Publications 2019

Title Authors Journal Published Online
A genome-wide transcriptomic analysis of protein-coding genes in human blood cells. Uhlen M, Karlsson MJ, Zhong W, ..., Fagerberg L, Brodin P Science (New York, N.Y.) 366 (6472) eaax9198 2019-12-20 2019-12-21
High genetic diversity but no geographical structure of Aedes albopictus populations in Réunion Island. Latreille AC, Milesi P, Magalon H, Mavingui P, Atyame CM Parasit Vectors 12 (1) 597 2019-12-19 2019-12-19
MPRAscore: robust and non-parametric analysis of massively parallel reporter assays. Niroula A, Ajore R, Nilsson B Bioinformatics 35 (24) 5351-5353 2019-12-15 2019-07-31
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart. Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J Cell 179 (7) 1647-1660.e19 2019-12-12 2019-12-14
InfleCS: Clustering Free Energy Landscapes with Gaussian Mixtures. Westerlund AM, Delemotte L J Chem Theory Comput 15 (12) 6752-6759 2019-12-10 2019-11-07
Overeating Saturated Fat Promotes Fatty Liver and Ceramides Compared With Polyunsaturated Fat: A Randomized Trial. Rosqvist F, Kullberg J, Ståhlman M, ..., Ahlström H, Risérus U J. Clin. Endocrinol. Metab. 104 (12) 6207-6219 2019-12-01 2019-08-02
Nascent RNA analyses: tracking transcription and its regulation. Wissink EM, Vihervaara A, Tippens ND, Lis JT Nat. Rev. Genet. 20 (12) 705-723 2019-12-00 2019-08-09
Fluorescence microscopy at the molecular scale Alvelid J, Testa I Current Opinion in Biomedical Engineering 12 (-) 34-42 2019-12-00 2019-12-00
Enrichment of oral microbiota in early cystic precursors to invasive pancreatic cancer. Gaiser RA, Halimi A, Alkharaan H, ..., Del Chiaro M, Sällberg Chen M Gut 68 (12) 2186-2194 2019-12-00 2019-03-14
Chromatin-sensitive cryptic promoters putatively drive expression of alternative protein isoforms in yeast. Wei W, Hennig BP, Wang J, ..., Steinmetz LM, Pelechano V Genome Res 29 (12) 1974-1984 2019-12-00 2019-11-18
Cardiac expression of the microsomal triglyceride transport protein protects the heart function during ischemia. Klevstig M, Arif M, Mannila M, ..., Ehrenborg E, Borén J J. Mol. Cell. Cardiol. 137 (-) 1-8 2019-12-00 2019-09-15
Assessing the potential for assisted gene flow using past introduction of Norway spruce in southern Sweden: Local adaptation and genetic basis of quantitative traits in trees. Milesi P, Berlin M, Chen J, ..., Karlsson B, Lascoux M Evol Appl 12 (10) 1946-1959 2019-12-00 2019-08-22
Helix breaking transition in the S4 of HCN channel is critical for hyperpolarization-dependent gating. Kasimova MA, Tewari D, Cowgill JB, ..., Delemotte L, Chanda B Elife 8 (-) - 2019-11-27 2019-11-27
The human secretome. Uhlén M, Karlsson MJ, Hober A, ..., Fagerberg L, Sivertsson Å Sci Signal 12 (609) eaaz0274 2019-11-26 2019-11-26
Evolutionary Refinement of DNA Nanostructures Using Coarse-Grained Molecular Dynamics Simulations. Benson E, Lolaico M, Tarasov Y, Gådin A, Högberg B ACS Nano 13 (11) 12591-12598 2019-11-26 2019-10-15
Effects of sampling strategy and DNA extraction on human skin microbiome investigations. Bjerre RD, Hugerth LW, Boulund F, ..., Johansen JD, Engstrand L Sci Rep 9 (1) 17287 2019-11-21 2019-11-21
Metabolically Active Brown Adipose Tissue Is Found in Adult Subjects with Type 1 Diabetes. Eriksson O, Selvaraju RK, Berglund M, Espes D Int J Mol Sci 20 (23) 5827 2019-11-20 2019-11-20
Structure of a mitochondrial ATP synthase with bound native cardiolipin. Mühleip A, McComas SE, Amunts A Elife 8 (-) - 2019-11-18 2019-11-18
More Favorable Palmitic Acid Over Palmitoleic Acid Modification of Wnt3 Ensures Its Localization and Activity in Plasma Membrane Domains. Azbazdar Y, Ozalp O, Sezgin E, ..., Karaca E, Ozhan G Front Cell Dev Biol 7 (-) 281 2019-11-15 2019-11-15
