F1000Res

ISSN	2046-1402
ISSN-L	2046-1402
IUID	c383e76fa38f482ba530336c9c4760f0
Modified	2020-11-27T13:12:58.806Z
Created	2020-11-04T09:43:54.864Z

Year 2025

PubMed DOI Crossref

From Recruitment to Retirement: Research Infrastructure Staff Views on the Diversification of Scientific Career Paths at Universities in Sweden in 2024.

Schroeder K, Fernández-Rodríguez J, Jenmalm-Jensen A, ..., Stadler C, Lindvall JM

F1000Res 14 (-) 652 [2025-07-04; online 2025-07-04]

Year 2024

PubMed DOI Crossref

A research data management (RDM) community for ELIXIR.

D'Anna F, Jareborg N, Jetten M, ..., Vondrasek J, Andrabi M

F1000Res 13 (-) - [2024-09-30; online 2024-09-30]

PubMed DOI Crossref

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT.

Borry M, Forsythe A, Andrades Valtueña A, ..., Warinner C, Fellows Yates JA

F1000Res 12 (-) 926 [2024-05-28; online 2024-05-28]

DOI Crossref

A research data management (RDM) community for ELIXIR

D'Anna F, Jareborg N, Jetten M, ..., Vondrasek J, Andrabi M

F1000Res 13 (-) 230 [2024-03-27; online 2024-03-27]

Year 2023

PubMed DOI Crossref

ELIXIR and Toxicology: a community in development.

Martens M, Stierum R, Schymanski EL, ..., Županič A, Willighagen EL

F1000Res 10 (-) - [2023-10-03; online 2023-10-03]

DOI Crossref

Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT

Borry M, Forsythe A, Andrades Valtueña A, ..., Warinner C, Fellows Yates JA

F1000Res 12 (-) 926 [2023-08-02; online 2023-08-02]

Year 2022

DOI Crossref

Systems Biology in ELIXIR: modelling in the spotlight

Martins dos Santos V, Anton M, Szomolay B, ..., Evelo CT, Hancock JM

F1000Res 11 (-) 1265 [2022-11-07; online 2022-11-07]

DOI Crossref

Community-driven ELIXIR activities in single-cell omics

Czarnewski P, Mahfouz A, Calogero RA, ..., Ishaque N, Korpelainen E

F1000Res 11 (-) 869 [2022-07-29; online 2022-07-29]

Year 2021

DOI Crossref

ELIXIR and Toxicology: a community in development

Martens M, Stierum R, Schymanski EL, ..., Županič A, Willighagen EL

F1000Res 10 (-) 1129 [2021-11-08; online 2021-11-08]

PubMed DOI Crossref

Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists.

Martins GG, Cordelières FP, Colombelli J, ..., Tinevez JY, Miura K

F1000Res 10 (-) 334 [2021-04-30; online 2021-04-30]

PubMed DOI Crossref

Bioimage analysis workflows: community resources to navigate through a complex ecosystem.

Paul-Gilloteaux P, Tosi S, Hériché JK, ..., Miura K, Colombelli J

F1000Res 10 (-) 320 [2021-04-26; online 2021-04-26]

DOI Crossref

Interactive biomedical segmentation tool powered by deep learning and ImJoy

Ouyang W, Le T, Xu H, Lundberg E

F1000Res 10 (-) 142 [2021-02-24; online 2021-02-24]

DDLS Fellow Wei Ouyang

Year 2020

DOI Crossref

Semi-automated analysis of dot blots using ImageJ/Fiji

Klemm AH

F1000Res 9 (-) 1385 [2020-12-01; online 2020-12-01]

DOI Crossref

COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

Auffray C, Balling R, Blomberg N, ..., Wolkenhauer O, Wouters E

F1000Res 9 (-) 1130 [2020-09-14; online 2020-09-14]

DOI Crossref

Chanjo: Clincal grade sequence coverage analysis

Andeer R, Magnusson M, Wedell A, Stranneheim H

F1000Res 9 (-) 615 [2020-06-16; online 2020-06-16]

PubMed DOI Crossref

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community).

Orengo C, Velankar S, Wodak S, ..., Salminen T, Schneider B

F1000Res 9 (-) - [2020-04-22; online 2020-04-22]

DOI Crossref

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants

Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B

F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]

PubMed DOI Crossref

Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants.

Garcia M, Juhos S, Larsson M, ..., Käller M, Nystedt B

F1000Res 9 (-) 63 [2020-01-29; online 2020-01-29]

Year 2019

PubMed DOI Crossref

An intrinsically disordered proteins community for ELIXIR.

Davey NE, Babu MM, Blackledge M, ..., Wichapong K, Tosatto SCE

F1000Res 8 (-) - [2019-10-15; online 2019-10-15]

PubMed DOI Crossref

Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers.

