves common and private structural variants in multiple myeloma Peña-Pérez L, Frengen N, Hauenstein J, ..., Lindstrand A, Månsson R - - (-) - 2021-12-09 2021-12-09
Genome-Wide Analyses for Osteosarcoma in Leonberger Dogs Reveal the CDKN2A/B Gene Locus as a Major Risk Locus. Letko A, Minor KM, Norton EM, ..., Mickelson JR, Drögemüller C Genes (Basel) 12 (12) - 2021-12-09 2021-12-09
Systems Biology Approaches to Decipher the Underlying Molecular Mechanisms of Glioblastoma Multiforme. Kaynar A, Altay O, Li X, ..., Shoaie S, Mardinoglu A Int J Mol Sci 22 (24) 13213 2021-12-08 2021-12-08
Pharmacological Inhibition of NOX4 Improves Mitochondrial Function and Survival in Human Beta-Cells. Elksnis A, Cen J, Wikström P, Carlsson PO, Welsh N Biomedicines 9 (12) - 2021-12-08 2021-12-08
Long-term STED imaging of membrane packing and dynamics by exchangeable polarity-sensitive dyes. Carravilla P, Dasgupta A, Zhurgenbayeva G, ..., Sezgin E, Eggeling C Biophys Rep (N Y) 1 (2) None 2021-12-08 2021-12-08
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina. Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T Mol. Biol. Evol. - (-) - 2021-12-08 2021-12-08
FRET-FISH probes chromatin compaction at individual genomic loci in single cells Mota A, Wernersson E, Li-Wang X, ..., Crosetto N, Bienko M - - (-) - 2021-12-08 2021-12-08
What Is the Role of the Environment in the Emergence of Novel Antibiotic Resistance Genes? A Modeling Approach. Bengtsson-Palme J, Jonsson V, Heß S Environ. Sci. Technol. 55 (23) 15734-15743 2021-12-07 2021-11-18
FLT3-ITD allelic ratio and HLF expression predict FLT3 inhibitor efficacy in adult AML. Kivioja J, Malani D, Kumar A, ..., Kallioniemi O, Heckman CA Sci Rep 11 (1) 23565 2021-12-07 2021-12-07
Proactive autoscaling for edge computing systems with kubernetes Ju L, Singh P, Toor S - - (-) - 2021-12-06 2022-02-07
Monitoring Drug-Target Interactions through Target Engagement-Mediated Amplification on Arrays and in situ Al-Amin R, Johansson L, Abdurakhmanov E, ..., Lundbäck T, Landegren U - - (-) - 2021-12-06 2021-12-06
Dnmt3a-mutated clonal hematopoiesis promotes osteoporosis. Kim PG, Niroula A, Shkolnik V, ..., Natarajan P, Ebert BL J. Exp. Med. 218 (12) - 2021-12-06 2021-10-26
An efficient, non-invasive approach for in-vivo sampling of hair follicles: design and applications in monitoring DNA damage and aging. Kudlova N, Slavik H, Duskova P, ..., Mistrik M, Hajduch M Aging (Albany NY) 13 (23) 25004-25024 2021-12-06 2021-12-06
What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance? Birkeland S, Slotte T, Brysting AK, ..., Brochmann C, Nowak MD - - (-) - 2021-12-05 2021-12-05
The Current State of Beta-Cell-Mass PET Imaging for Diabetes Research and Therapies. Cheung P, Eriksson O Biomedicines 9 (12) - 2021-12-03 2021-12-03
Smart3-ATAC: a highly sensitive method for joint accessibility and full-length transcriptome analysis in single cells Cheng H, Pui Hp, Lentini A, ..., Deng Q, Enge M - - (-) - 2021-12-03 2021-12-03
Advances and Utility of the Human Plasma Proteome. Deutsch EW, Omenn GS, Sun Z, ..., Moritz RL, Schwenk JM J. Proteome Res. 20 (12) 5241-5263 2021-12-03 2021-10-21
FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers. Zhao L, Xing P, Polavarapu VK, ..., Uhrbom L, Chen X Nucleic Acids Res. 49 (21) e125 2021-12-02 2021-09-18
A recurrent chromosomal inversion suffices for driving escape from oncogene-induced senescence via subTAD reorganization. Zampetidis CP, Galanos P, Angelopoulou A, ..., Papantonis A, Gorgoulis VG Mol. Cell 81 (23) 4907-4923.e8 2021-12-02 2021-11-17
Genome Stability Is in the Eye of the Beholder: CR1 Retrotransposon Activity Varies Significantly across Avian Diversity. Galbraith JD, Kortschak RD, Suh A, Adelson DL Genome Biol Evol 13 (12) - 2021-12-01 2021-12-12
Esophageal Adenocarcinoma After Antireflux Surgery in a Cohort Study From the 5 Nordic Countries. Maret-Ouda J, Santoni G, Wahlin K, ..., von Euler-Chelpin M, Lagergren J Ann Surg 274 (6) e535-e540 2021-12-01 2019-12-05
A combined genome-wide association and molecular study of age-related hearing loss in H. sapiens. Liu W, Johansson Å, Rask-Andersen H, Rask-Andersen M BMC Med 19 (1) 302 2021-12-01 2021-12-01
eIF4A3 regulates the TFEB-mediated transcriptional response via GSK3B to control autophagy. Sakellariou D, Tiberti M, Kleiber TH, ..., Papaleo E, Frankel LB Cell Death Differ. 28 (12) 3344-3356 2021-12-00 2021-06-22
Syndromic RNA polymerase II insufficiency: Generation of a human induced pluripotent stem cell line (UUIGPi002A-5) with a heterozygous disruption of POLR2A. Schuster J, de Guidi C, Fatima A, Sobol M, Dahl N Stem Cell Res 57 (-) 102577 2021-12-00 2021-10-19
Salmonella effector driven invasion of the gut epithelium: breaking in and setting the house on fire. Fattinger SA, Sellin ME, Hardt WD Curr Opin Microbiol 64 (-) 9-18 2021-12-00 2021-09-06
Protein sequence-to-structure learning: Is this the end(-to-end revolution)? Laine E, Eismann S, Elofsson A, Grudinin S Proteins 89 (12) 1770-1786 2021-12-00 2021-09-22
Pharmacological chaperones improve intra-domain stability and inter-domain assembly via distinct binding sites to rescue misfolded CFTR. Baatallah N, Elbahnsi A, Mornon JP, ..., Callebaut I, Hinzpeter A Cell. Mol. Life Sci. 78 (23) 7813-7829 2021-12-00 2021-10-29
Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms. Zhong W, Altay O, Arif M, ..., Uhlen M, Fagerberg L EBioMedicine 74 (-) 103723 2021-12-00 2021-11-27
Measurable Residual Disease Monitoring of SPAG6, ST18, PRAME, and XAGE1A Expression in Peripheral Blood May Detect Imminent Relapse in Childhood Acute Myeloid Leukemia. Skou AS, Juul-Dam KL, Hansen M, ..., Ommen HB, Hasle H J Mol Diagn 23 (12) 1787-1799 2021-12-00 2021-09-29
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro. Garcia-Alonso L, Handfield LF, Roberts K, ..., Turco MY, Vento-Tormo R Nat. Genet. 53 (12) 1698-1711 2021-12-00 2021-12-02
In vitro transcriptome response to propolis in differentiated SH-SY5Y neurons. Turkez H, Arslan ME, Yilmaz A, ..., Abd El-Aty AM, Mardinoglu A J Food Biochem 45 (12) e13990 2021-12-00 2021-11-03