ProTstab - predictor for cellular protein stability. Yang Y, Ding X, Zhu G, ..., Lv Q, Vihinen M BMC Genomics 20 (1) 804 2019-11-04 2019-11-04
Systems biology perspective for studying the gut microbiota in human physiology and liver diseases. Altay O, Nielsen J, Uhlen M, Boren J, Mardinoglu A EBioMedicine 49 (-) 364-373 2019-11-00 2019-10-18
Molecular imaging mass spectrometry for probing protein dynamics in neurodegenerative disease pathology. Michno W, Wehrli PM, Blennow K, Zetterberg H, Hanrieder J J. Neurochem. 151 (4) 488-506 2019-11-00 2018-11-06
Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome. Barandun J, Hunziker M, Vossbrinck CR, Klinge S Nat. Microbiol 4 (11) 1798-1804 2019-11-00 2019-07-22
Chemometric Strategies for Sensitive Annotation and Validation of Anatomical Regions of Interest in Complex Imaging Mass Spectrometry Data. Wehrli PM, Michno W, Blennow K, Zetterberg H, Hanrieder J J. Am. Soc. Mass Spectrom. 30 (11) 2278-2288 2019-11-00 2019-09-16
Association of PTHrP levels in CSF with Alzheimer's disease biomarkers. Kushnir MM, Michno W, Rockwood AL, ..., Strathmann FG, Hanrieder J Clin Mass Spectrom 14 Pt B (-) 124-129 2019-11-00 2018-10-09
Sharing Data from Molecular Simulations. Abraham M, Apostolov R, Barnoud J, ..., Woods C, Zhmurov A J Chem Inf Model 59 (10) 4093-4099 2019-10-28 2019-10-11
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples. Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N Nat Commun 10 (1) 4732 2019-10-18 2019-10-18
Assessment of glucagon receptor occupancy by Positron Emission Tomography in non-human primates. Eriksson O, Velikyan I, Haack T, ..., Pierrou S, Wagner M Sci Rep 9 (1) 14960 2019-10-18 2019-10-18
Dual Bioorthogonal Labeling of the Amyloid-β Protein Precursor Facilitates Simultaneous Visualization of the Protein and Its Cleavage Products. van Husen LS, Schedin-Weiss S, Trung MN, ..., Elsässer SJ, Tjernberg LO J. Alzheimers Dis. 72 (2) 537-548 2019-10-15 2019-10-15
Characterization of transgenic mouse models targeting neuromodulatory systems reveals organizational principles of the dorsal raphe. Cardozo Pinto DF, Yang H, Pollak Dorocic I, ..., Smidt MP, Lammel S Nat Commun 10 (1) 4633 2019-10-11 2019-10-11
Remodeling the genome with DNA twists. Bowman GD, Deindl S Science (New York, N.Y.) 366 (6461) 35-36 2019-10-04 2019-10-12
Industrial wastewater treatment plant enriches antibiotic resistance genes and alters the structure of microbial communities. Bengtsson-Palme J, Milakovic M, Švecová H, ..., Grabic R, Udikovic-Kolic N Water Res 162 (-) 437-445 2019-10-01 2019-07-04
VGLUT2 rs2290045 genotype moderates environmental sensitivity to alcohol-related problems in three samples of youths. Vrettou M, Nilsson KW, Tuvblad C, ..., Nylander I, Comasco E Eur Child Adolesc Psychiatry 28 (10) 1329-1340 2019-10-00 2019-02-25
Pancreatic perfusion and its response to glucose as measured by simultaneous PET/MRI. Espes D, Manell E, Rydén A, ..., Jansson L, Eriksson O Acta diabetologica 56 (10) 1113-1120 2019-10-00 2019-04-26
High-definition spatial transcriptomics for in situ tissue profiling. Vickovic S, Eraslan G, Salmén F, ..., Regev A, Ståhl PL Nat. Methods 16 (10) 987-990 2019-10-00 2019-09-09
Genetic basis and timing of a major mating system shift in Capsella. Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T New Phytol. 224 (1) 505-517 2019-10-00 2019-08-01
Association between Transcription Factor AP-2B genotype, obesity, insulin resistance and dietary intake in a longitudinal birth cohort study. Joost U, Villa I, Comasco E, ..., Veidebaum T, Harro J Int J Obes (Lond) 43 (10) 2095-2106 2019-10-00 2019-06-17
