Muhammad Arif

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Primary: Shown in the list of current labels.

Year 2025

PubMed DOI Crossref
PCSK9 Regulates Cardiac Mitochondrial Cholesterol by Promoting TSPO Degradation.
Laudette M, Lindbom M, Cinato M, ..., Levin MC, Borén J
Circ. Res. 136 (9) 924-942 [2025-04-25; online 2025-04-02]
DDLS Fellow Muhammad Arif
PubMed DOI Crossref
Multi-omics characterization of improved cognitive functions in Parkinson's disease patients after the combined metabolic activator treatment: a randomized, double-blinded, placebo-controlled phase II trial.
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
Brain Commun 7 (1) fcae478 [2025-01-06; online 2025-01-06]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow

Year 2024

PubMed DOI Crossref
Retraction notice to "Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases" [Life Sci. 314 (2023) 121325].
Turkez H, Altay O, Yildirim S, ..., Uhlén M, Mardinoglu A
Life Sci 349 (-) 122712 [2024-07-15; online 2024-05-18]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Corrigendum to "Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning" [eBioMedicine, 2022;83:104214].
Zhang C, Shi M, Kim W, ..., Boren J, Mardinoglu A
EBioMedicine 105 (-) 105224 [2024-07-00; online 2024-06-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Remodeling of the human skeletal muscle proteome found after long-term endurance training but not after strength training.
Emanuelsson EB, Arif M, Reitzner SM, ..., Sundberg CJ, Chapman MA
iScience 27 (1) 108638 [2024-01-19; online 2023-12-05]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Molecular profiling of high-level athlete skeletal muscle after acute endurance or resistance exercise - A systems biology approach.
Reitzner SM, Emanuelsson EB, Arif M, ..., Chapman MA, Sundberg CJ
Mol Metab 79 (-) 101857 [2024-01-00; online 2023-12-21]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2023

PubMed DOI Crossref
Cardiomyocyte-specific PCSK9 deficiency compromises mitochondrial bioenergetics and heart function.
Laudette M, Lindbom M, Arif M, ..., Levin MC, Borén J
Cardiovasc Res 119 (7) 1537-1552 [2023-07-04; online 2023-03-08]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Molecular profiling of high-level athlete skeletal muscle after acute exercise – a systems biology approach
Reitzner SM, Emanuelsson EB, Arif M, ..., Chapman MA, Sundberg CJ
- - (-) - [2023-04-11; online 2023-04-11]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Combined metabolic activators improve metabolic functions in the animal models of neurodegenerative diseases.
Turkez H, Altay O, Yildirim S, ..., Uhlén M, Mardinoglu A
Life Sci 314 (-) 121325 [2023-02-01; online 2022-12-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined metabolic activators improve cognitive functions in Alzheimer's disease patients: a randomised, double-blinded, placebo-controlled phase-II trial.
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
Transl Neurodegener 12 (1) 4 [2023-01-26; online 2023-01-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow

Year 2022

PubMed DOI Crossref
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning.
Zhang C, Shi M, Kim W, ..., Boren J, Mardinoglu A
EBioMedicine 83 (-) 104214 [2022-09-00; online 2022-08-18]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Multi-omics personalized network analyses highlight progressive disruption of central metabolism associated with COVID-19 severity.
Ambikan AT, Yang H, Krishnan S, ..., Benfeitas R, Neogi U
Cell Syst 13 (8) 665-681.e4 [2022-08-17; online 2022-07-08]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.
Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E
Nature 608 (7924) E32 [2022-08-00; online 2022-08-06]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
MRI characterization of skeletal muscle size and fatty infiltration in long-term trained and untrained individuals.
Emanuelsson EB, Berry DB, Reitzner SM, ..., Sundberg CJ, Chapman MA
Physiol Rep 10 (14) e15398 [2022-07-00; online 2022-07-21]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Machine Learning Analysis Reveals Biomarkers for the Detection of Neurological Diseases.
Lam S, Arif M, Song X, Uhlén M, Mardinoglu A
Front Mol Neurosci 15 (-) 889728 [2022-05-31; online 2022-05-31]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Multiomics Analysis Reveals the Impact of Microbiota on Host Metabolism in Hepatic Steatosis.
Zeybel M, Arif M, Li X, ..., Borén J, Mardinoglu A
Adv Sci (Weinh) 9 (11) e2104373 [2022-04-00; online 2022-02-07]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integrative study of diet-induced mouse models of NAFLD identifies PPARα as a sexually dimorphic drug target.
Smati S, Polizzi A, Fougerat A, ..., Gourdy P, Guillou H
Gut 71 (4) 807-821 [2022-04-00; online 2021-04-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Discovery of therapeutic agents targeting PKLR for NAFLD using drug repositioning
Zhang C, Shi M, Kim W, ..., Boren J, Mardinoglu A
- - (-) - [2022-02-17; online 2022-02-17]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Machine learning analysis reveals biomarkers for the detection of neurodegenerative diseases
Lam S, Arif M, Song X, Uhlen M, Mardinoglu A
- - (-) - [2022-02-15; online 2022-02-15]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Genome-wide annotation of protein-coding genes in pig.
Karlsson M, Sjöstedt E, Oksvold P, ..., Luo Y, Uhlen M
BMC Biol. 20 (1) 25 [2022-01-25; online 2022-01-25]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2021

