Kristoffer Sahlin

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis

Sahlin K, Sipos B, James PL, Medvedev P

Nat Commun 12 (1) - [2021-12-00; online 2021-01-04]

Year 2020

Chaining with Overlaps Revisited

Sahlin K, Mäkinen V

31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020) 161 (-) 25:1--25:12 [2020-06-09; online 2020-06-09]

De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm

Sahlin K, Medvedev P

J. Comput. Biol. 27 (4) 472-484 [2020-04-01; online 2020-04-01]

Year 2019

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies

Rangavittal S, Stopa N, Tomaszkiewicz M, ..., Makova KD, Medvedev P

BMC Genomics 20 (1) - [2019-12-00; online 2019-08-09]

Year 2018

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P

Nat Commun 9 (1) - [2018-12-00; online 2018-11-02]

Year 2017

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias.

Sahlin K, Frånberg M, Arvestad L

J. Comput. Biol. 24 (6) 581-589 [2017-06-00; online 2016-09-28]

Year 2016

Assembly scaffolding with PE-contaminated mate-pair libraries.

Sahlin K, Chikhi R, Arvestad L

pii: btw064

Bioinformatics 32 (13) 1925-1932 [2016-07-01; online 2016-03-02]

Gap Filling as Exact Path Length Problem.

Salmela L, Sahlin K, Mäkinen V, Tomescu AI

J. Comput. Biol. 23 (5) 347-361 [2016-05-00; online 2016-03-09]

Year 2014

BESST--efficient scaffolding of large fragmented assemblies.

Sahlin K, Vezzi F, Nystedt B, Lundeberg J, Arvestad L

pii: 1471-2105-15-281 pmc: PMC4262078

BMC Bioinformatics 15 (1) 281 [2014-08-15; online 2014-08-15]

Year 2013

The Norway spruce genome sequence and conifer genome evolution.

Nystedt B, Street NR, Wetterbom A, ..., Lundeberg J, Jansson S

pii: nature12211

Nature 497 (7451) 579-584 [2013-05-30; online 2013-05-22]

Year 2012

Improved gap size estimation for scaffolding algorithms.

Sahlin K, Street N, Lundeberg J, Arvestad L

pii: bts441

Bioinformatics 28 (17) 2215-2222 [2012-09-01; online 2012-08-28]