EvoChromo: towards a synthesis of chromatin biology and evolution. Drinnenberg IA, Berger F, Elsässer SJ, ..., Warnecke T, Wolfe KH Development 146 (19) - 2019-09-26 2019-09-26
Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1. Masser AE, Kang W, Roy J, ..., Friedländer MR, Andréasson C Elife 8 (-) - 2019-09-25 2019-09-25
Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock. Ray J, Munn PR, Vihervaara A, ..., Danko CG, Lis JT Proc. Natl. Acad. Sci. U.S.A. 116 (39) 19431-19439 2019-09-24 2019-09-10
What industry can teach academia. Mao Y Science (New York, N.Y.) 365 (6459) 1342 2019-09-20 2019-10-12
Quantitative Multiplexed ChIP Reveals Global Alterations that Shape Promoter Bivalency in Ground State Embryonic Stem Cells. Kumar B, Elsässer SJ Cell Reports 28 (12) 3274-3284.e5 2019-09-17 2019-09-19
Mechanical properties of plasma membrane vesicles correlate with lipid order, viscosity and cell density. Steinkühler J, Sezgin E, Urbančič I, Eggeling C, Dimova R Commun Biol 2 (-) 337 2019-09-13 2019-09-13
Strategies to Reduce or Eliminate Resistant Pathogens in the Environment Bengtsson‐Palme J, Heß S Antibiotic Drug Resistance - (-) 637-673 2019-09-09 2019-08-23
Mumame: a software tool for quantifying gene-specific point-mutations in shotgun metagenomic data Magesh S, Jonsson V, Bengtsson-Palme J MBMG 3 (-) - 2019-09-04 2019-09-04
Insights Into Enhanced Complement Activation by Structures of Properdin and Its Complex With the C-Terminal Domain of C3b. van den Bos RM, Pearce NM, Granneman J, Brondijk THC, Gros P Front Immunol 10 (-) 2097 2019-09-04 2019-09-04
Streptococcal sagA activates a proinflammatory response in mast cells by a sublytic mechanism. von Beek C, Waern I, Eriksson J, ..., Guss B, Pejler G Cell. Microbiol. 21 (9) e13064 2019-09-00 2019-07-07
Salmonella persisters promote the spread of antibiotic resistance plasmids in the gut. Bakkeren E, Huisman JS, Fattinger SA, ..., Diard M, Hardt WD Nature 573 (7773) 276-280 2019-09-00 2019-09-04
Investigation of the skin microbiome: swabs vs. biopsies. Prast-Nielsen S, Tobin AM, Adamzik K, ..., Engstrand L, Fry L Br. J. Dermatol. 181 (3) 572-579 2019-09-00 2019-05-06
Impact of demography on linked selection in two outcrossing Brassicaceae species. Mattila TM, Laenen B, Horvath R, ..., Savolainen O, Slotte T Ecol Evol 9 (17) 9532-9545 2019-09-00 2019-08-13
Genomic data provide new insights on the demographic history and the extent of recent material transfers in Norway spruce. Chen J, Li L, Milesi P, ..., Vendramin GG, Lascoux M Evol Appl 12 (8) 1539-1551 2019-09-00 2019-04-30
Early life stress and voluntary alcohol consumption in relation to Maoa methylation in male rats. Bendre M, Granholm L, Drennan R, ..., Nylander I, Comasco E Alcohol 79 (-) 7-16 2019-09-00 2018-11-08
Turning Up the Heat: Local Temperature Control During in vivo Imaging of Immune Cells. Ahl D, Eriksson O, Sedin J, ..., Christoffersson G, Phillipson M Front Immunol 10 (-) 2036 2019-08-27 2019-08-27
Nanoscale dynamics of cholesterol in the cell membrane. Pinkwart K, Schneider F, Lukoseviciute M, ..., Eggeling C, Sezgin E J. Biol. Chem. 294 (34) 12599-12609 2019-08-23 2019-07-03
Molecular Basis and Ecological Relevance of Caulobacter Cell Filamentation in Freshwater Habitats. Heinrich K, Leslie DJ, Morlock M, Bertilsson S, Jonas K MBio 10 (4) - 2019-08-20 2019-08-20
Progress towards the Tree of Eukaryotes. Keeling PJ, Burki F Curr. Biol. 29 (16) R808-R817 2019-08-19 2019-08-21
MRPS25 mutations impair mitochondrial translation and cause encephalomyopathy. Bugiardini E, Mitchell AL, Rosa ID, ..., Pitceathly RDS, Spinazzola A Hum. Mol. Genet. 28 (16) 2711-2719 2019-08-15 2019-05-01