In silico prediction of volume of distribution of drugs in man using conformal prediction performs on par with animal data-based models. Fagerholm U, Hellberg S, Alvarsson J, Arvidsson McShane S, Spjuth O Xenobiotica 51 (12) 1366-1371 2021-12-00 2021-12-08
Identification of histone deacetylase inhibitors with (arylidene)aminoxy scaffold active in uveal melanoma cell lines. Nencetti S, Cuffaro D, Nuti E, ..., Marshall GR, Orlandini E J Enzyme Inhib Med Chem 36 (1) 34-47 2021-12-00 2020-10-27
Identification of a novel variant in GPR56/ADGRG1 gene through whole exome sequencing in a consanguineous Pakistani family. Zulfiqar S, Tariq M, Ramzan S, ..., Abdullah U, Mahmood Baig S J Clin Neurosci 94 (-) 8-12 2021-12-00 2021-09-30
Identification of 371 genetic variants for age at first sex and birth linked to externalising behaviour. Mills MC, Tropf FC, Brazel DM, ..., Barban N, Day FR Nat Hum Behav 5 (12) 1717-1730 2021-12-00 2021-07-01
High resolution and rapid separation of bacteria from blood using elasto-inertial microfluidics. Narayana Iyengar S, Kumar T, Mårtensson G, Russom A Electrophoresis 42 (23) 2538-2551 2021-12-00 2021-09-23
Comparative genome sequencing reveals insights into the dynamics of Wolbachia in native and invasive cherry fruit flies. Wolfe TM, Bruzzese DJ, Klasson L, ..., Feder JL, Schuler H Mol. Ecol. 30 (23) 6259-6272 2021-12-00 2021-05-07
COVID-19 severity and mortality in patients with CLL: an update of the international ERIC and Campus CLL study. Chatzikonstantinou T, Kapetanakis A, Scarfò L, ..., Stamatopoulos K, Ghia P Leukemia 35 (12) 3444-3454 2021-12-00 2021-11-01
Author Correction: RecA finds homologous DNA by reduced dimensionality search. Wiktor J, Gynnå AH, Leroy P, ..., Testa I, Elf J Nature 600 (7887) E11 2021-12-00 2021-11-14
A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics. G Ribeiro P, Torres Jiménez MF, Andermann T, ..., Bacon CD, Matos-Maraví P Mol. Ecol. 30 (23) 6021-6035 2021-12-00 2021-10-31
Safety in multi-assembly via paths appearing in all path covers of a DAG. Caceres M, Mumey B, Husic E, ..., Sahlin K, Tomescu AII IEEE/ACM Trans Comput Biol Bioinform PP (-) - 2021-11-30 2021-11-30
Interleukin-35 Prevents Development of Autoimmune Diabetes Possibly by Maintaining the Phenotype of Regulatory B Cells. Luo Z, Lundin S, Mejia-Cordova M, ..., Sandler S, Singh K Int J Mol Sci 22 (23) - 2021-11-30 2021-11-30
A Detailed Gene Expression Map of Giardia Encystation. Rojas-López L, Krakovka S, Einarsson E, ..., Jerlström-Hultqvist J, Svärd SG Genes (Basel) 12 (12) - 2021-11-30 2021-11-30
Genomic and niche divergence in an Amazonian palm species complex Bacon CD, Roncal J, Andermann T, ..., Tunarosa N, Antonelli A - 197 (4) 498-512 2021-11-29 2021-05-10
Editorial: Methanotrophs: Diversity, Environmental Relevance and Applications. Cervantes FJ, Garcia SL, Peura S, Balagurusamy N Front Microbiol 12 (-) 796861 2021-11-29 2021-11-29
Biology and Treatment of High-Risk CLL: Significance of Complex Karyotype. Chatzikonstantinou T, Demosthenous C, Baliakas P Front Oncol 11 (-) 788761 2021-11-29 2021-11-29
Training algorithm matters for the performance of neural network potential: A case study of Adam and the Kalman filter optimizers. Shao Y, Dietrich FM, Nettelblad C, Zhang C J Chem Phys 155 (20) 204108 2021-11-28 2021-12-03
A panel of CSF proteins separates genetic frontotemporal dementia from presymptomatic mutation carriers: a GENFI study. Bergström S, Öijerstedt L, Remnestål J, ..., Nilsson P, Genetic Frontotemporal Dementia Initiative (GENFI) Mol Neurodegener 16 (1) 79 2021-11-27 2021-11-27
Point-of-care testing in a high-income country paediatric emergency department: a qualitative study in Sweden. Rasti R, Brännström J, Mårtensson A, ..., Alvesson HM, Alfvén T BMJ Open 11 (11) e054234 2021-11-25 2021-11-25
HSFs drive stress type-specific transcription of genes and enhancers Himanen SV, Puustinen MC, Da Silva AJ, Vihervaara A, Sistonen L - - (-) - 2021-11-23 2021-11-23
STK11 pathway in vitro validation Lehtiö J, Arslan T, Siavelis I, ..., Staaf J, Orre LM - - (-) - 2021-11-22 2021-11-22
Pinene-Based Oxidative Synthetic Toolbox for Scalable Polyester Synthesis. Stamm A, Öhlin J, Mosbech C, ..., Malmström E, Syrén PO JACS Au 1 (11) 1949-1960 2021-11-22 2021-10-08
Mass spectrometry-based proteomic analysis of NSCLC tumor and biopsy samples Lehtiö J, Arslan T, Siavelis I, ..., Staaf J, Orre LM - - (-) - 2021-11-22 2021-11-22
Immune landscape evaluation of NSCLC clinical samples Lehtiö J, Arslan T, Siavelis I, ..., Staaf J, Orre LM - - (-) - 2021-11-22 2021-11-22
Bioinformatics analysis of NSCLC multi-omics data Lehtiö J, Arslan T, Siavelis I, ..., Staaf J, Orre LM - - (-) - 2021-11-22 2021-11-22
The Influence of Domain Permutations of an Albumin-Binding Domain-Fused HER2-Targeting Affibody-Based Drug Conjugate on Tumor Cell Proliferation and Therapy Efficacy. Yin W, Xu T, Altai M, ..., Gräslund T, Orlova A Pharmaceutics 13 (11) - 2021-11-21 2021-11-21
High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue Crosetto N, Zhang N, Harbers L, ..., Marchiò C, Bienko M - - (-) - 2021-11-19 2021-11-19
Fragment-based design of selective GPCR ligands guided by free energy simulations. Matricon P, Vo DD, Gao ZG, ..., Jacobson KA, Carlsson J Chem. Commun. (Camb.) 57 (92) 12305-12308 2021-11-19 2021-11-19
FOXP3+ T cells in uterine sarcomas are associated with favorable prognosis, low extracellular matrix expression and reduced YAP activation. Gultekin O, Gonzalez-Molina J, Hardell E, ..., Lehti K, Carlson JW NPJ Precis Oncol 5 (1) 97 2021-11-19 2021-11-19
A network-based approach reveals the dysregulated transcriptional regulation in non-alcoholic fatty liver disease. Yang H, Arif M, Yuan M, ..., Zhang C, Mardinoglu A iScience 24 (11) 103222 2021-11-19 2021-10-05
Loss of nuclear DNA ligase III reverts PARP inhibitor resistance in BRCA1/53BP1 double-deficient cells by exposing ssDNA gaps. Paes Dias M, Tripathi V, van der Heijden I, ..., Ray Chaudhuri A, Jonkers J Mol. Cell 81 (22) 4692-4708.e9 2021-11-18 2021-09-22
Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae. Schön ME, Zlatogursky VV, Singh RP, ..., Wideman JG, Burki F Nat Commun 12 (1) 6651 2021-11-17 2021-11-17
NUDT18 catalyzes the hydrolysis of active metabolites of the antivirals Remdesivir, Ribavirin and Molnupiravir Jemth AS, Scaletti ER, Homan E, ..., Helleday T, Michel M - - (-) - 2021-11-17 2021-11-17
