Front Microbiol

Genus-wide genomic characterization of Macrococcus: insights into evolution, population structure, and functional potential.

Carroll LM, Pierneef R, Mafuna T, Magwedere K, Matle I

Front Microbiol 14 (-) 1181376 [2023-07-20; online 2023-07-20]

Year 2022

Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle.

Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA

Front Microbiol 13 (-) 1005215 [2022-11-30; online 2022-11-30]

A Genomic Perspective Across Earth's Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy.

Rodríguez-Gijón A, Nuy JK, Mehrshad M, ..., Woyke T, Garcia SL

Front Microbiol 12 (-) 761869 [2022-01-05; online 2022-01-05]

Sarahi Garcia SciLifeLab Fellow

Year 2021

Monitoring the Microevolution of Salmonella enterica in Healthy Dairy Cattle Populations at the Individual Farm Level Using Whole-Genome Sequencing.

Carroll LM, Buehler AJ, Gaballa A, ..., Cheng RA, Wiedmann M

Front Microbiol 12 (-) 763669 [2021-10-18; online 2021-10-18]

Characterization of Basal Transcriptomes Identifies Potential Metabolic and Virulence-Associated Adaptations Among Diverse Nontyphoidal Salmonella enterica Serovars.

Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA

Front Microbiol 12 (-) 730411 [2021-10-13; online 2021-10-13]

Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South Africa.

Carroll LM, Pierneef R, Mathole M, Matle I

Front Microbiol 12 (-) 748611 [2021-10-04; online 2021-10-04]

Synergies of Systems Biology and Synthetic Biology in Human Microbiome Studies.

Ezzamouri B, Shoaie S, Ledesma-Amaro R

Front Microbiol 12 (-) 681982 [2021-08-31; online 2021-08-31]

Saeed Shoaie SciLifeLab Fellow

Advances in the Relationships Between Cow's Milk Protein Allergy and Gut Microbiota in Infants.

Yang Y, Li X, Yang Y, ..., Ji B, Wei Y

Front Microbiol 12 (-) 716667 [2021-08-16; online 2021-08-16]

Saeed Shoaie SciLifeLab Fellow

Candidatus Methylumidiphilus Drives Peaks in Methanotrophic Relative Abundance in Stratified Lakes and Ponds Across Northern Landscapes.

Martin G, Rissanen AJ, Garcia SL, ..., Buck M, Peura S

Front Microbiol 12 (-) 669937 [2021-08-12; online 2021-08-12]

Sarahi Garcia SciLifeLab Fellow

DNA Blocks the Lethal Effect of Human Beta-Defensin 2 Against Neisseria meningitidis.

Wassing GM, Lidberg K, Sigurlásdóttir S, ..., Jonas K, Jonsson AB

Front Microbiol 12 (-) 697232 [2021-06-30; online 2021-06-30]

Kristina Jonas SciLifeLab Fellow

Microbial Community Interactions Are Sensitive to Small Changes in Temperature.

Burman E, Bengtsson-Palme J

Front Microbiol 12 (-) 672910 [2021-05-21; online 2021-05-21]

DDLS Fellow Johan Bengtsson-Palme

Year 2020

No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods.

Carroll LM, Cheng RA, Kovac J

Front Microbiol 11 (-) 580691 [2020-09-22; online 2020-09-22]

Year 2019

Assembly and Characterization of a Pathogen Strain Collection for Produce Safety Applications: Pre-growth Conditions Have a Larger Effect on Peroxyacetic Acid Tolerance Than Strain Diversity.

Harrand AS, Kovac J, Carroll LM, ..., Kent DJ, Wiedmann M

Front Microbiol 10 (-) 1223 [2019-05-31; online 2019-05-31]

Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges.

Carroll LM, Wiedmann M, Mukherjee M, ..., Cole JA, Kovac J

Front Microbiol 10 (-) 144 [2019-02-12; online 2019-02-12]

Year 2018

Rapid Phenotypic Antibiotic Susceptibility Testing of Uropathogens Using Optical Signal Analysis on the Nanowell Slide.