LIPG-promoted lipid storage mediates adaptation to oxidative stress in breast cancer. Cadenas C, Vosbeck S, Edlund K, ..., Marchan R, Hengstler JG Int. J. Cancer 145 (4) 901-915 2019-08-15 2019-02-07
Chemoselective probe for detailed analysis of ketones and aldehydes produced by gut microbiota in human samples. Conway LP, Garg N, Lin W, ..., Löhr JM, Globisch D Chem. Commun. (Camb.) 55 (62) 9080-9083 2019-08-11 2019-07-09
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies. Rangavittal S, Stopa N, Tomaszkiewicz M, ..., Makova KD, Medvedev P BMC Genomics 20 (1) 641 2019-08-09 2019-08-09
The ribosomal protein S1-dependent standby site in tisB mRNA consists of a single-stranded region and a 5' structure element. Romilly C, Deindl S, Wagner EGH Proc. Natl. Acad. Sci. U.S.A. 116 (32) 15901-15906 2019-08-06 2019-07-18
Tools for Bioimaging Pancreatic β Cells in Diabetes. Kang NY, Soetedjo AAP, Amirruddin NS, ..., Eriksson O, Teo AKK Trends in molecular medicine 25 (8) 708-722 2019-08-00 2019-06-06
Strategies for increasing the throughput of super-resolution microscopies. Mahecic D, Testa I, Griffié J, Manley S Curr Opin Chem Biol 51 (-) 84-91 2019-08-00 2019-06-15
Single-cell expression noise and gene-body methylation in Arabidopsis thaliana. Horvath R, Laenen B, Takuno S, Slotte T Heredity (Edinb) 123 (2) 81-91 2019-08-00 2019-01-16
Hypothalamic-pituitary-adrenal axis responsiveness, startle response, and sensorimotor gating in late pregnancy. Breedh J, Comasco E, Hellgren C, ..., Skalkidou A, Poromaa IS Psychoneuroendocrinology 106 (-) 1-8 2019-08-00 2019-03-15
Human prenatal exposure to polychlorinated biphenyls (PCBs) and risk behaviors in adolescence. Dickerson AS, Ransome Y, Karlsson O Environ Int 129 (-) 247-255 2019-08-00 2019-05-27
Elucidating the Reprograming of Colorectal Cancer Metabolism Using Genome-Scale Metabolic Modeling. Zhang C, Aldrees M, Arif M, ..., Mardinoglu A, Aziz MA Front Oncol 9 (-) 681 2019-07-30 2019-07-30
Amyloid fibril polymorphism and cell-specific toxicity in vivo. Jonson M, Nyström S, Sandberg A, ..., Thor S, Hammarström P Amyloid 26 (sup1) 136-137 2019-07-26 2019-07-26
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis. Smillie CS, Biton M, Ordovas-Montanes J, ..., Xavier RJ, Regev A Cell 178 (3) 714-730.e22 2019-07-25 2019-07-28
Constitutive Serotonin Transporter Reduction Resembles Maternal Separation with Regard to Stress-Related Gene Expression. Comasco E, Schijven D, de Maeyer H, ..., Sundström-Poromaa I, Olivier JDA ACS Chem Neurosci 10 (7) 3132-3142 2019-07-17 2019-01-23
The Potential Use of Metabolic Cofactors in Treatment of NAFLD. Mardinoglu A, Ural D, Zeybel M, ..., Uhlén M, Borén J Nutrients 11 (7) 1578 2019-07-12 2019-07-12
Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nirwan N, Itoh Y, Singh P, ..., Amunts A, Saikrishnan K Nat Commun 10 (1) 3058 2019-07-11 2019-07-11
Coupled Enzymatic Treatment and Mass Spectrometric Analysis for Identification of Glucuronidated Metabolites in Human Samples. Correia MSP, Rao M, Ballet C, Globisch D Chembiochem 20 (13) 1678-1683 2019-07-01 2019-05-08
Regulation of the replication initiator DnaA in Caulobacter crescentus. Felletti M, Omnus DJ, Jonas K Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1862 (7) 697-705 2019-07-00 2018-01-31
Plasma Proteomics Analysis Reveals Dysregulation of Complement Proteins and Inflammation in Acquired Obesity-A Study on Rare BMI-Discordant Monozygotic Twin Pairs. Sahebekhtiari N, Saraswat M, Joenväärä S, ..., Renkonen R, Pietiläinen KH Proteomics Clin Appl 13 (4) e1800173 2019-07-00 2019-02-05