CD93 Signaling via Rho Proteins Drives Cytoskeletal Remodeling in Spreading Endothelial Cells. Barbera S, Raucci L, Lugano R, ..., Galvagni F, Orlandini M Int J Mol Sci 22 (22) - 2021-11-17 2021-11-17
Boron-based hybrids as novel scaffolds for the development of drugs with neuroprotective properties. Cacciatore I, Turkez H, Di Rienzo A, ..., Mardinoglu A, Di Stefano A RSC Med Chem 12 (11) 1944-1949 2021-11-17 2021-08-13
Using High-Sensitivity Lipidomics To Assess Microscale Heterogeneity in Oceanic Sinking Particles and Single Phytoplankton Cells. Hunter JE, Fredricks HF, Behrendt L, ..., Stocker R, Van Mooy BAS Environ. Sci. Technol. 55 (22) 15456-15465 2021-11-16 2021-11-01
Precise blood proteome profiling in an undiagnosed population with COVID-19 Fredolini C, Dodig-Crnković T, Bendes A, ..., Roxhed N, Schwenk JM - - (-) - 2021-11-16 2021-11-16
MapToCleave: High-throughput profiling of microRNA biogenesis in living cells. Kang W, Fromm B, Houben AJ, ..., Biryukova I, Friedländer MR Cell Reports 37 (7) 110015 2021-11-16 2021-11-18
Influence of the extracellular domain size on the dynamic behavior of membrane proteins Gurdap CO, Wedemann L, Sych T, Sezgin E - - (-) - 2021-11-16 2021-11-16
Engineered Human Induced Pluripotent Cells Enable Genetic Code Expansion in Brain Organoids. van Husen LS, Katsori AM, Meineke B, ..., Schedin-Weiss S, Elsässer SJ Chembiochem 22 (22) 3208-3213 2021-11-16 2021-09-13
Cover Feature: Engineered Human Induced Pluripotent Cells Enable Genetic Code Expansion in Brain Organoids (ChemBioChem 22/2021) van Husen LS, Katsori A, Meineke B, ..., Schedin‐Weiss S, Elsässer SJ Chembiochem 22 (22) 3108-3108 2021-11-16 2021-09-28
Antibacterial sulfonimidamide-based oligopeptides as type I signal peptidase inhibitors: Synthesis and biological evaluation. Benediktsdottir A, Lu L, Cao S, ..., Hughes D, Sandström A Eur J Med Chem 224 (-) 113699 2021-11-15 2021-07-13
Allosteric Effect of Nanobody Binding on Ligand-Specific Active States of the β2 Adrenergic Receptor. Chen Y, Fleetwood O, Pérez-Conesa S, Delemotte L J Chem Inf Model - (-) - 2021-11-15 2021-11-15
Glucosylceramide synthase deficiency in the heart compromises β1-adrenergic receptor trafficking. Andersson L, Cinato M, Mardani I, ..., Borén J, Levin MC Eur. Heart J. 42 (43) 4481-4492 2021-11-14 2021-07-24
A Landmark-based Common Coordinate Framework for Spatial Transcriptomics Data Andersson A, Andrusivová Ž, Czarnewski P, ..., Sundström E, Lundeberg J - - (-) - 2021-11-13 2021-11-13
Image-based high-throughput mapping of TGF-β-induced phosphocomplexes at a single-cell level. Lönn P, Al-Amin RA, Doulabi EM, ..., Kamali-Moghaddam M, Landegren U Commun Biol 4 (1) 1284 2021-11-12 2021-11-12
GutMicroNet: an interactive platform for gut microbiome interaction exploration Arif M, Portlock T, Güngör C, ..., Mardinoglu A, Shoaie S - - (-) - 2021-11-11 2021-11-11
A Genetically Encoded Picolyl Azide for Improved Live Cell Copper Click Labeling. Meineke B, Heimgärtner J, Craig AJ, ..., Moodie LWK, Elsässer SJ Front Chem 9 (-) 768535 2021-11-11 2021-11-11
Association between proton-pump inhibitors and the risk of gastric cancer: a systematic review with meta-analysis. Segna D, Brusselaers N, Glaus D, Krupka N, Misselwitz B Ther Adv Gastroenterol 14 (-) 17562848211051463 2021-11-10 2021-11-10
Annotation of pituitary neuroendocrine tumors with genome-wide expression analysis. Tebani A, Jotanovic J, Hekmati N, ..., Casar-Borota O, Pontén F Acta Neuropathol Commun 9 (1) 181 2021-11-10 2021-11-10
Towards a structurally resolved human protein interaction network Burke DF, Bryant P, Barrio-Hernandez I, ..., Beltrao P, Elofsson A - - (-) - 2021-11-09 2021-11-09
Reprogrammed transsulfuration promotes basal-like breast tumor progression via realigning cellular cysteine persulfidation. Erdélyi K, Ditrói T, Johansson HJ, ..., Lehtiö J, Nagy P Proc. Natl. Acad. Sci. U.S.A. 118 (45) - 2021-11-09 2021-11-06
Large-scale identification of RBP-RNA interactions by RAPseq refines essentials of post-transcriptional gene regulation Atanasoai I, Papavasileiou S, Preiß N, Kutter C - - (-) - 2021-11-09 2021-11-09
Rapid and sensitive detection of SARS-CoV-2 infection using quantitative peptide enrichment LC-MS analysis. Hober A, Tran-Minh KH, Foley D, ..., Engstrand L, Edfors F Elife 10 (-) - 2021-11-08 2021-11-08
NETs decorated with bioactive IL-33 infiltrate inflamed tissues and induce IFN-α production in patients with SLE. Georgakis S, Gkirtzimanaki K, Papadaki G, ..., Verginis P, Bertsias G JCI Insight 6 (21) - 2021-11-08 2021-11-08
ELIXIR and Toxicology: a community in development Martens M, Stierum R, Schymanski EL, ..., Županič A, Willighagen EL F1000Res 10 (-) 1129 2021-11-08 2021-11-08
CRISPRi as a Tool to Repress Multiple Copies of Extracellular Polymeric Substances (EPS)-Related Genes in the Cyanobacterium Synechocystis sp. PCC 6803. Santos M, Pacheco CC, Yao L, Hudson EP, Tamagnini P Life (Basel) 11 (11) - 2021-11-06 2021-11-06
pyconsFold: a fast and easy tool for modeling and docking using distance predictions. Lamb J, Elofsson A Bioinformatics 37 (21) 3959-3960 2021-11-05 2021-07-10
Specific T Cell Receptor Gene Repertoire Profiles in Subgroups of CLL Patients with Distinct Genomic Aberrations Vlachonikola E, Sofou E, Gkoliou G, ..., Baliakas P, Chatzidimitriou A Blood 138 (Supplement 1) 3749-3749 2021-11-05 2021-11-05
OpenPhi: an interface to access Philips iSyntax whole slide images for computational pathology. Mulliqi N, Kartasalo K, Olsson H, ..., Eklund M, Ruusuvuori P Bioinformatics 37 (21) 3995-3997 2021-11-05 2021-08-07
Different Prognostic Impact of Recurrent Gene Mutations in IGHV-Mutated and IGHV-Unmutated Chronic Lymphocytic Leukemia: A Retrospective, Multi-Center Cohort Study By Eric, the European Research Initiative on CLL, in Harmony Mansouri L, Thorvaldsdottir B, Sutton LA, ..., Stamatopoulos K, Rosenquist R Blood 138 (Supplement 1) 2617-2617 2021-11-05 2021-11-05
Adaptation to Chronic-Cycling Hypoxia Renders Cancer Cells Resistant to MTH1-Inhibitor Treatment Which Can Be Counteracted by Glutathione Depletion. Hansel C, Hlouschek J, Xiang K, ..., Jendrossek V, Matschke J Cells 10 (11) - 2021-11-05 2021-11-05
