Publications 2011

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Title Authors Journal Published Online
Pegylated liposomal doxorubicin as first-line monotherapy in elderly women with locally advanced or metastatic breast cancer: novel treatment predictive factors identified. Green H, Stål O, Bachmeier K, ..., Åleskog A, Malmström A Cancer Lett. 313 (2) 145-153 2011-12-27 2011-08-31
Cdc6 expression represses E-cadherin transcription and activates adjacent replication origins. Sideridou M, Zakopoulou R, Evangelou K, ..., Moustakas A, Gorgoulis VG J. Cell Biol. 195 (7) 1123-1140 2011-12-26 2011-12-28
Multiple polymorphisms affect expression and function of the neuropeptide S receptor (NPSR1). Anedda F, Zucchelli M, Schepis D, ..., Kere J, D'Amato M PLoS ONE 6 (12) e29523 2011-12-21 2011-12-21
Assessing recent smoking status by measuring exhaled carbon monoxide levels. Sandberg A, Sköld CM, Grunewald J, Eklund A, Wheelock ÅM PLoS ONE 6 (12) e28864 2011-12-16 2011-12-16
Regulation of myosin light chain function by BMP signaling controls actin cytoskeleton remodeling. Konstantinidis G, Moustakas A, Stournaras C Cell. Physiol. Biochem. 28 (5) 1031-1044 2011-12-15 2011-12-15
Association between body mass index and insulin receptor substrate-4 (IRS-4) gene polymorphisms in patients with schizophrenia. Melkersson K, Persson B Neuro Endocrinol. Lett. 32 (5) 634-640 2011-12-15 2011-12-15
Striated muscle as implantation site for transplanted pancreatic islets. Espes D, Eriksson O, Lau J, Carlsson PO Journal of transplantation 2011 (-) 352043 2011-12-07 2011-12-07
Decreased defluorination using the novel beta-cell imaging agent [18F]FE-DTBZ-d4 in pigs examined by PET. Jahan M, Eriksson O, Johnström P, ..., Johansson L, Halldin C EJNMMI Res 1 (1) 33 2011-12-05 2011-12-05
A disposable and multifunctional capsule for easy operation of microfluidic elastomer systems Thorslund S, Nguyen H, Läräng T, Barkefors I, Kreuger J J. Micromech. Microeng. 21 (12) 127001 2011-12-01 2011-11-24
The pharmacogenetics of metformin and its impact on plasma metformin steady-state levels and glycosylated hemoglobin A1c. Christensen MM, Brasch-Andersen C, Green H, ..., Beck-Nielsen H, Brosen K Pharmacogenet. Genomics 21 (12) 837-850 2011-12-00 2011-10-13
The Conserved Foot Domain of RNA Pol II Associates with Proteins Involved in Transcriptional Initiation and/or Early Elongation García-López MC, Pelechano V, Mirón-García MC, ..., Pérez-Ortín JE, Navarro F Genetics 189 (4) 1235-1248 2011-12-00 2011-09-27
Postpartum depressive symptoms and the BDNF Val66Met functional polymorphism: effect of season of delivery. Comasco E, Sylvén SM, Papadopoulos FC, ..., Sundström-Poromaa I, Skalkidou A Arch Womens Ment Health 14 (6) 453-463 2011-12-00 2011-10-14
Pathway-based analysis of genetic susceptibility to cervical cancer in situ: HLA-DPB1 affects risk in Swedish women. Ivansson EL, Juko-Pecirep I, Erlich HA, Gyllensten UB Genes Immun. 12 (8) 605-614 2011-12-00 2011-06-30
Microtubules support a disk-like septin arrangement at the plasma membrane of mammalian cells Sellin ME, Holmfeldt P, Stenmark S, Gullberg M MBoC 22 (23) 4588-4601 2011-12-00 2011-12-00
High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer. Hjelm B, Brennan DJ, Zendehrokh N, ..., Jirström K, Uhlen M Proteomics Clin Appl 5 (11-12) 624-635 2011-12-00 2011-10-01
Computational mass spectrometry-based proteomics. Käll L, Vitek O PLoS Comput Biol 7 (12) e1002277 2011-12-00 2011-12-01
Colorimetric nucleic acid testing assay for RNA virus detection based on circle-to-circle amplification of padlock probes. Ke R, Zorzet A, Göransson J, ..., Mirazimi A, Nilsson M J. Clin. Microbiol. 49 (12) 4279-4285 2011-12-00 2011-09-28
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells. Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Mühlemann O RNA 17 (12) 2108-2118 2011-12-00 2011-10-25