PubMed DOI Crossref
Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms.
Zhong W, Altay O, Arif M, ..., Uhlen M, Fagerberg L
EBioMedicine 74 (-) 103723 [2021-12-00; online 2021-11-27]
Adil Mardinoglu DDLS Fellow Fredrik Edfors Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
A network-based approach reveals the dysregulated transcriptional regulation in non-alcoholic fatty liver disease.
Yang H, Arif M, Yuan M, ..., Zhang C, Mardinoglu A
iScience 24 (11) 103222 [2021-11-19; online 2021-10-05]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Glucosylceramide synthase deficiency in the heart compromises β1-adrenergic receptor trafficking.
Andersson L, Cinato M, Mardani I, ..., Borén J, Levin MC
Eur. Heart J. 42 (43) 4481-4492 [2021-11-14; online 2021-07-24]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
GutMicroNet: an interactive platform for gut microbiome interaction exploration
Arif M, Portlock T, Güngör C, ..., Mardinoglu A, Shoaie S
- - (-) - [2021-11-11; online 2021-11-11]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Revealing the Molecular Mechanisms of Alzheimer's Disease Based on Network Analysis.
Bayraktar A, Lam S, Altay O, ..., Shoaie S, Mardinoglu A
Int J Mol Sci 22 (21) 11556 [2021-10-26; online 2021-10-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.
Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A
Mol Syst Biol 17 (10) e10459 [2021-10-00; online 2021-10-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.
Lam S, Hartmann N, Benfeitas R, ..., Knight R, Mardinoglu A
Biomedicines 9 (10) - [2021-09-24; online 2021-09-24]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Multi-omics approaches for revealing the complexity of cardiovascular disease.
Doran S, Arif M, Lam S, ..., Boren J, Mardinoglu A
Brief. Bioinformatics 22 (5) - [2021-09-02; online 2021-03-17]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Combined Metabolic Activators Accelerates Recovery in Mild-to-Moderate COVID-19.
Altay O, Arif M, Li X, ..., Uhlén M, Mardinoglu A
Adv Sci (Weinh) 8 (17) e2101222 [2021-09-00; online 2021-06-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improve Cognitive Functions without Altering Motor Scores in Parkinson’s Disease
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
- - (-) - [2021-08-04; online 2021-08-04]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
A network-based approach reveals the dysregulated transcriptional regulation in non-alcohol fatty liver disease
Yang H, Arif M, Yuan M, ..., Cheng Z, Mardinoglu A
- - (-) - [2021-07-26; online 2021-07-26]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Stratification of patients with clear cell renal cell carcinoma to facilitate drug repositioning.
Li X, Kim W, Juszczak K, ..., Zhang C, Mardinoglu A
iScience 24 (7) 102722 [2021-07-23; online 2021-06-12]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer’s Disease
Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A
- - (-) - [2021-07-20; online 2021-07-20]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
iNetModels 2.0: an interactive visualization and database of multi-omics data.
Arif M, Zhang C, Li X, ..., Uhlen M, Mardinoglu A
Nucleic Acids Res. 49 (W1) W271-W276 [2021-07-02; online 2021-04-14]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
A single-cell type transcriptomics map of human tissues.
Karlsson M, Zhang C, Méar L, ..., Uhlén M, Lindskog C
Sci Adv 7 (31) - [2021-07-00; online 2021-07-28]
Adil Mardinoglu DDLS Fellow Fredrik Edfors Muhammad Arif SciLifeLab Fellow
DOI Crossref
Next generation plasma proteome profiling of COVID-19 patients with mild to moderate symptoms
Zhong W, Altay O, Arif M, ..., Uhlén M, Fagerberg L
- - (-) - [2021-06-21; online 2021-06-21]
Adil Mardinoglu DDLS Fellow Fredrik Edfors Muhammad Arif SciLifeLab Fellow
DOI Crossref
Systems analysis reveals ageing-related perturbations in retinoids and sex hormones in Alzheimer’s and Parkinson’s diseases
Lam S, Hartmann N, Benfeitas R, ..., Knight R, Mardinoglu A
bioRxiv - (-) - [2021-06-10; online 2021-06-10]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Multi-omics analysis reveals the impact of microbiota on host metabolism in hepatic steatosis
Zeybel M, Arif M, Li X, ..., Borén J, Mardinoglu A
bioRxiv - (-) - [2021-05-23; online 2021-05-23]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Reduces Liver Fat in Nonalcoholic Fatty Liver Disease Patients
Zeybel M, Altay O, Arif M, ..., Borén J, Mardinoglu A
- - (-) - [2021-05-23; online 2021-05-23]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction.
Arif M, Klevstig M, Benfeitas R, ..., Mardinoglu A, Boren J
Elife 10 (-) - [2021-05-11; online 2021-05-11]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Author response: Integrative transcriptomic analysis of tissue-specific metabolic crosstalk after myocardial infarction
Arif M, Klevstig M, Benfeitas R, ..., Mardinoglu A, Boren J
- - (-) - [2021-04-21; online 2021-04-21]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Molecular pathways behind acquired obesity: Adipose tissue and skeletal muscle multiomics in monozygotic twin pairs discordant for BMI.
van der Kolk BW, Saari S, Lovric A, ..., Pajukanta P, Pietiläinen KH
Cell Rep Med 2 (4) 100226 [2021-04-20; online 2021-03-30]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.
Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E
Nature 590 (7847) 649-654 [2021-02-00; online 2021-02-24]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Discovery of Functional Alternatively Spliced PKM Transcripts in Human Cancers.
Li X, Kim W, Arif M, ..., Zhang C, Mardinoglu A
Cancers (Basel) 13 (2) - [2021-01-19; online 2021-01-19]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Network Analyses Links Epicardial Fat Metabolism to Human Coronary Heart Disease
Doran S, Arif M, Clausen M, ..., Mardinoglu A, Boren J
- - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Multiomics Personalized Network Analyses Highlight Progressive Immune Disruption of Central Metabolism Associated with COVID-19 Severity
Ambikan AT, Yang H, Krishnan S, ..., Benfeitas R, Neogi U
- - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Drug Repositioning for Clear Cell Renal Cell Carcinoma Based on Stratification of Patients
Li X, Kim W, Juszczak K, ..., Zhang C, Mardinoglu A
- - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Combined Metabolic Cofactor Supplementation Reduces Liver Fat in Nonalcoholic Fatty Liver Disease
Zeybel M, Altay O, Arif M, ..., Boren J, Mardinoglu A
SSRN Journal - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
Combined Metabolic Activators Improves Cognitive Functions in Alzheimer's Disease
Yulug B, Altay O, Li X, ..., Uhlen M, Mardinoglu A
SSRN Journal - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
DOI Crossref
A Network-Based Approach Reveals the Dysregulated Transcriptional Regulation in Non- Alcohol Fatty Liver Disease
Yang H, Arif M, Yuan M, ..., Zhang C, Mardinoglu A
- - (-) - [2021-00-00; online 2021-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2020

