Ståhl PL

Hidden network preserved in Slide-tags data allows reference-free spatial reconstruction.

Dahlberg SK, Bonet DF, Franzén L, Ståhl PL, Hoffecker IT

Nat Commun 16 (1) 9652 [2025-10-31; online 2025-10-31]

Mapping spatially resolved transcriptomes in human and mouse pulmonary fibrosis.

Franzén L, Olsson Lindvall M, Hühn M, ..., Ståhl PL, Hornberg JJ

Nat. Genet. 56 (8) 1725-1736 [2024-08-00; online 2024-07-01]

Spatial transcriptomics Visium data for mouse bleomycin model of lung fibrosis

Franzén L, Lindvall MO, Hühn M, ..., Ståhl PL, Hornberg JJ

- - (-) - [2024-05-02]

Lokatt: A hybrid DNA nanopore basecaller with an explicit duration hidden Markov model and a residual LSTM network

Xu X, Bhalla N, Ståhl P, Jaldén J

- - (-) - [2022-07-14; online 2022-07-14]

Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium.

Vickovic S, Schapiro D, Carlberg K, ..., Regev A, Ståhl PL

Commun Biol 5 (1) 129 [2022-02-11; online 2022-02-11]

Sanja Vickovic SciLifeLab Fellow

Integrated Single Cell and Spatial Transcriptomics Reveal Autoreactive Differentiated B Cells in Joints of Early Rheumatoid Arthritis

Hardt U, Carlberg K, Klint Ea, ..., Ståhl PL, Malmström V

- - (-) - [2021-08-09; online 2021-08-09]

Exploring inflammatory signatures in arthritic joint biopsies with Spatial Transcriptomics.

Carlberg K, Korotkova M, Larsson L, ..., Ståhl PL, Malmström V

Sci Rep 9 (1) 18975 [2019-12-12; online 2019-12-12]

Clonally distinct differentiation trajectories shape CD8 + memory T cell heterogeneity after acute viral infections in humans

Mold JE, Modolo L, Hård J, ..., Michaëlsson J, Frisén J

- - (-) - [2019-11-07; online 2019-11-07]

High-definition spatial transcriptomics for in situ tissue profiling.

Vickovic S, Eraslan G, Salmén F, ..., Regev A, Ståhl PL

Nat. Methods 16 (10) 987-990 [2019-10-00; online 2019-09-09]

Sanja Vickovic SciLifeLab Fellow

Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors

Salmén F, Vickovic S, Larsson L, ..., Ståhl PL, Lundeberg J

- - (-) - [2018-06-29; online 2018-06-29]

Sanja Vickovic SciLifeLab Fellow