A Novel CD34-Specific T-Cell Engager Efficiently Depletes Stem Cells and Acute Myeloid Leukemia Cells in Vitro and In Vivo Arruda LCM, Jin L, Lambert M, ..., Carlsten M, Uhlin M Blood 138 (Supplement 1) 2861-2861 2021-11-05 2021-11-05
Testing for association with rare variants in the coding and non-coding genome: RAVA-FIRST, a new approach based on CADD deleteriousness score Bocher O, Ludwig TE, Marenne G, ..., Perdry H, Génin E - - (-) - 2021-11-04 2021-11-04
Vesicle Viewer: Online visualization and analysis of small-angle scattering from lipid vesicles. Lewis-Laurent A, Doktorova M, Heberle FA, Marquardt D Biophys. J. 120 (21) 4639-4648 2021-11-02 2021-09-24
Rolling Circle Amplification in Integrated Microsystems: An Uncut Gem toward Massively Multiplexed Pathogen Diagnostics and Genotyping. Soares RRG, Madaboosi N, Nilsson M Acc. Chem. Res. 54 (21) 3979-3990 2021-11-02 2021-10-12
Regulatory T cell differentiation is controlled by αKG-induced alterations in mitochondrial metabolism and lipid homeostasis. Matias MI, Yong CS, Foroushani A, ..., Taylor N, Dardalhon V Cell Reports 37 (5) 109911 2021-11-02 2021-11-04
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Separable Microneedle Patch to Protect and Deliver DNA Nanovaccines Against COVID-19. Yin Y, Su W, Zhang J, ..., Nie G, Wang H ACS Nano 15 (9) 14347-14359 2021-09-28 2021-09-02
Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer. Chelebian E, Avenel C, Kartasalo K, ..., Lundeberg J, Wählby C Cancers (Basel) 13 (19) - 2021-09-28 2021-09-28
Improved Radiolytic Stability of a 68Ga-labelled Collagelin Analogue for the Imaging of Fibrosis. Velikyan I, Rosenström U, Rosestedt M, Eriksson O, Antoni G Pharmaceuticals (Basel, Switzerland) 14 (10) - 2021-09-28 2021-09-28
Enhancing the Cell-Free Expression of Native Membrane Proteins by In Silico Optimization of the Coding Sequence-An Experimental Study of the Human Voltage-Dependent Anion Channel. Zayni S, Damiati S, Moreno-Flores S, ..., Jin D, Ehmoser EK Membranes (Basel) 11 (10) - 2021-09-28 2021-09-28
Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations. Huang X, Fortier AL, Coffman AJ, ..., Ragsdale AP, Gutenkunst RN Mol. Biol. Evol. 38 (10) 4588-4602 2021-09-27 2021-05-28
High prevalence of somatic PIK3CA and TP53 pathogenic variants in the normal mammary gland tissue of sporadic breast cancer patients revealed by duplex sequencing Kostecka A, Nowikiewicz T, Olszewski P, ..., Dumanski JP, Piotrowski A - - (-) - 2021-09-27 2021-09-27
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Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T - - (-) - 2021-09-03 2021-09-03
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Tertiary Lymphoid Structures in the Central Nervous System: Implications for Glioblastoma. van de Walle T, Vaccaro A, Ramachandran M, ..., Essand M, Dimberg A Front Immunol 12 (-) 724739 2021-09-01 2021-09-01
Inferring causal pathways between metabolic processes and liver fat accumulation: an IMI DIRECT study Atabaki-Pasdar N, Pomares-Millan H, Koivula RW, ..., Pearson ER, Franks PW - - (-) - 2021-09-01 2021-09-01
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Profiles of Glucose Metabolism in Different Prediabetes Phenotypes, Classified by Fasting Glycemia, 2-Hour OGTT, Glycated Hemoglobin, and 1-Hour OGTT: An IMI DIRECT Study. Tura A, Grespan E, Göbl CS, ..., Mari A, IMI DIRECT Consortium Diabetes 70 (9) 2092-2106 2021-09-00 2021-07-07
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Killing two enemies with one stone? Genomics of resistance to two sympatric pathogens in Norway spruce. Capador-Barreto HD, Bernhardsson C, Milesi P, ..., Stenlid J, Elfstrand M Mol. Ecol. 30 (18) 4433-4447 2021-09-00 2021-08-05
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Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19. Altay O, Arif M, Li X, ..., Uhlén M, Mardinoglu A Adv Sci (Weinh) 8 (17) e2101222 2021-09-00 2021-06-28
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Integrating multi-taxon palaeogenomes and sedimentary ancient DNA to study past ecosystem dynamics. Dussex N, Bergfeldt N, de Anca Prado V, ..., Dalén L, Heintzman PD Proc. Biol. Sci. 288 (1957) 20211252 2021-08-25 2021-08-25
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High definition DIC imaging uncovers transient stages of pathogen infection cycles on the surface of human adult stem cell-derived intestinal epithelium van Rijn JM, Eriksson J, Grüttner J, ..., Svärd SG, Sellin ME - - (-) - 2021-08-24 2021-08-24
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Locally Adaptive Inversions Modulate Genetic Variation at Different Geographic Scales in a Seaweed Fly. Mérot C, Berdan EL, Cayuela H, ..., Wellenreuther M, Bernatchez L Mol. Biol. Evol. 38 (9) 3953-3971 2021-08-23 2021-05-09
Polycomb Repressive Complex 2 shields naïve human pluripotent cells from trophectoderm differentiation Kumar B, Navarro C, Winblad N, ..., Lanner F, Elsässer SJ - - (-) - 2021-08-22 2021-08-22
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The ABCC4 gene is associated with pyometra in golden retriever dogs. Arendt M, Ambrosen A, Fall T, ..., Lindblad-Toh K, Hagman R Sci Rep 11 (1) 16647 2021-08-17 2021-08-17
NF1 regulates mesenchymal glioblastoma plasticity and aggressiveness through the AP-1 transcription factor FOSL1. Marques C, Unterkircher T, Kroon P, ..., Carro MS, Squatrito M Elife 10 (-) - 2021-08-17 2021-08-17
Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins Malm M, Kuo CC, Barzadd MM, ..., Hatton D, Rockberg J - - (-) - 2021-08-17 2021-08-17
Functional cross-talk between phosphorylation and disease-causing mutations in the cardiac sodium channel Nav1.5. Galleano I, Harms H, Choudhury K, ..., Delemotte L, Pless SA Proc. Natl. Acad. Sci. U.S.A. 118 (33) - 2021-08-17 2021-08-11
ExSTED microscopy reveals contrasting functions of dopamine and somatostatin CSF-c neurons along the central canal Jalalvand E, Alvelid J, Coceano G, ..., Grillner S, Testa I - - (-) - 2021-08-17 2021-08-17
Coordinating DNA Replication and Mitosis through Ubiquitin/SUMO and CDK1. Galarreta A, Valledor P, Fernandez-Capetillo O, Lecona E Int J Mol Sci 22 (16) - 2021-08-16 2021-08-16
