Lagergren J

Author Correction: Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.

Shafighi S, Geras A, Jurzysta B, ..., Lagergren J, Szczurek E

Nat Commun 16 (1) 2801 [2025-03-21; online 2025-03-21]

Scuphr: A probabilistic framework for cell lineage tree reconstruction.

Koptagel H, Jun SH, Hård J, Lagergren J

PLoS Comput Biol 20 (5) e1012094 [2024-05-00; online 2024-05-09]

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Jun SH, Toosi H, Mold J, ..., Roth A, Lagergren J

Nat Commun 14 (1) 982 [2023-02-22; online 2023-02-22]

Camilla Engblom SciLifeLab Fellow

C-ToMExO: Learning Cancer Progression Dynamics from Clonal Composition of Tumors

Neyshabouri MM, Dimitrakopoulou S, Lagergren J

- - (-) - [2022-12-23; online 2022-12-23]

ToMExO: A probabilistic tree-structured model for cancer progression.

Mohaghegh Neyshabouri M, Lagergren J

PLoS Comput Biol 18 (12) e1010732 [2022-12-00; online 2022-12-05]

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue

Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J

- - (-) - [2022-11-24; online 2022-11-24]

Camilla Engblom SciLifeLab Fellow

Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues

Shafighi SD, Geras A, Jurzysta B, ..., Lagergren J, Szczurek E

- - (-) - [2022-09-23; online 2022-09-23]

Clonally heritable gene expression imparts a layer of diversity within cell types

Mold JE, Weissman MH, Ratz M, ..., Michaëlsson J, Frisén J

- - (-) - [2022-02-16; online 2022-02-16]

Inferring tumor progression in large datasets.

Mohaghegh Neyshabouri M, Jun SH, Lagergren J

PLoS Comput Biol 16 (10) e1008183 [2020-10-00; online 2020-10-09]

Species tree-aware simultaneous reconstruction of gene and domain evolution

Muhammad SA, Sennblad B, Lagergren J

- - (-) - [2018-06-02; online 2018-06-02]