Shome S, Parra RG, Fatima N, ..., DeBlasio D, Rahman F

F1000Res 8 (-) - [2019-09-02; online 2019-09-02]

DOI Crossref

seqCAT: a Bioconductor R-package for variant analysis of high throughput sequencing data

Fasterius E, Al-Khalili Szigyarto C

F1000Res 7 (-) 1466 [2019-08-12; online 2019-08-12]

Year 2018

PubMed DOI Crossref

Disulfiram repurposing combined with nutritional copper supplement as add-on to chemotherapy in recurrent glioblastoma (DIRECT): Study protocol for a randomized controlled trial.

Jakola AS, Werlenius K, Mudaisi M, ..., Solheim O, Solheim T

F1000Res 7 (-) 1797 [2018-11-15; online 2018-11-15]

PubMed DOI Crossref

The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies.

Angers-Loustau A, Petrillo M, Bengtsson-Palme J, ..., Venturi V, Van den Eede G

F1000Res 7 (-) 459 [2018-04-13; online 2018-04-13]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Ten steps to get started in Genome Assembly and Annotation.

Dominguez Del Angel V, Hjerde E, Sterck L, ..., Binzer-Panchal M, Lantz H

F1000Res 7 (-) - [2018-02-05; online 2018-02-05]

Year 2017

PubMed DOI Crossref

A community proposal to integrate proteomics activities in ELIXIR.

Vizcaíno JA, Walzer M, Jiménez RC, ..., Martens L, Kohlbacher O

F1000Res 6 (-) - [2017-06-13; online 2017-06-13]

PubMed DOI Crossref

Four simple recommendations to encourage best practices in research software.

Jiménez RC, Kuzak M, Alhamdoosh M, ..., Watson-Haigh NS, Crouch S

F1000Res 6 (-) - [2017-06-13; online 2017-06-13]

PubMed DOI Crossref

MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry.

Jain M, Tyson JR, Loose M, ..., Olsen HE, MinION Analysis and Reference Consortium

F1000Res 6 (-) 760 [2017-05-31; online 2017-05-31]

PubMed DOI Crossref

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data.

Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A

F1000Res 6 (-) 664 [2017-05-10; online 2017-05-10]

DOI Crossref

TIDDIT, an efficient and comprehensive structural variant caller for massive parallel sequencing data

Eisfeldt J, Vezzi F, Olason P, Nilsson D, Lindstrand A

F1000Res 6 (-) 664 [2017-05-10; online 2017-05-10]

Year 2016

DOI Crossref

Whole genome resequencing of a laboratory-adapted Drosophila melanogaster

Gilks WP, Pennell TM, Flis I, Webster MT, Morrow EH

F1000Res 5 (-) 2644 [2016-12-20; online 2016-12-20]

PubMed DOI Crossref

Cluster Flow: A user-friendly bioinformatics workflow tool.

Ewels P, Krueger F, Käller M, Andrews S

F1000Res 5 (-) 2824 [2016-12-06; online 2016-12-06]

DOI Crossref

Cluster Flow: A user-friendly bioinformatics workflow tool

Ewels P, Krueger F, Käller M, Andrews S

F1000Res 5 (-) 2824 [2016-12-06; online 2016-12-06]

DOI Crossref

Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample

Gilks WP, Pennell TM, Flis I, Webster MT, Morrow EH

F1000Res 5 (-) 2644 [2016-11-07; online 2016-11-07]

PubMed DOI Crossref

Whole genome resequencing of a laboratory-adapted Drosophila melanogaster population sample.

Gilks WP, Pennell TM, Flis I, Webster MT, Morrow EH

F1000Res 5 (-) 2644 [2016-11-07; online 2016-11-07]

PubMed DOI Crossref

Recent advances in understanding Type 1 Diabetes.

Christoffersson G, Rodriguez-Calvo T, von Herrath M

F1000Res 5 (-) - [2016-01-27; online 2016-01-27]

Gustaf Christoffersson SciLifeLab Fellow

Year 2015

PubMed DOI Crossref

The ELIXIR channel in F1000Research.

Blomberg N, Oliveira A, Mons B, Persson B, Jonassen I

F1000Res 4 (-) - [2015-12-18; online 2015-12-18]

Year 2013

PubMed DOI Crossref

Reactive oxygen production induced by near-infrared radiation in three strains of the Chl d-containing cyanobacterium Acaryochloris marina.

Behrendt L, Staal M, Cristescu SM, ..., Larkum AW, Kühl M

F1000Res 2 (-) 44 [2013-02-13; online 2013-02-13]

Lars Behrendt SciLifeLab Fellow