Advances in the Relationships Between Cow's Milk Protein Allergy and Gut Microbiota in Infants. Yang Y, Li X, Yang Y, ..., Ji B, Wei Y Front Microbiol 12 (-) 716667 2021-08-16 2021-08-16
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Neutralization of VOCs including Delta one year post COVID-19 or vaccine Havervall S, Marking U, Gordon M, ..., Hober S, Thålin C - - (-) - 2021-08-12 2021-08-12
Candidatus Methylumidiphilus Drives Peaks in Methanotrophic Relative Abundance in Stratified Lakes and Ponds Across Northern Landscapes. Martin G, Rissanen AJ, Garcia SL, ..., Buck M, Peura S Front Microbiol 12 (-) 669937 2021-08-12 2021-08-12
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Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish Baranasic D, Hörtenhuber M, Balwierz P, ..., Lenhard B, Müller F - - (-) - 2021-08-09 2021-08-09
Integrated Single Cell and Spatial Transcriptomics Reveal Autoreactive Differentiated B Cells in Joints of Early Rheumatoid Arthritis Hardt U, Carlberg K, Klint Ea, ..., Ståhl PL, Malmström V - - (-) - 2021-08-09 2021-08-09
Author response: A nascent polypeptide sequence modulates DnaA translation elongation in response to nutrient availability Felletti M, Romilly C, Wagner EGH, Jonas K - - (-) - 2021-08-08 2021-08-08
Sample-to-answer COVID-19 nucleic acid testing using a low-cost centrifugal microfluidic platform with bead-based signal enhancement and smartphone read-out. Soares RRG, Akhtar AS, Pinto IF, ..., Pelechano V, Russom A Lab Chip 21 (15) 2932-2944 2021-08-07 2021-06-11
Genome assemblies of three closely related leaf beetle species (Galerucella spp.). Yang X, Slotte T, Dainat J, Hambäck PA G3 11 (8) - 2021-08-07 2021-12-02
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The Healthy Female Microbiome Across Body Sites: Effect of Hormonal Contraceptives and the Menstrual Cycle Krog MC, Hugerth LW, Fransson E, ..., Nielsen HS, Schuppe-Koistinen I - - (-) - 2021-07-14 2021-07-14
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Mendelian randomization suggests a bidirectional, causal relationship between physical inactivity and obesity Carrasquilla GD, García-Ureña M, Fall T, Sørensen TIA, Kilpeläinen TO - - (-) - 2021-06-19 2021-06-19
Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome Bacic L, Gaullier G, Sabantsev A, ..., Boulton SJ, Deindl S - - (-) - 2021-06-18 2021-06-18
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Flex Printed Circuit Board Implemented Graphene-Based DNA Sensor for Detection of SARS-CoV-2. Damiati S, Sopstad S, Peacock M, ..., Soares RRG, Russom A IEEE Sens J 21 (12) 13060-13067 2021-06-15 2021-03-24
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Prognostic implications of troponin T variations in inherited cardiomyopathies using systems biology. Shakur R, Ochoa JP, Robinson AJ, ..., Vihinen M, Monserrat L NPJ Genom Med 6 (1) 47 2021-06-14 2021-06-14
Bicyclic β-Sheet Mimetics that Target the Transcriptional Coactivator β-Catenin and Inhibit Wnt Signaling. Wendt M, Bellavita R, Gerber A, ..., Hennig S, Grossmann TN Angew. Chem. Int. Ed. Engl. 60 (25) 13937-13944 2021-06-14 2021-05-05
Newly synthesized RNA Sequencing Characterizes Transcription Dynamics in Three Pluripotent States Shao R, Kumar B, Lidschreiber K, ..., Cramer P, Elsässer SJ - - (-) - 2021-06-13 2021-06-13
Leveraging breeding programs and genomic data in Norway spruce (Picea abies L. Karst) for GWAS analysis. Chen ZQ, Zan Y, Milesi P, ..., Lascoux M, Wu HX Genome Biol. 22 (1) 179 2021-06-13 2021-06-13
Affinity Proteomics Assays for Cardiovascular and Atherosclerotic Disease Biomarkers. Iglesias MJ, Schwenk JM, Odeberg J Methods in molecular biology (Clifton, N.J.) 2344 (-) 163-179 2021-06-12 2021-06-12
Author response: NF1 regulates mesenchymal glioblastoma plasticity and aggressiveness through the AP-1 transcription factor FOSL1 Marques C, Unterkircher T, Kroon P, ..., Carro MS, Squatrito M - - (-) - 2021-06-11 2021-06-11
A Blueprint for High Affinity SARS-CoV-2 Mpro Inhibitors from Activity-Based Compound Library Screening Guided by Analysis of Protein Dynamics. Gossen J, Albani S, Hanke A, ..., Kokh DB, Rossetti G ACS pharmacology & translational science 4 (3) 1079-1095 2021-06-11 2021-03-16
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SignalP 6.0 achieves signal peptide prediction across all types using protein language models Teufel F, Armenteros JJA, Johansen AR, ..., von Heijne G, Nielsen H - - (-) - 2021-06-10 2021-06-10
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Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides Umer HM, Zhu Y, Pfeuffer J, ..., Branca R, Perez-Riverol Y - - (-) - 2021-06-09 2021-06-09
A novel immunopeptidomic-based pipeline for the generation of personalized oncolytic cancer vaccines Feola S, Chiaro J, Martins B, ..., Lehtiö J, Cerullo V - - (-) - 2021-06-09 2021-06-09
New Perspectives on the Evolution of Within-Individual Genome Variation and Germline/Soma Distinction. Suh A, Dion-Côté AM Genome Biol Evol 13 (6) - 2021-06-08 2021-05-09
Utilizing Laser Activation of Photothermal Plasmonic Nanoparticles to Induce On-Demand Drug Amorphization inside a Tablet Hempel NJ, Merkl P, Asad S, ..., Sotiriou GA, Löbmann K Mol. Pharmaceutics 18 (6) 2254-2262 2021-06-07 2021-05-05
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Limits and potential of combined folding and docking using PconsDock Pozzati G, Zhu W, Bassot C, ..., Kundrotas P, Elofsson A - - (-) - 2021-06-07 2021-06-07
Spatial cell type mapping of the oligodendrocyte lineage in the mouse juvenile and adult CNS with in situ sequencing Hilscher MM, Langseth CM, Kukanja P, ..., Nilsson M, Castelo-Branco G - - (-) - 2021-06-05 2021-06-05
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Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data Yones SA, Annett A, Stoll P, ..., Meadows JRS, Komorowski J - - (-) - 2021-06-05 2021-06-05
Rapid and Sensitive Detection of SARS-CoV-2 Infection Using Quantitative Peptide Enrichment LC-MS Analysis Hober A, Hua TMK, Foley D, ..., Engstrand L, Edfors F - - (-) - 2021-06-04 2021-06-04