Adenovirus with hexon Tat-protein transduction domain modification exhibits increased therapeutic effect in experimental neuroblastoma and neuroendocrine tumors. Yu D, Jin C, Leja J, ..., Eriksson F, Essand M J. Virol. 85 (24) 13114-13123 2011-12-00 2011-09-28
A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken. Dorshorst B, Molin AM, Rubin CJ, ..., Ashwell C, Andersson L PLoS Genet 7 (12) e1002412 2011-12-00 2011-12-22
Counting absolute numbers of molecules using unique molecular identifiers. Kivioja T, Vähärautio A, Karlsson K, ..., Linnarsson S, Taipale J Nat. Methods 9 (1) 72-74 2011-11-20 2011-11-20
Variance decomposition of protein profiles from antibody arrays using a longitudinal twin model. Kato BS, Nicholson G, Neiman M, ..., Spector TD, Schwenk JM Proteome Sci 9 (-) 73 2011-11-17 2011-11-17
Genome sequencing reveals a phage in Helicobacter pylori. Lehours P, Vale FF, Bjursell MK, ..., Engstrand L, Andersson AF MBio 2 (6) - 2011-11-15 2011-11-15
Detection of rolling circle amplified DNA molecules using probe-tagged magnetic nanobeads in a portable AC susceptometer. de la Torre TZ, Mezger A, Herthnek D, ..., Nilsson M, Strømme M Biosens Bioelectron 29 (1) 195-199 2011-11-15 2011-08-22
A lateral flow protein microarray for rapid and sensitive antibody assays. Gantelius J, Bass T, Sjöberg R, Nilsson P, Andersson-Svahn H Int J Mol Sci 12 (11) 7748-7759 2011-11-09 2011-11-09
Archaic human ancestry in East Asia. Skoglund P, Jakobsson M Proc. Natl. Acad. Sci. U.S.A. 108 (45) 18301-18306 2011-11-08 2011-10-31
Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain. Ameur A, Zaghlool A, Halvardson J, ..., Cavelier L, Feuk L Nat. Struct. Mol. Biol. 18 (12) 1435-1440 2011-11-06 2011-11-06
Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment. Neiman M, Hedberg JJ, Dönnes PR, ..., Schwenk JM, Nilsson P J. Proteome Res. 10 (11) 4925-4934 2011-11-04 2011-09-29
Hypothalamic mitochondrial dysfunction associated with anorexia in the anx/anx mouse. Lindfors C, Nilsson IA, Garcia-Roves PM, ..., Schalling M, Johansen JE Proc. Natl. Acad. Sci. U.S.A. 108 (44) 18108-18113 2011-11-01 2011-10-24
Fluorescence techniques to study lipid dynamics. Sezgin E, Schwille P Cold Spring Harbor Perspectives in Biology 3 (11) a009803 2011-11-01 2011-11-01
Western blotting via proximity ligation for high performance protein analysis. Liu Y, Gu J, Hagner-McWhirter Å, ..., Ivansson D, Landegren U Mol. Cell Proteomics 10 (11) O111.011031 2011-11-00 2011-08-02
The Human Protein Atlas as a proteomic resource for biomarker discovery. Pontén F, Schwenk JM, Asplund A, Edqvist PH J. Intern. Med. 270 (5) 428-446 2011-11-00 2011-08-03
Oncolytic viruses for the treatment of neuroendocrine tumors. Essand M, Leja J, Giandomenico V, Oberg KE Horm. Metab. Res. 43 (12) 877-883 2011-11-00 2011-05-30
Oncolytic adenovirus modified with somatostatin motifs for selective infection of neuroendocrine tumor cells. Leja J, Yu D, Nilsson B, ..., Giandomenico V, Essand M Gene Ther. 18 (11) 1052-1062 2011-11-00 2011-04-14
Ligand discovery from a dopamine D3 receptor homology model and crystal structure Carlsson J, Coleman RG, Setola V, ..., Roth BL, Shoichet BK Nat Chem Biol 7 (11) 769-778 2011-11-00 2011-09-18
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies. Hjelm B, Forsström B, Igel U, ..., Johansson C, Uhlén M Protein Sci. 20 (11) 1824-1835 2011-11-00 2011-10-12
Formulating a new basis for the treatment against botulinum neurotoxin intoxication: 3,4-Diaminopyridine prodrug design and characterization Zakhari JS, Kinoyama I, Hixon MS, ..., Globisch D, Janda KD Bioorganic & Medicinal Chemistry 19 (21) 6203-6209 2011-11-00 2011-11-00