Outlining the proton-conduction pathway in otopetrin channels. Delemotte L Nat. Struct. Mol. Biol. 26 (7) 528-530 2019-07-00 2019-06-27
Cryo-EM structure of the activated RET signaling complex reveals the importance of its cysteine-rich domain. Bigalke JM, Aibara S, Roth R, ..., Amunts A, Sandmark J Sci Adv 5 (7) eaau4202 2019-07-00 2019-07-31
The Next Generation of Pattern Recognition Receptor Agonists: Improving Response Rates in Cancer Immunotherapy. O' Donovan DH, Mao Y, Mele DA Current medicinal chemistry 27 (34) 5654-5674 2019-06-30 2019-06-30
GPR44 as a Target for Imaging Pancreatic Beta-Cell Mass. Eriksson O Current diabetes reports 19 (8) 49 2019-06-27 2019-06-27
Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden Parducci L, Alsos IG, Unneberg P, ..., Slotte T, Wohlfarth B Front. Ecol. Evol. 7 (-) - 2019-06-20 2019-06-20
Mitotically heritable effects of BMAA on striatal neural stem cell proliferation and differentiation. Pierozan P, Karlsson O Cell Death Dis 10 (7) 478 2019-06-17 2019-06-17
Conformational switches control early maturation of the eukaryotic small ribosomal subunit. Hunziker M, Barandun J, Buzovetsky O, ..., Molina H, Klinge S Elife 8 (-) - 2019-06-17 2019-06-17
Colitis-induced colorectal cancer and intestinal epithelial estrogen receptor beta impact gut microbiota diversity. Ibrahim A, Hugerth LW, Hases L, ..., Engstrand L, Williams C Int. J. Cancer 144 (12) 3086-3098 2019-06-15 2019-01-11
RMetD2: a tool for integration of relative transcriptomics data into Genome-scale metabolic models Zhang C, Lee S, Bidkhori G, ..., Nielsen J, Mardinoglu A - - (-) - 2019-06-06 2019-06-06
Regulatory Immune Mechanisms beyond Regulatory T Cells. Christoffersson G, von Herrath M Trends Immunol. 40 (6) 482-491 2019-06-00 2019-05-14
Growth-driven displacement of protein aggregates along the cell length ensures partitioning to both daughter cells in Caulobacter crescentus. Schramm FD, Schroeder K, Alvelid J, Testa I, Jonas K Mol. Microbiol. 111 (6) 1430-1448 2019-06-00 2019-04-03
Biorelevant intrinsic dissolution profiling in early drug development: Fundamental, methodological, and industrial aspects. Bergström CAS, Box K, Holm R, ..., Schäfer KJ, Teleki A Eur J Pharm Biopharm 139 (-) 101-114 2019-06-00 2019-03-09
Sex differences in IL-17 contribute to chronicity in male versus female urinary tract infection. Zychlinsky Scharff A, Rousseau M, Lacerda Mariano L, ..., Duffy D, Ingersoll MA JCI Insight 5 (13) - 2019-05-30 2019-05-30
Mucus Architecture and Near-Surface Swimming Affect Distinct Salmonella Typhimurium Infection Patterns along the Murine Intestinal Tract. Furter M, Sellin ME, Hansson GC, Hardt WD Cell Reports 27 (9) 2665-2678.e3 2019-05-28 2019-05-30
Barcoded Consortium Infections Resolve Cell Type-Dependent Salmonella enterica Serovar Typhimurium Entry Mechanisms. Di Martino ML, Ek V, Hardt WD, Eriksson J, Sellin ME MBio 10 (3) - 2019-05-21 2019-05-21
Lysosomotropic challenge of mast cells causes intra-granular reactive oxygen species production. Paivandy A, Eriksson J, Melo FR, Sellin ME, Pejler G Cell death discovery 5 (1) 95 2019-05-15 2019-05-15
EXOSC10 is required for RPA assembly and controlled DNA end resection at DNA double-strand breaks. Domingo-Prim J, Endara-Coll M, Bonath F, ..., Huertas P, Visa N Nat Commun 10 (1) 2135 2019-05-13 2019-05-13
Mucosal-associated invariant T cells and oral microbiome in persistent apical periodontitis. Davanian H, Gaiser RA, Silfverberg M, ..., Engstrand L, Sällberg Chen M Int J Oral Sci 11 (2) 16 2019-05-09 2019-05-09
Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis. Herp S, Brugiroux S, Garzetti D, ..., Berry D, Stecher B Cell Host Microbe 25 (5) 681-694.e8 2019-05-08 2019-04-18