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Interpretable machine learning identifies paediatric Systemic Lupus Erythematosus subtypes based on gene expression data Younes S, Annett A, Stoll P, ..., Meadows J, Komorowski J - - (-) - 2021-06-03 2021-06-03
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Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells. Erdem C, Lee AV, Taylor DL, Lezon TR PLoS Comput Biol 17 (6) e1009125 2021-06-00 2021-06-30
Human origins in Southern African palaeo-wetlands? Strong claims from weak evidence Schlebusch CM, Loog L, Groucutt HS, ..., Brierley C, Thomas MG Journal of Archaeological Science 130 (-) 105374 2021-06-00 2021-06-00
GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction. Li Z, Jiang K, Qin S, Zhong Y, Elofsson A PLoS Comput Biol 17 (6) e1009048 2021-06-00 2021-06-03
From Prehistory to Precision Medicine: Are Genetic Risk Scores Our Next Step? Reid S J Rheumatol 48 (6) 799-801 2021-06-00 2021-03-15
Following spatial Aβ aggregation dynamics in evolving Alzheimer's disease pathology by imaging stable isotope labeling kinetics. Michno W, Stringer KM, Enzlein T, ..., Edwards FA, Hanrieder J Sci Adv 7 (25) - 2021-06-00 2021-06-16
Extracellular Vesicle Capture by AnTibody of CHoice and Enzymatic Release (EV-CATCHER): A customizable purification assay designed for small-RNA biomarker identification and evaluation of circulating small-EVs. Mitchell MI, Ben-Dov IZ, Liu C, ..., Kamali-Moghaddam M, Loudig O J Extracell Vesicles 10 (8) e12110 2021-06-00 2021-06-03
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Circle-to-circle amplification coupled with microfluidic affinity chromatography enrichment for in vitro molecular diagnostics of Zika fever and analysis of anti-flaviviral drug efficacy Soares RRG, Pettke A, Robles-Remacho A, ..., Nilsson M, Madaboosi N Sensors and Actuators B: Chemical 336 (-) 129723 2021-06-00 2021-06-00
Chromogranin A regulates gut permeability via the antagonistic actions of its proteolytic peptides. Muntjewerff EM, Tang K, Lutter L, ..., van den Bogaart G, Mahata SK Acta Physiol 232 (2) e13655 2021-06-00 2021-05-06
A microfluidics-based method for culturing osteoblasts on biomimetic hydroxyapatite. Atif AR, Pujari-Palmer M, Tenje M, Mestres G Acta Biomater 127 (-) 327-337 2021-06-00 2021-03-27
Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents. Rezaei Somee M, Dastgheib SMM, Shavandi M, ..., Amoozegar MA, Mehrshad M Sci Rep 11 (1) 11316 2021-05-31 2021-05-31
Synthetic antigen-presenting cells reveal the diversity and functional specialisation of extracellular vesicles composing the fourth signal of T cell immunological synapses Céspedes PF, Jainarayanan A, Fernández-Messina L, ..., Sánchez-Madrid F, Dustin ML - - (-) - 2021-05-29 2021-05-29
Revisiting the Role of γδ T Cells in Anti-CMV Immune Response after Transplantation. Gaballa A, Alagrafi F, Uhlin M, Stikvoort A Viruses 13 (6) - 2021-05-29 2021-05-29
Achieving Efficient Fragment Screening at XChem Facility at Diamond Light Source. Douangamath A, Powell A, Fearon D, ..., Gorrie-Stone T, von Delft F J Vis Exp - (171) - 2021-05-29 2021-05-29
Using TIF-Seq2 to investigate association between 5´ and 3´mRNA ends. Li B, Marques S, Wang J, Pelechano V Meth. Enzymol. 655 (-) 85-118 2021-05-28 2021-05-28
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Perivascular Macrophages Regulate Blood Flow Following Tissue Damage. Vågesjö E, Parv K, Ahl D, ..., Christoffersson G, Phillipson M Circ. Res. 128 (11) 1694-1707 2021-05-28 2021-04-21
Multi-Parametric Field Experiment Links Explosive Activity and Persistent Degassing at Stromboli Thivet S, Harris AJL, Gurioli L, ..., Bombrun M, Marchetti E Front. Earth Sci. 9 (-) - 2021-05-28 2021-05-28
Integration of the Microbiome, Metabolome and Transcriptomics Data Identified Novel Metabolic Pathway Regulation in Colorectal Cancer. Bisht V, Nash K, Xu Y, ..., Gkoutos GV, Acharjee A Int J Mol Sci 22 (11) - 2021-05-28 2021-05-28
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Blocking Fra-1 sensitizes triple-negative breast cancer to PARP inhibitor. Song D, He H, Sinha I, ..., Zhao C, Williams C Cancer Lett. 506 (-) 23-34 2021-05-28 2021-02-27
3D genomics across the tree of life reveals condensin II as a determinant of architecture type. Hoencamp C, Dudchenko O, Elbatsh AMO, ..., Lieberman Aiden E, Rowland BD Science (New York, N.Y.) 372 (6545) 984-989 2021-05-28 2021-05-29
Small molecule inhibitors of the mitochondrial ClpXP protease possess cytostatic potential and re-sensitize chemo-resistant cancers. Meßner M, Mandl MM, Hackl MW, ..., Sieber SA, Pachmayr J Sci Rep 11 (1) 11185 2021-05-27 2021-05-27
Molecular programming in utero modulates hepatic lipid metabolism and adult metabolic risk in obese mother offspring in a sex-specific manner Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M - - (-) - 2021-05-26 2021-05-26
Diffusion and interaction dynamics of the cytosolic peroxisomal import receptor PEX5 Galiani S, Reglinski K, Carravilla P, ..., Erdmann R, Eggeling C - - (-) - 2021-05-26 2021-05-26
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N - - (-) - 2021-05-26 2021-05-26
Author response: Single-cell analysis of mosquito hemocytes identifies signatures of immune cell subtypes and cell differentiation Kwon H, Mohammed M, Franzén O, Ankarklev J, Smith RC - - (-) - 2021-05-26 2021-05-26
Phagocytosis and Efferocytosis by Resident Macrophages in the Mouse Pancreas. Parv K, Westerlund N, Merchant K, ..., Lindsay RS, Christoffersson G Front Endocrinol (Lausanne) 12 (-) 606175 2021-05-25 2021-05-25
Integrative functional analysis uncovers metabolic differences between Candida species Begum N, Lee S, Pellon A, ..., Moyes D, Shoaie S - - (-) - 2021-05-25 2021-05-25
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives. Bohutínská M, Vlček J, Yair S, ..., Slotte T, Kolář F Proc. Natl. Acad. Sci. U.S.A. 118 (21) - 2021-05-25 2021-05-19
A combined approach for single-cell mRNA and intracellular protein expression analysis. Reimegård J, Tarbier M, Danielsson M, ..., Friedländer MR, Gallant CJ Commun Biol 4 (1) 624 2021-05-25 2021-05-25
Digging into bivalve miRNAomes: between conservation and innovation. Rosani U, Bortoletto E, Bai CM, ..., Venier P, Fromm B Philos. Trans. R. Soc. Lond., B, Biol. Sci. 376 (1825) 20200165 2021-05-24 2021-04-05