Comprehensive study of mtDNA among Southwest Asian dogs contradicts independent domestication of wolf, but implies dog-wolf hybridization. Ardalan A, Kluetsch CF, Zhang AB, ..., Ashtiani SR, Savolainen P Ecol Evol 1 (3) 373-385 2011-11-00 2012-03-07
Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity. Rasmussen M, Sundström M, Göransson Kultima H, ..., Glimelius B, Isaksson A Genome Biol. 12 (10) R108 2011-10-24 2011-10-24
A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk. Zheng Z, Andersson AF, Ye W, ..., Normark S, Engstrand L PLoS ONE 6 (10) e26442 2011-10-21 2011-10-21
Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa. Enroth S, Rada-Iglesisas A, Andersson R, ..., Komorowski J, Wadelius C BMC Cancer 11 (-) 450 2011-10-19 2011-10-19
Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra. Ledvina AR, Savitski MM, Zubarev AR, ..., Coon JJ, Zubarev RA Anal. Chem. 83 (20) 7651-7656 2011-10-15 2011-09-28
MED12, the mediator complex subunit 12 gene, is mutated at high frequency in uterine leiomyomas. Mäkinen N, Mehine M, Tolvanen J, ..., Vahteristo P, Aaltonen LA Science 334 (6053) 252-255 2011-10-14 2011-08-25
A high-resolution map of human evolutionary constraint using 29 mammals. Lindblad-Toh K, Garber M, Zuk O, ..., Lander ES, Kellis M Nature 478 (7370) 476-482 2011-10-12 2011-10-12
Adenosine kinase deficiency disrupts the methionine cycle and causes hypermethioninemia, encephalopathy, and abnormal liver function. Bjursell MK, Blom HJ, Cayuela JA, ..., Lundeberg J, Wedell A Am. J. Hum. Genet. 89 (4) 507-515 2011-10-07 2011-09-28
Rapid flow-sorting to simultaneously resolve multiplex massively parallel sequencing products. Sandberg J, Werne B, Dessing M, Lundeberg J Sci Rep 1 (-) 108 2011-10-06 2011-10-06
Systems-Based Analysis of Modified tRNA Bases Globisch D, Pearson D, Hienzsch A, ..., Sieber SA, Carell T Angewandte Chemie International Edition 50 (41) 9739-9742 2011-10-04 2011-08-31
miR393 and Secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves Si-Ammour A, Windels D, Arn-Bouldoires E, ..., Meins F, Vazquez F PLANT PHYSIOLOGY 157 (2) 683-691 2011-10-01 2011-08-09
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea. Herlemann DP, Labrenz M, Jürgens K, ..., Waniek JJ, Andersson AF ISME J 5 (10) 1571-1579 2011-10-00 2011-04-07
Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes Kutter C, Brown GD, Gonçalves Â, ..., White RJ, Odom DT Nat Genet 43 (10) 948-955 2011-10-00 2011-08-28
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Song L, Zhang Z, Grasfeder LL, ..., Lieb JD, Furey TS Genome Res. 21 (10) 1757-1767 2011-10-00 2011-07-12
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets. Bengtsson J, Eriksson KM, Hartmann M, ..., Rosenblad MA, Nilsson RH Antonie Van Leeuwenhoek 100 (3) 471-475 2011-10-00 2011-06-15
Impact of CYP3A5*3 and CYP2C8-HapC on paclitaxel/carboplatin-induced myelosuppression in patients with ovarian cancer. Gréen H, Khan MS, Jakobsen-Falk I, Åvall-Lundqvist E, Peterson C J Pharm Sci 100 (10) 4205-4209 2011-10-00 2011-06-23
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping. Vaysse A, Ratnakumar A, Derrien T, ..., Hitte C, Webster MT PLoS Genet 7 (10) e1002316 2011-10-00 2011-10-13
Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal? Enyenihi AA, Yang H, Ytterberg AJ, Lyutvinskiy Y, Zubarev RA J. Am. Soc. Mass Spectrom. 22 (10) 1763-1770 2011-10-00 2011-07-19
Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes. Strawbridge RJ, Dupuis J, Prokopenko I, ..., Hamsten A, Florez JC Diabetes 60 (10) 2624-2634 2011-10-00 2011-08-26
Fibroblast growth factor 10 haploinsufficiency causes chronic obstructive pulmonary disease. Klar J, Blomstrand P, Brunmark C, ..., Bergendal B, Dahl N J. Med. Genet. 48 (10) 705-709 2011-10-00 2011-07-08
Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ). Forshed J, Johansson HJ, Pernemalm M, ..., Sandberg A, Lehtiö J Mol. Cell Proteomics 10 (10) M111.010264 2011-10-00 2011-07-06
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP Grotjohann T, Testa I, Leutenegger M, ..., Jakobs S, Hell SW Nature 478 (7368) 204-208 2011-10-00 2011-09-11
A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching Brakemann T, Stiel AC, Weber G, ..., Hell SW, Jakobs S Nat Biotechnol 29 (10) 942-947 2011-10-00 2011-09-11
ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing. Darmanis S, Nong RY, Vänelid J, ..., Kamali-Moghaddam M, Landegren U PLoS ONE 6 (9) e25583 2011-09-29 2011-09-29
High RBM3 expression in prostate cancer independently predicts a reduced risk of biochemical recurrence and disease progression. Jonsson L, Gaber A, Ulmert D, ..., Bjartell A, Jirström K Diagn Pathol 6 (-) 91 2011-09-28 2011-09-28
Genomic determinants of protein evolution and polymorphism in Arabidopsis. Slotte T, Bataillon T, Hansen TT, ..., Wright SI, Schierup MH Genome Biol Evol 3 (-) 1210-1219 2011-09-16 2011-09-16
A phylometagenomic exploration of oceanic alphaproteobacteria reveals mitochondrial relatives unrelated to the SAR11 clade. Brindefalk B, Ettema TJ, Viklund J, Thollesson M, Andersson SG PLoS ONE 6 (9) e24457 2011-09-14 2011-09-14
Zebrafish Ext2 is necessary for Fgf and Wnt signaling, but not for Hh signaling. Fischer S, Filipek-Gorniok B, Ledin J BMC Dev. Biol. 11 (-) 53 2011-09-05 2011-09-05
CK2 phosphorylation of XRCC1 facilitates dissociation from DNA and single-strand break formation during base excision repair. Ström CE, Mortusewicz O, Finch D, ..., Dianov GL, Helleday T DNA Repair (Amst.) 10 (9) 961-969 2011-09-05 2011-08-15
Molecular Characteristics of ERCC1-Negative versus ERCC1-Positive Tumors in Resected NSCLC. Friboulet L, Barrios-Gonzales D, Commo F, ..., André F, Soria JC Clin. Cancer Res. 17 (17) 5562-5572 2011-09-01 2011-07-12
Ecdysteroid receptor from the American lobster Homarus americanus: EcR/RXR isoform cloning and ligand-binding properties. Tarrant AM, Behrendt L, Stegeman JJ, Verslycke T Gen. Comp. Endocrinol. 173 (2) 346-355 2011-09-01 2011-06-22
Understanding and Exploiting Information Spreading and Integrating Technologies Holme P, Huss M J. Comput. Sci. Technol. 26 (5) 829-836 2011-09-00 2011-09-23
Penicillin-binding protein 5 can form a homo-oligomeric complex in the inner membrane of Escherichia coli. Skoog K, Bruzell FS, Ducroux A, ..., Högbom M, Daley DO Protein Sci. 20 (9) 1520-1529 2011-09-00 2011-07-13
Mutations in or near the transmembrane domain alter PMEL amyloid formation from functional to pathogenic. Watt B, Tenza D, Lemmon MA, ..., Andersson L, Marks MS PLoS Genet 7 (9) e1002286 2011-09-00 2011-09-15
Molecular subtypes of osteosarcoma identified by reducing tumor heterogeneity through an interspecies comparative approach. Scott MC, Sarver AL, Gavin KJ, ..., Breen M, Modiano JF Bone 49 (3) 356-367 2011-09-00 2011-05-15
Letter to the editor: SeqXML and OrthoXML: standards for sequence and orthology information. Schmitt T, Messina DN, Schreiber F, Sonnhammer EL Brief. Bioinformatics 12 (5) 485-488 2011-09-00 2011-06-11
Inactivation of Pmel alters melanosome shape but has only a subtle effect on visible pigmentation. Hellström AR, Watt B, Fard SS, ..., Marks MS, Andersson L PLoS Genet 7 (9) e1002285 2011-09-00 2011-09-15
Deciphering the rules governing assembly order of mammalian septin complexes Sellin ME, Sandblad L, Stenmark S, Gullberg M MBoC 22 (17) 3152-3164 2011-09-00 2011-09-00
The genome of the green anole lizard and a comparative analysis with birds and mammals. Alföldi J, Di Palma F, Grabherr M, ..., Ponting CP, Lindblad-Toh K Nature 477 (7366) 587-591 2011-08-31 2011-08-31
The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape Smith DR, Burki F, Yamada T, ..., Van Etten JL, Keeling PJ PLoS ONE 6 (8) e23624 2011-08-26 2011-08-26
