Bienko M

Family name	Bienko
Given name	Magda
Initials	M
ORCID	ORCID 0000-0002-6499-9082
Affiliations

PubMed DOI Crossref

Chromatin-associated intronic RNAs from long genes form introsomes that shape nuclear architecture in neuronal cells

Kang W, Yip WH, Li-Wang X, ..., Carninci P, Bienko M

bioRxiv - (-) - [2025-03-14; online 2025-03-14]

PubMed DOI Crossref

Author Correction: scCircle-seq unveils the diversity and complexity of extrachromosomal circular DNAs in single cells.

Chen JP, Diekmann C, Wu H, ..., Bienko M, Crosetto N

Nat Commun 15 (1) 3390 [2024-04-22; online 2024-04-22]

PubMed DOI Crossref

How Hi-C ignited the era of 3D genome biology.

Bienko M

Nat. Rev. Genet. 24 (7) 418 [2023-07-00; online 2023-02-03]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases.

Nicoś M, Harbers L, Patrucco E, ..., Ambrogio C, Crosetto N

JTO Clin Res Rep 3 (12) 100435 [2022-12-00; online 2022-11-11]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

FRET-FISH probes chromatin compaction at individual genomic loci in single cells.

Mota A, Berezicki S, Wernersson E, ..., Crosetto N, Bienko M

Nat Commun 13 (1) 6680 [2022-11-05; online 2022-11-05]

Magda Bienko SciLifeLab Fellow

DOI Crossref

Deficiency of the Heterogeneous Nuclear Ribonucleoprotein U locus leads to delayed hindbrain neurogenesis

Mastropasqua F, Oksanen M, Soldini C, ..., Bölte S, Tammimies K

- - (-) - [2022-09-17; online 2022-09-17]

DOI Crossref

Separation of transcriptional repressor and activator functions in HDAC3

Tang M, Regadas I, Belikov S, ..., Bienko M, Mannervik M

- - (-) - [2022-06-11; online 2022-06-11]

DOI Crossref

Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images

Wernersson E, Gelali E, Girelli G, ..., Crosetto N, Bienko M

- - (-) - [2022-02-02; online 2022-02-02]

DOI Crossref

FRET-FISH probes chromatin compaction at individual genomic loci in single cells

Mota A, Wernersson E, Li-Wang X, ..., Crosetto N, Bienko M

- - (-) - [2021-12-08; online 2021-12-08]

DOI Crossref

High clonal diversity and spatial genetic admixture in early prostate cancer and surrounding normal tissue

Crosetto N, Zhang N, Harbers L, ..., Marchiò C, Bienko M

- - (-) - [2021-11-19; online 2021-11-19]

DOI Crossref

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance

Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N

- - (-) - [2021-07-09; online 2021-07-09]

PubMed DOI Crossref

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.

Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N

Nat Commun 12 (1) 3903 [2021-06-23; online 2021-06-23]

Magda Bienko SciLifeLab Fellow

DOI Crossref

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance

Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N

- - (-) - [2021-05-26; online 2021-05-26]

DOI Crossref

COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance

Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N

- - (-) - [2021-01-19; online 2021-01-19]

PubMed DOI Crossref

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.

Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N

Nat Protoc 15 (12) 3894-3941 [2020-12-00; online 2020-11-02]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.

Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR

Nat Commun 11 (1) 5445 [2020-10-28; online 2020-10-28]

Magda Bienko Marc Friedländer SciLifeLab Fellow

PubMed DOI Crossref

GPSeq reveals the radial organization of chromatin in the cell nucleus.

Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M

Nat. Biotechnol. 38 (10) 1184-1193 [2020-10-00; online 2020-05-25]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.

Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N

Nat Commun 10 (1) 4732 [2019-10-18; online 2019-10-18]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.

Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M

Nat Commun 10 (1) 1636 [2019-04-09; online 2019-04-09]

Magda Bienko SciLifeLab Fellow

PubMed DOI Crossref

RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.

Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M

Commun Biol 1 (1) 209 [2018-11-28; online 2018-11-28]

Magda Bienko SciLifeLab Fellow

Bienko M

20 publications