DOI Crossref
Combined Metabolic Activators accelerates recovery in mild-to-moderate COVID-19
Altay O, Arif M, Li X, ..., Uhlén M, Mardinoglu A
medRxiv - (-) - [2020-10-05; online 2020-10-05]
Adil Mardinoglu DDLS Fellow Muhammad Arif Saeed Shoaie SciLifeLab Fellow
PubMed DOI Crossref
Integration of molecular profiles in a longitudinal wellness profiling cohort.
Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L
Nat Commun 11 (1) 4487 [2020-09-08; online 2020-09-08]
Adil Mardinoglu DDLS Fellow Fredrik Edfors Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Skeletal Muscle Transcriptomic Comparison between Long-Term Trained and Untrained Men and Women.
Chapman MA, Arif M, Emanuelsson EB, ..., Mardinoglu A, Sundberg CJ
Cell Reports 31 (12) 107808 [2020-06-23; online 2020-06-25]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease.
Zhang C, Bjornson E, Arif M, ..., Borén J, Mardinoglu A
Mol Syst Biol 16 (4) e9495 [2020-04-00; online 2020-04-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Classification of clear cell renal cell carcinoma based on PKM alternative splicing.
Li X, Turanli B, Juszczak K, ..., Zhang C, Mardinoglu A
Heliyon 6 (2) e03440 [2020-02-00; online 2020-02-19]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D.
Sayitoglu EC, Georgoudaki AM, Chrobok M, ..., Sutlu T, Duru AD
Front Immunol 11 (-) 40 [2020-01-28; online 2020-01-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Discovery of Functional Alternatively Spliced <i>PKM</i> Transcripts in Human Cancers
Li X, Zhang C, Kim W, ..., Uhlen M, Mardinoglu A
- - (-) - [2020-00-00; online 2020-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2019