Multi-Omic Data Interpretation to Repurpose Subtype Specific Drug Candidates for Breast Cancer. Turanli B, Karagoz K, Bidkhori G, ..., Mardinoglu A, Arga KY Front Genet 10 (-) 420 2019-05-07 2019-05-07
Human skin long noncoding RNA WAKMAR1 regulates wound healing by enhancing keratinocyte migration. Li D, Kular L, Vij M, ..., Jagodic M, Landén NX Proc. Natl. Acad. Sci. U.S.A. 116 (19) 9443-9452 2019-05-07 2019-04-24
Long Time-Scale Atomistic Simulations of the Structure and Dynamics of Transcription Factor-DNA Recognition. Liao Q, Lüking M, Krüger DM, ..., Kasson PM, Lynn Kamerlin SC J Phys Chem B 123 (17) 3576-3590 2019-05-02 2019-04-18
Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris). Kryvokhyzha D, Milesi P, Duan T, ..., Glémin S, Lascoux M PLoS Genet 15 (5) e1008131 2019-05-00 2019-05-13
Stress-related genetic polymorphisms in association with peripartum depression symptoms and stress hormones: A longitudinal population-based study. Skalkidou A, Poromaa IS, Iliadis SI, ..., Freyhult E, Comasco E Psychoneuroendocrinology 103 (-) 296-305 2019-05-00 2019-02-07
GM1 locates to mature amyloid structures implicating a prominent role for glycolipid-protein interactions in Alzheimer pathology. Michno W, Wehrli PM, Zetterberg H, Blennow K, Hanrieder J Biochim Biophys Acta Proteins Proteom 1867 (5) 458-467 2019-05-00 2018-09-28
<scp>CoordinateCleaner</scp> : Standardized cleaning of occurrence records from biological collection databases Zizka A, Silvestro D, Andermann T, ..., Zizka V, Antonelli A Methods Ecol Evol 10 (5) 744-751 2019-05-00 2019-02-24
Pyroglutamation of amyloid-βx-42 (Aβx-42) followed by Aβ1-40 deposition underlies plaque polymorphism in progressing Alzheimer's disease pathology. Michno W, Nyström S, Wehrli P, ..., Zetterberg H, Hanrieder J J Biol Chem 294 (17) 6719-6732 2019-04-26 2019-02-27
Non-Invasive Imaging Methodologies for Assessment of Radiation Damage to Bone Marrow and Kidneys from Peptide Receptor Radionuclide Therapy. Ahlstedt J, Johansson E, Sydoff M, ..., Gram M, Eriksson O Neuroendocrinology 110 (1-2) 130-138 2019-04-19 2019-04-19
Direct observation of coordinated DNA movements on the nucleosome during chromatin remodelling. Sabantsev A, Levendosky RF, Zhuang X, Bowman GD, Deindl S Nat Commun 10 (1) 1720 2019-04-12 2019-04-12
Receptor-Independent Transfer of Low Density Lipoprotein Cargo to Biomembranes. Axmann M, Sezgin E, Karner A, ..., Stangl H, Plochberger B Nano Lett. 19 (4) 2562-2567 2019-04-10 2019-03-08
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture. Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M Nat Commun 10 (1) 1636 2019-04-09 2019-04-09
Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis. Maniatis S, Äijö T, Vickovic S, ..., Bonneau R, Phatnani H Science (New York, N.Y.) 364 (6435) 89-93 2019-04-05 2019-04-06
System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection. Garcia-Moreno M, Noerenberg M, Ni S, ..., Mohammed S, Castello A Mol. Cell 74 (1) 196-211.e11 2019-04-04 2019-02-21
Mature Human White Adipocytes Cultured under Membranes Maintain Identity, Function, and Can Transdifferentiate into Brown-like Adipocytes. Harms MJ, Li Q, Lee S, ..., Spalding KL, Boucher J Cell Reports 27 (1) 213-225.e5 2019-04-02 2019-04-04
Case Reports of Pre-clinical Replication Studies in Metabolism and Diabetes. von Herrath M, Pagni PP, Grove K, ..., Karlsen AE, Petersen JS Cell Metab. 29 (4) 795-802 2019-04-02 2019-03-14
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life. Strassert JFH, Jamy M, Mylnikov AP, Tikhonenkov DV, Burki F Mol. Biol. Evol. 36 (4) 757-765 2019-04-01 2019-01-23