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UPLC-ESI-MRM/MS for Absolute Quantification and MS/MS Structural Elucidation of Six Specialized Pyranonaphthoquinone Metabolites From Ventilago harmandiana. Limjiasahapong S, Kaewnarin K, Jariyasopit N, ..., Reutrakul V, Khoomrung S Front Plant Sci 11 (-) 602993 2021-01-11 2021-01-11
A functional connection between translation elongation and protein folding at the ribosome exit tunnel in Saccharomyces cerevisiae. Rodríguez-Galán O, García-Gómez JJ, Rosado IV, ..., Kressler D, de la Cruz J Nucleic Acids Res. 49 (1) 206-220 2021-01-11 2020-12-18
Graph-based image decoding for multiplexed in situ RNA detection Partel G, Wahlby C - - (-) 3783-3790 2021-01-10 2021-01-10
Universal and taxon-specific trends in protein sequences as a function of age. James JE, Willis SM, Nelson PG, ..., Kosinski LJ, Masel J Elife 10 (-) - 2021-01-08 2021-01-08
The spatial RNA integrity number assay for in situ evaluation of transcriptome quality. Kvastad L, Carlberg K, Larsson L, ..., Nistér M, Lundeberg J Commun Biol 4 (1) 57 2021-01-08 2021-01-08
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. RNAcentral Consortium Nucleic Acids Res. 49 (D1) D212-D220 2021-01-08 2020-10-28
Pfam: The protein families database in 2021. Mistry J, Chuguransky S, Williams L, ..., Finn RD, Bateman A Nucleic Acids Res. 49 (D1) D412-D419 2021-01-08 2020-10-31
Colistin Dependence in Extensively Drug-Resistant Acinetobacter baumannii Strain Is Associated with ISAjo2 and ISAba13 Insertions and Multiple Cellular Responses. Chamoun S, Welander J, Martis-Thiele MM, ..., Vikström E, Turkina MV Int J Mol Sci 22 (2) - 2021-01-08 2021-01-08
Bayesian genome scale modelling identifies thermal determinants of yeast metabolism. Li G, Hu Y, Luo H, ..., Ji B, Nielsen J Nat Commun 12 (1) 190 2021-01-08 2021-01-08
Agonistic CD40 antibody therapy induces tertiary lymphoid structures but impairs the response to immune checkpoint blockade in glioma van Hooren L, Vaccaro A, Ramachandran M, ..., Essand M, Dimberg A - - (-) - 2021-01-06 2021-01-06
Evolutionarily related small viral fusogens hijack distinct but modular actin nucleation pathways to drive cell-cell fusion. Chan KMC, Arthur AL, Morstein J, ..., Drubin DG, Fletcher DA Proc. Natl. Acad. Sci. U.S.A. 118 (1) - 2021-01-05 2021-01-15
Dynamic closed states of a ligand-gated ion channel captured by cryo-EM and simulations Rovšnik U, Zhuang Y, Forsberg BO, ..., Howard RJ, Lindahl E - - (-) - 2021-01-05 2021-01-05
ATP synthase hexamer assemblies shape cristae of Toxoplasma mitochondria. Mühleip A, Kock Flygaard R, Ovciarikova J, ..., Sheiner L, Amunts A Nat Commun 12 (1) 120 2021-01-05 2021-01-05
SARS-CoV-2 induces a durable and antigen specific humoral immunity after asymptomatic to mild COVID-19 infection Havervall S, Falk AJ, Klingström J, ..., Nilsson P, Thålin C - - (-) - 2021-01-04 2021-01-04
Reciprocal interactions between tumour cell populations enhance growth and reduce radiation sensitivity in prostate cancer. Paczkowski M, Kretzschmar WW, Markelc B, ..., Byrne HM, Kannan P Commun Biol 4 (1) 6 2021-01-04 2021-01-04
Obese mother offspring have hepatic lipidic modulation that contributes to sex-dependent metabolic adaptation later in life. Savva C, Helguero LA, González-Granillo M, ..., Kutter C, Korach-André M Commun Biol 4 (1) 14 2021-01-04 2021-01-04
Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis. Sahlin K, Medvedev P Nat Commun 12 (1) 2 2021-01-04 2021-01-04
CAFE: a software suite for analysis of paired-sample transposon insertion sequencing data. Abramova A, Osińska A, Kunche H, Burman E, Bengtsson-Palme J Bioinformatics - (-) - 2021-01-04 2021-01-04
Nontarget analysis reveals gut microbiome-dependent differences in the fecal PCB metabolite profiles of germ-free and conventional mice. Li X, Liu Y, Martin JW, Cui JY, Lehmler HJ Environ Pollut 268 (Pt A) 115726 2021-01-01 2020-09-25
Genomic arrays identify high-risk chronic lymphocytic leukemia with genomic complexity: a multi-center study. Leeksma AC, Baliakas P, Moysiadis T, ..., Mellink C, Kater AP Haematologica 106 (1) 87-97 2021-01-01 2021-01-01
Diversity of electron transport chains in anaerobic protists. Gawryluk RMR, Stairs CW Biochim Biophys Acta Bioenerg 1862 (1) 148334 2021-01-01 2020-11-04
Actin networks regulate the cell membrane permeability during electroporation. Muralidharan A, Rems L, Kreutzer MT, Boukany PE Biochim Biophys Acta Biomembr 1863 (1) 183468 2021-01-01 2020-08-31
Vibrio areninigrae as a pathogenic bacterium in a crustacean. Hernández-Pérez A, Söderhäll K, Sirikharin R, Jiravanichpaisal P, Söderhäll I J Invertebr Pathol 178 (-) 107517 2021-01-00 2020-12-24
Ultrasound image analysis using deep neural networks for discriminating between benign and malignant ovarian tumors: comparison with expert subjective assessment. Christiansen F, Epstein EL, Smedberg E, ..., Smith K, Epstein E Ultrasound Obstet Gynecol 57 (1) 155-163 2021-01-00 2020-11-04
The effect of Toll-like receptor stimulation on the motility of regulatory T cells. Chodaczek G, Pagni PP, Christoffersson G, ..., Wegrzyn AS, von Herrath M J. Autoimmun. 116 (-) 102563 2021-01-00 2020-11-12
TSLP as druggable target - a silver-lining for atopic diseases? Adhikary PP, Tan Z, Page BDG, Hedtrich S Pharmacol Ther 217 (-) 107648 2021-01-00 2020-08-03
Systems biology based drug repositioning for development of cancer therapy. Turanli B, Altay O, Borén J, ..., Arga KY, Mardinoglu A Semin. Cancer Biol. 68 (-) 47-58 2021-01-00 2019-09-27
Surgery of metastatic melanoma after systemic therapy - the SUMMIST trial: study protocol for a randomized controlled trial. Holmberg CJ, Katsarelias D, Jespersen H, ..., Ny L, Olofsson Bagge R Acta Oncol 60 (1) 52-55 2021-01-00 2020-11-30
Spatially resolved transcriptomics adds a new dimension to genomics. Larsson L, Frisén J, Lundeberg J Nat. Methods 18 (1) 15-18 2021-01-00 2021-01-08
Serious Transport Accidents in Tourette Syndrome or Chronic Tic Disorder. Mataix-Cols D, Brander G, Chang Z, ..., Sidorchuk A, Fernández de la Cruz L Mov Disord 36 (1) 188-195 2021-01-00 2020-09-24