PubMed DOI Crossref
Cardiac expression of the microsomal triglyceride transport protein protects the heart function during ischemia.
Klevstig M, Arif M, Mannila M, ..., Ehrenborg E, Borén J
J. Mol. Cell. Cardiol. 137 (-) 1-8 [2019-12-00; online 2019-09-15]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Classification of clear cell renal cell carcinoma based on PKM alternative splicing
Li X, Turanli B, Juszczak K, ..., Zhang C, Mardinoglu A
- - (-) - [2019-11-12; online 2019-11-12]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Elucidating the Reprograming of Colorectal Cancer Metabolism Using Genome-Scale Metabolic Modeling.
Zhang C, Aldrees M, Arif M, ..., Mardinoglu A, Aziz MA
Front Oncol 9 (-) 681 [2019-07-30; online 2019-07-30]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
iNetModels 2.0: an interactive visualization and database of multi-omics data
Arif M, Zhang C, Li X, ..., Uhlen M, Mardinoglu A
bioRxiv - (-) - [2019-06-08; online 2019-06-08]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Discovery of functional alternatively spliced PKM transcripts in human cancers
Li X, Zhang C, Kim W, ..., Uhlen M, Mardinoglu A
- - (-) - [2019-04-18; online 2019-04-18]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function.
Liu Z, Zhang C, Lee S, ..., Boren J, Mardinoglu A
Metab. Eng. 52 (-) 263-272 [2019-03-00; online 2019-01-04]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Spatiotemporal dissection of the cell cycle with single-cell proteogenomics
Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan D, Lundberg E
bioRxiv - (-) - [2019-02-07; online 2019-02-07]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis.
Benfeitas R, Bidkhori G, Mukhopadhyay B, ..., Kunos G, Mardinoglu A
EBioMedicine 40 (-) 471-487 [2019-02-00; online 2018-12-31]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2018

PubMed DOI Crossref
ESS: A Tool for Genome-Scale Quantification of Essentiality Score for Reaction/Genes in Constraint-Based Modeling.
Zhang C, Bidkhori G, Benfeitas R, ..., Uhlén M, Mardinoglu A
Front. Physiol. 9 (-) 1355 [2018-09-28; online 2018-09-28]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Characterization of different fat depots in NAFLD using inflammation-associated proteome, lipidome and metabolome.
Lovric A, Granér M, Bjornson E, ..., Mardinoglu A, Boren J
Sci Rep 8 (1) 14200 [2018-09-21; online 2018-09-21]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
Metabolic Network-Based Identification and Prioritization of Anticancer Targets Based on Expression Data in Hepatocellular Carcinoma.
Bidkhori G, Benfeitas R, Elmas E, ..., Nielsen J, Mardinoglu A
Front. Physiol. 9 (-) 916 [2018-07-17; online 2018-07-17]
Adil Mardinoglu Affiliated researcher DDLS Fellow Muhammad Arif SciLifeLab Fellow
PubMed DOI Crossref
TCSBN: a database of tissue and cancer specific biological networks.
Lee S, Zhang C, Arif M, ..., Uhlen M, Mardinoglu A
Nucleic Acids Res. 46 (D1) D595-D600 [2018-01-04; online 2017-10-27]
Adil Mardinoglu Affiliated researcher DDLS Fellow Muhammad Arif SciLifeLab Fellow
DOI Crossref
Network Analysis Reveals Heterogeneous Response of Redox Metabolism in Hepatocellular Carcinoma Patients
Benfeitas R, Bidkhori G, Mukhopadhyay B, ..., Kunos G, Mardinoglu A
SSRN Journal - (-) - [2018-00-00; online 2018-00-00]
Adil Mardinoglu DDLS Fellow Muhammad Arif SciLifeLab Fellow

Year 2017

PubMed DOI Crossref
A pathology atlas of the human cancer transcriptome.
Uhlen M, Zhang C, Lee S, ..., Mardinoglu A, Ponten F
Science (New York, N.Y.) 357 (6352) eaan2507 [2017-08-18; online 2017-08-19]
Adil Mardinoglu Affiliated researcher DDLS Fellow Fredrik Edfors Muhammad Arif SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1