Veses-Garcia M, Antypas H, Löffler S, ..., Andersson-Svahn H, Richter-Dahlfors A

Front Microbiol 9 (-) 1530 [2018-07-10; online 2018-07-10]

Year 2017

The Intriguing Evolutionary Journey of Enteroinvasive

Pasqua M, Michelacci V, Di Martino ML, ..., Morabito S, Prosseda G

Front Microbiol 8 (-) 2390 [2017-12-05; online 2017-12-05]

Determinism and Contingency Shape Metabolic Complementation in an Endosymbiotic Consortium.

Ponce-de-Leon M, Tamarit D, Calle-Espinosa J, ..., Montero F, Pereto J

Front Microbiol 8 (-) 2290 [2017-11-22; online 2017-11-22]

Analysing Microbial Community Composition through Amplicon Sequencing: From Sampling to Hypothesis Testing.

Hugerth LW, Andersson AF

Front Microbiol 8 (-) 1561 [2017-09-04; online 2017-09-04]

Affiliated researcher DDLS Fellow Luisa Hugerth

Piecewise Structural Equation Model (SEM) Disentangles the Environmental Conditions Favoring Diatom Diazotroph Associations (DDAs) in the Western Tropical North Atlantic (WTNA).

Stenegren M, Berg C, Padilla CC, ..., Yager PL, Foster RA

Front Microbiol 8 (-) 810 [2017-05-09; online 2017-05-09]

Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life.

Wampach L, Heintz-Buschart A, Hogan A, ..., de Beaufort C, Wilmes P

Front Microbiol 8 (-) 738 [2017-05-02; online 2017-05-02]

Affiliated researcher DDLS Fellow Luisa Hugerth

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production.

Kovac J, Cummings KJ, Rodriguez-Rivera LD, ..., Thachil A, Wiedmann M

Front Microbiol 8 (-) 737 [2017-05-01; online 2017-05-01]

Seasonal Variation in Abundance and Diversity of Bacterial Methanotrophs in Five Temperate Lakes.

Samad MS, Bertilsson S

Front Microbiol 8 (-) 142 [2017-02-03; online 2017-02-03]

Year 2016

Phylogenetic Signals of Salinity and Season in Bacterial Community Composition Across the Salinity Gradient of the Baltic Sea.

Herlemann DP, Lundin D, Andersson AF, Labrenz M, Jürgens K

Front Microbiol 7 (-) 1883 [2016-11-24; online 2016-11-24]

Diversity of Pico- to Mesoplankton along the 2000 km Salinity Gradient of the Baltic Sea.

Hu YO, Karlson B, Charvet S, Andersson AF

Front Microbiol 7 (-) 679 [2016-05-12; online 2016-05-12]

Year 2015

Metagenome-Based Metabolic Reconstruction Reveals the Ecophysiological Function of Epsilonproteobacteria in a Hydrocarbon-Contaminated Sulfidic Aquifer.

Keller AH, Schleinitz KM, Starke R, ..., Vogt C, Kleinsteuber S

Front Microbiol 6 (-) 1396 [2015-12-10; online 2015-12-10]

Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.

Sanli K, Bengtsson-Palme J, Nilsson RH, ..., Blanck H, Eriksson KM

Front Microbiol 6 (-) 1192 [2015-10-30; online 2015-10-30]

DDLS Fellow Johan Bengtsson-Palme

Year 2014

Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India.

Bengtsson-Palme J, Boulund F, Fick J, Kristiansson E, Larsson DG

Front Microbiol 5 (-) 648 [2014-12-02; online 2014-12-02]

DDLS Fellow Johan Bengtsson-Palme

Winter bloom of a rare betaproteobacterium in the Arctic Ocean.

Alonso-Sáez L, Zeder M, Harding T, ..., Bertilsson S, Pedrós-Alió C

Front Microbiol 5 (-) 425 [2014-08-20; online 2014-08-20]

Trait-based approaches for understanding microbial biodiversity and ecosystem functioning.

Krause S, Le Roux X, Niklaus PA, ..., Philippot L, Bodelier PL

Front Microbiol 5 (-) 251 [2014-05-27; online 2014-05-27]

Year 2012