Radionuclide therapy using ABD-fused ADAPT scaffold protein: Proof of Principle Garousi J, von Witting E, Borin J, ..., Tolmachev V, Hober S Biomaterials 266 (-) 120381 2021-01-00 2021-01-00
Proteomics-Informed Identification of Luminal Targets For In Situ Diagnosis of Inflammatory Bowel Disease. Asad S, Wegler C, Ahl D, ..., Artursson P, Teleki A J Pharm Sci 110 (1) 239-250 2021-01-00 2020-11-04
Profiling of donor-specific immune effector signatures in response to rituximab in a human whole blood loop assay using blood from CLL patients. Eltahir M, Fletcher E, Dynesius L, ..., Mattsson M, Mangsbo SM Int. Immunopharmacol. 90 (-) 107226 2021-01-00 2020-12-11
Predicting With Confidence: Using Conformal Prediction in Drug Discovery. Alvarsson J, Arvidsson McShane S, Norinder U, Spjuth O J Pharm Sci 110 (1) 42-49 2021-01-00 2020-10-17
Null association between serum 25-hydroxyvitamin D levels with allergic rhinitis, allergic sensitization and non-allergic rhinitis: A Mendelian randomization study. Feng Q, Bønnelykke K, Ek WE, ..., Leung RY, Cheung BM Clin. Exp. Allergy 51 (1) 78-86 2021-01-00 2020-09-28
News ways of understanding the complex biology of diabetes using PET. Eriksson O, Långström B, Antoni G Nucl. Med. Biol. 92 (-) 65-71 2021-01-00 2020-04-27
Neuroimaging the menstrual cycle: A multimodal systematic review. Dubol M, Epperson CN, Sacher J, ..., Sundström-Poromaa I, Comasco E Front Neuroendocrinol 60 (-) 100878 2021-01-00 2020-10-22
JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality. Stebbing J, Sánchez Nievas G, Falcone M, ..., Abizanda P, Lauschke VM Sci Adv 7 (1) - 2021-01-00 2021-01-01
Generation of human induced pluripotent stem cell (iPSC) lines (UUMCBi001-A, UUMCBi002-A) from two healthy donors. Vasylovska S, Schuster J, Brboric A, ..., Dahl N, Lau J Stem Cell Res 50 (-) 102114 2021-01-00 2020-12-09
Correction to: The role of physical activity in metabolic homeostasis before and after the onset of type 2 diabetes: an IMI DIRECT study. Koivula RW, Atabaki-Pasdar N, Giordano GN, ..., Franks PW, IMI DIRECT Consortium Diabetologia 64 (1) 260-261 2021-01-00 2020-11-14
Contributions of de novo variants to systemic lupus erythematosus. Almlöf JC, Nystedt S, Mechtidou A, ..., Sandling JK, Syvänen AC Eur. J. Hum. Genet. 29 (1) 184-193 2021-01-00 2020-07-28
Cancer and Risk of COVID-19 Through a General Community Survey. Lee KA, Ma W, Sikavi DR, ..., Chan AT, COPE consortium Oncologist 26 (1) e182-e185 2021-01-00 2020-09-07
Adhesion molecule cross-linking and cytokine exposure modulate IgE- and non-IgE-dependent basophil activation. Kalm F, Mansouri L, Russom A, Lundahl J, Nopp A Immunology 162 (1) 92-104 2021-01-00 2020-10-29
Proteoglycans in Stem Cells - - (-) - 2021-00-00 2021-00-00
Orthogonal Mixture of Hidden Markov Models Safinianaini N, de Souza CPE, Boström H, Lagergren J - - (-) 509-525 2021-00-00 2021-02-25
Organ-Specific Metabolic Pathways Distinguish Prediabetes, Type 2 Diabetes and Normal Tissues Diamanti K, Cavalli M, Pereira MJ, ..., Eriksson JW, Wadelius C - - (-) - 2021-00-00 2021-00-00
Network Analyses Links Epicardial Fat Metabolism to Human Coronary Heart Disease Doran S, Arif M, Clausen M, ..., Mardinoglu A, Boren J - - (-) - 2021-00-00 2021-00-00
Multiomics Personalized Network Analyses Highlight Progressive Immune Disruption of Central Metabolism Associated with COVID-19 Severity Ambikan AT, Yang H, Krishnan S, ..., Benfeitas R, Neogi U - - (-) - 2021-00-00 2021-00-00
Molecular Imaging of Diabetes Joosten L, Boss M, Jansen T, ..., de Galan B, Gotthardt M - - (-) 1415-1431 2021-00-00 2021-00-00
Mitochondrial Metabolism Drives Triacylglycerol Synthesis to Control Regulatory T Cell Differentiation Matias MI, Yong C, Foroushani A, ..., Dardalhon V, Taylor N SSRN Journal - (-) - 2021-00-00 2021-00-00
Ligand design by targeting a binding site water Matricon P, Suresh RR, Gao ZG, ..., Jacobson KA, Carlsson J Chem Sci 12 (3) 960-968 2021-00-00 2021-00-00
Investigation of the individual human sulfatome in plasma and urine samples reveals an age-dependency Correia MSP, Thapa B, Vujasinovic M, Löhr JM, Globisch D RSC Adv. 11 (55) 34788-34794 2021-00-00 2021-00-00
Heparan Sulfate in Normal and Cancer Stem Cells of the Brain Xiong A, Roy A, Spyrou A, Forsberg-Nilsson K - - (-) 205-236 2021-00-00 2021-06-08
Genome-Scale Metabolic Modelling of the Human Gut Microbiome Reveals Changes of the Glyoxylate and Dicarboxylate Metabolism in Metabolic Disorders Proffitt C, Bidkhori G, Lee S, ..., Moyes DL, Shoaie S SSRN Journal - (-) - 2021-00-00 2021-00-00
Explainable Artificial Neural Network for Recurrent Venous Thromboembolism Based on Plasma Proteomics Razzaq M, Goumidi L, Iglesias MJ, ..., Morange PE, Tregouet DA - - (-) 108-121 2021-00-00 2021-09-13
Drug Repositioning for Clear Cell Renal Cell Carcinoma Based on Stratification of Patients Li X, Kim W, Juszczak K, ..., Zhang C, Mardinoglu A - - (-) - 2021-00-00 2021-00-00
Combined Metabolic Cofactor Supplementation Reduces Liver Fat in Nonalcoholic Fatty Liver Disease Zeybel M, Altay O, Arif M, ..., Boren J, Mardinoglu A SSRN Journal - (-) - 2021-00-00 2021-00-00
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer's Disease Yulug B, Altay O, Li X, ..., Uhlen M, Mardinoglu A SSRN Journal - (-) - 2021-00-00 2021-00-00
Combined Metabolic Activators Decrease Liver Steatosis by Activating Mitochondrial Metabolism in a Golden Syrian Hamster Study Yang H, Mayneris-Perxachs J, Boqué N, ..., Mardinoglu A, Caimari A SSRN Journal - (-) - 2021-00-00 2021-00-00
Combined Metabolic Activators Decrease Liver Steatosis by Activating Mitochondrial Metabolism in a Golden Syrian Hamster Study Yang H, Mayneris-Perxachs J, Boqué N, ..., Mardinoglu A, Caimari A - - (-) - 2021-00-00 2021-00-00
B Cell Expansion Hinders the Stroma-Epithelium Regenerative Crosstalk During Mucosal Healing Frede A, Tripathi KP, Czarnewski P, ..., Saez-Rodriguez J, Villablanca EJ - - (-) - 2021-00-00 2021-00-00
Analysis of Population Structure Sjödin P, Gattepaille L, Skoglund P, Schlebusch C, Jakobsson M - - (-) 47-68 2021-00-00 2021-03-14
A Network-Based Approach Reveals the Dysregulated Transcriptional Regulation in Non- Alcohol Fatty Liver Disease Yang H, Arif M, Yuan M, ..., Zhang C, Mardinoglu A - - (-) - 2021-00-00 2021-00-00

Publications 9.5.1