Martin M

Family name	Martin
Given name	Marcel
Initials	M
ORCID	ORCID 0000-0002-0680-200X
Affiliations

PubMed DOI Crossref

Precise mapping of single-stranded DNA breaks by sequence-templated erroneous DNA polymerase end-labelling.

Wenson L, Heldin J, Martin M, ..., Spjuth O, Söderberg O

Nat Commun 16 (1) 7130 [2025-08-04; online 2025-08-04]

DOI Crossref

AEMB: efficient abundance estimation for metagenomic binning

Pan S, Tolstoganov I, Sahlin K, ..., Zhao XM, Coelho LP

- - (-) - [2025-08-01; online 2025-08-01]

Kristoffer Sahlin SciLifeLab Fellow

DOI Crossref

Multi-context seeds enable fast and high-accuracy read mapping

Tolstoganov I, Martin M, Buchin N, Sahlin K

- - (-) - [2024-11-03; online 2024-11-03]

Kristoffer Sahlin SciLifeLab Fellow

PubMed DOI Crossref

Designing efficient randstrobes for sequence similarity analyses.

Karami M, Soltani Mohammadi A, Martin M, ..., Patro R, Sahlin K

Bioinformatics 40 (4) - [2024-03-29; online 2024-04-05]

Kristoffer Sahlin SciLifeLab Fellow

PubMed DOI Crossref

BLR: a flexible pipeline for haplotype analysis of multiple linked-read technologies.

Höjer P, Frick T, Siga H, ..., Martin M, Ahmadian A

Nucleic Acids Res. 51 (22) e114 [2023-12-11; online 2023-11-09]

DOI Crossref

Designing efficient randstrobes for sequence similarity analyses

Karami M, Mohammadi AS, Martin M, ..., Patro R, Sahlin K

- - (-) - [2023-10-16; online 2023-10-16]

Kristoffer Sahlin SciLifeLab Fellow

DOI Crossref

minute: A MINUTE-ChIP data analysis workflow

Navarro C, Martin M, Elsässer S

- - (-) - [2022-03-17; online 2022-03-17]

SciLifeLab Fellow Simon Elsässer

PubMed DOI Crossref

Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics.

Ratz M, von Berlin L, Larsson L, ..., Lundeberg J, Frisén J

Nat. Neurosci. 25 (3) 285-294 [2022-03-00; online 2022-02-24]

DOI Crossref

Clonally heritable gene expression imparts a layer of diversity within cell types

Mold JE, Weissman MH, Ratz M, ..., Michaëlsson J, Frisén J

- - (-) - [2022-02-16; online 2022-02-16]

DOI Crossref

Cell types and clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics

Ratz M, von Berlin L, Larsson L, ..., Lundeberg J, Frisén J

- - (-) - [2021-09-01; online 2021-09-01]

PubMed DOI Crossref

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.

Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B

F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]

PubMed DOI Crossref

De Novo Assembly of Two Swedish Genomes Reveals Missing Segments from the Human GRCh38 Reference and Improves Variant Calling of Population-Scale Sequencing Data.

Ameur A, Che H, Martin M, ..., Feuk L, Gyllensten U

Genes (Basel) 9 (10) - [2018-10-09; online 2018-10-09]

PubMed DOI Crossref

Atropos: specific, sensitive, and speedy trimming of sequencing reads.

Didion JP, Martin M, Collins FS

PeerJ 5 (-) e3720 [2017-08-30; online 2017-08-30]

DOI Crossref

Atropos: specific, sensitive, and speedy trimming of sequencing reads

Didion JP, Martin M, Collins FS

- - (-) - [2017-07-12; online 2017-07-12]

PubMed DOI Crossref

Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.

Corcoran MM, Phad GE, Vázquez Bernat N, ..., Martin M, Karlsson Hedestam GB

Nat Commun 7 (-) 13642 [2016-12-20; online 2016-12-20]

DOI Crossref

WhatsHap: fast and accurate read-based phasing

Martin M, Patterson M, Garg S, ..., Schöenhuth A, Marschall T

- - (-) - [2016-11-02; online 2016-11-02]

PubMed DOI Crossref

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.

Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L

Elife 5 (-) - [2016-05-03; online 2016-05-03]

DOI Crossref

Author response: The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L

- - (-) - [2016-01-22; online 2016-01-22]

DOI Crossref

Read-Based Phasing of Related Individuals

Garg S, Martin M, Marschall T

- - (-) - [2016-01-18; online 2016-01-18]

Martin M

19 publications