Synthesis and preclinical evaluation of the CRTH2 antagonist [11C]MK-7246 as a novel PET tracer and potential surrogate marker for pancreatic beta-cell mass. Eriksson J, Roy T, Sawadjoon S, ..., Eriksson O, Odell LR Nucl. Med. Biol. 71 (-) 1-10 2019-04-00 2019-04-13
Measuring nanoscale diffusion dynamics in cellular membranes with super-resolution STED-FCS. Sezgin E, Schneider F, Galiani S, ..., Lagerholm BC, Eggeling C Nat Protoc 14 (4) 1054-1083 2019-04-00 2019-03-06
Liver macrophages regulate systemic metabolism through non-inflammatory factors. Morgantini C, Jager J, Li X, ..., Bajgar A, Aouadi M Nat Metab 1 (4) 445-459 2019-04-00 2019-03-25
Discovery of therapeutic agents for prostate cancer using genome-scale metabolic modeling and drug repositioning. Turanli B, Zhang C, Kim W, ..., Arga KY, Mardinoglu A EBioMedicine 42 (-) 386-396 2019-04-00 2019-03-21
A whole-brain atlas of monosynaptic input targeting four different cell types in the medial prefrontal cortex of the mouse. Ährlund-Richter S, Xuan Y, van Lunteren JA, ..., Meletis K, Carlén M Nat. Neurosci. 22 (4) 657-668 2019-04-00 2019-03-18
Comprehensive kinetic and substrate specificity analysis of an arylsulfatase from Helix pomatia using mass spectrometry. Correia MSP, Ballet C, Meistermann H, Conway LP, Globisch D Bioorg. Med. Chem. 27 (6) 955-962 2019-03-15 2019-01-30
Expression of PD-L1 and PD-1 in Chemoradiotherapy-Naïve Esophageal and Gastric Adenocarcinoma: Relationship With Mismatch Repair Status and Survival. Svensson MC, Borg D, Zhang C, ..., Leandersson K, Jirström K Front Oncol 9 (-) 136 2019-03-13 2019-03-13
Vertical stratification of bacteria and archaea in sediments of a small boreal humic lake. Rissanen AJ, Peura S, Mpamah PA, ..., Mäki A, Nykänen H FEMS Microbiol. Lett. 366 (5) - 2019-03-01 2019-02-27
Pyruvate kinase L/R is a regulator of lipid metabolism and mitochondrial function. Liu Z, Zhang C, Lee S, ..., Boren J, Mardinoglu A Metab. Eng. 52 (-) 263-272 2019-03-00 2019-01-04
Plant microRNAs in human sera are likely contaminants. Fromm B, Kang W, Rovira C, ..., Friedländer MR, Tosar JP J Nutr Biochem 65 (-) 139-140 2019-03-00 2018-09-05
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa. Monnahan P, Kolář F, Baduel P, ..., Bomblies K, Yant L Nat Ecol Evol 3 (3) 457-468 2019-03-00 2019-02-25
Long-term balancing selection drives evolution of immunity genes in Capsella. Koenig D, Hagmann J, Li R, ..., Wright SI, Weigel D Elife 8 (-) - 2019-02-26 2019-02-26
Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha). Fromm B, Tosar JP, Aguilera F, ..., Bachmann L, Hejnol A Noncoding RNA 5 (1) 19 2019-02-22 2019-02-22
First-in-class positron emission tomography tracer for the glucagon receptor. Velikyan I, Haack T, Bossart M, ..., Wagner M, Eriksson O EJNMMI Res 9 (1) 17 2019-02-15 2019-02-15
Heterogeneity of Metabolic Defects in Type 2 Diabetes and Its Relation to Reactive Oxygen Species and Alterations in Beta-Cell Mass. Elksnis A, Martinell M, Eriksson O, Espes D Front. Physiol. 10 (-) 107 2019-02-13 2019-02-13
A conserved molecular switch in Class F receptors regulates receptor activation and pathway selection. Wright SC, Kozielewicz P, Kowalski-Jahn M, ..., Carlsson J, Schulte G Nat Commun 10 (1) 667 2019-02-08 2019-02-08
Kinetic modeling of the Calvin cycle identifies flux control and stable metabolomes in Synechocystis carbon fixation. Janasch M, Asplund-Samuelsson J, Steuer R, Hudson EP J. Exp. Bot. 70 (3) 973-983 2019-02-05 2018-10-30
Structural Patching Fosters Divergence of Mitochondrial Ribosomes. Petrov AS, Wood EC, Bernier CR, ..., Brown A, Amunts A Mol. Biol. Evol. 36 (2) 207-219 2019-02-01 2018-12-06
Smart scanning for low-illumination and fast RESOLFT nanoscopy in vivo. Dreier J, Castello M, Coceano G, ..., Vicidomini G, Testa I Nat Commun 10 (1) 556 2019-02-01 2019-02-01
Transcription-driven chromatin repression of Intragenic transcription start sites. Nielsen M, Ard R, Leng X, ..., Pelechano V, Marquardt S PLoS Genet 15 (2) e1007969 2019-02-00 2019-02-01
How good are pathogenicity predictors in detecting benign variants? Niroula A, Vihinen M PLoS Comput Biol 15 (2) e1006481 2019-02-00 2019-02-11
Characterization of heterogeneous redox responses in hepatocellular carcinoma patients using network analysis. Benfeitas R, Bidkhori G, Mukhopadhyay B, ..., Kunos G, Mardinoglu A EBioMedicine 40 (-) 471-487 2019-02-00 2018-12-31
Discovery of KIRREL as a biomarker for prognostic stratification of patients with thin melanoma. Lundgren S, Fagerström-Vahman H, Zhang C, ..., Nodin B, Jirström K Biomark Res 7 (1) 1 2019-01-14 2019-01-14
Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia. Guzman-Otazo J, Gonzales-Siles L, Poma V, ..., Iñiguez V, Sjöling Å PLoS ONE 14 (1) e0210735 2019-01-14 2019-01-14
Negative Association Between Allopregnanolone and Cerebral Serotonin Transporter Binding in Healthy Women of Fertile Age. Sundström Poromaa I, Comasco E, Bäckström T, ..., Jensen P, Frokjaer VG Front Psychol 9 (-) 2767 2019-01-11 2019-01-11
The Circulating Transcriptome as a Source of Biomarkers for Melanoma. Solé C, Tramonti D, Schramm M, ..., Middleton MR, Lawrie CH Cancers (Basel) 11 (1) 70 2019-01-10 2019-01-10
Decreased Snow Cover Stimulates Under-Ice Primary Producers but Impairs Methanotrophic Capacity. Garcia SL, Szekely AJ, Bergvall C, Schattenhofer M, Peura S mSphere 4 (1) - 2019-01-09 2019-01-09
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nilsson RH, Larsson KH, Taylor AFS, ..., Kõljalg U, Abarenkov K Nucleic Acids Res. 47 (D1) D259-D264 2019-01-08 2018-10-30
Ascetosporea. Bass D, Ward GM, Burki F Curr. Biol. 29 (1) R7-R8 2019-01-07 2019-01-09
The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium. Westermann AJ, Venturini E, Sellin ME, ..., Hardt WD, Vogel J MBio 10 (1) - 2019-01-02 2019-01-02
A Neural Circuit Mechanism for Encoding Aversive Stimuli in the Mesolimbic Dopamine System. de Jong JW, Afjei SA, Pollak Dorocic I, ..., Deisseroth K, Lammel S Neuron 101 (1) 133-151.e7 2019-01-02 2018-11-29
Large expert-curated database for benchmarking document similarity detection in biomedical literature search. Brown P, RELISH Consortium , Zhou Y Database (Oxford) 2019 (-) - 2019-01-01 2019-01-01
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. Andermann T, Fernandes AM, Olsson U, ..., Faircloth BC, Antonelli A Syst. Biol. 68 (1) 32-46 2019-01-01 2018-05-18
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes. Adl SM, Bass D, Lane CE, ..., Zlatogursky V, Zhang Q J. Eukaryot. Microbiol. 66 (1) 4-119 2019-01-00 2018-09-27
Phylogenomics supports the monophyly of the Cercozoa. Irwin NAT, Tikhonenkov DV, Hehenberger E, ..., Burki F, Keeling PJ Mol. Phylogenet. Evol. 130 (-) 416-423 2019-01-00 2018-10-11
Introducing ribosomal tandem repeat barcoding for fungi. Wurzbacher C, Larsson E, Bengtsson-Palme J, ..., Kagami M, Nilsson RH Mol Ecol Resour 19 (1) 118-127 2019-01-00 2018-10-24
Nanostructured Minerals and Vitamins for Food Fortification and Food Supplementation Knijnenburg JTN, Posavec L, Teleki A - - (-) 63-98 2019-00-00 2019-00-00
Assessment and Management of Risks Associated With Antibiotic Resistance in the Environment Bengtsson-Palme J Management of Emerging Public Health Issues and Risks: Multidisciplinary Approaches to the Changing Environment - (-) 243-263 2019-00-00 2019-00-00

Publications 9.5.0