Short-time repeat high-risk HPV testing by self-sampling for screening of cervical cancer. Gyllensten U, Sanner K, Gustavsson I, ..., Wikström I, Wilander E Br. J. Cancer 105 (5) 694-697 2011-08-23 2011-08-02
Overexpression of podocalyxin-like protein is an independent factor of poor prognosis in colorectal cancer. Larsson A, Johansson ME, Wangefjord S, ..., Uhlén M, Jirström K Br. J. Cancer 105 (5) 666-672 2011-08-23 2011-08-09
Three periods of regulatory innovation during vertebrate evolution. Lowe CB, Kellis M, Siepel A, ..., Lindblad-Toh K, Haussler D Science 333 (6045) 1019-1024 2011-08-19 2011-08-20
Titration-free 454 sequencing using Y adapters. Zheng Z, Advani A, Melefors Ö, ..., Engstrand L, Andersson AF Nat Protoc 6 (9) 1367-1376 2011-08-18 2011-08-18
TGFβ-induced early activation of the small GTPase RhoA is Smad2/3-independent and involves Src and the guanine nucleotide exchange factor Vav2. Papadimitriou E, Kardassis D, Moustakas A, Stournaras C Cell. Physiol. Biochem. 28 (2) 229-238 2011-08-16 2011-08-16
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. International Multiple Sclerosis Genetics Consortium , Wellcome Trust Case Control Consortium 2 , Sawcer S, ..., Donnelly P, Compston A Nature 476 (7359) 214-219 2011-08-10 2011-08-10
Delay-induced anomalous fluctuations in intracellular regulation. Grönlund A, Lötstedt P, Elf J Nat Commun 2 (-) 419 2011-08-09 2011-08-09
Mapping the subcellular protein distribution in three human cell lines. Fagerberg L, Stadler C, Skogs M, ..., Uhlén M, Lundberg E J. Proteome Res. 10 (8) 3766-3777 2011-08-05 2011-06-29
Domain architecture conservation in orthologs. Forslund K, Pekkari I, Sonnhammer EL BMC Bioinformatics 12 (-) 326 2011-08-05 2011-08-05
Single-molecule investigations of the stringent response machinery in living bacterial cells. English BP, Hauryliuk V, Sanamrad A, ..., Dekker NH, Elf J Proc. Natl. Acad. Sci. U.S.A. 108 (31) E365-E373 2011-08-02 2011-07-05
Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum. Öjemalm K, Higuchi T, Jiang Y, ..., Suga H, von Heijne G Proc. Natl. Acad. Sci. U.S.A. 108 (31) E359-E364 2011-08-02 2011-05-23
Influence of the COMT genotype on working memory and brain activity changes during development. Dumontheil I, Roggeman C, Ziermans T, ..., Kere J, Klingberg T Biol. Psychiatry 70 (3) 222-229 2011-08-01 2011-04-22
Transition of microbial communities during the adaption to anaerobic digestion of carrot waste. Garcia SL, Jangid K, Whitman WB, Das KC Bioresour Technol 102 (15) 7249-7256 2011-08-00 2011-05-06
The underlying mechanism for the PARP and BRCA synthetic lethality: clearing up the misunderstandings. Helleday T Mol Oncol 5 (4) 387-393 2011-08-00 2011-07-22
The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi. Franzén O, Arner E, Ferella M, ..., Andersson B, Daub CO PLoS Negl Trop Dis 5 (8) e1283 2011-08-00 2011-08-30
Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R Structure 19 (8) 1108-1126 2011-08-00 2011-08-00
LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs. Lequarré AS, Andersson L, André C, ..., Lindblad-Toh K, Georges M Vet. J. 189 (2) 155-159 2011-08-00 2011-07-12
Effects of peptide backbone amide-to-ester bond substitution on the cleavage frequency in electron capture dissociation and collision-activated dissociation. Kjeldsen F, Zubarev RA J. Am. Soc. Mass Spectrom. 22 (8) 1441-1452 2011-08-00 2011-05-05
Distribution of adoptively transferred porcine T-lymphoblasts tracked by (18)F-2-fluoro-2-deoxy-D-glucose and position emission tomography. Eriksson O, Sadeghi A, Carlsson B, ..., Korsgren O, Sundin A Nucl. Med. Biol. 38 (6) 827-833 2011-08-00 2011-04-21
Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight. Ka S, Albert FW, Denbow DM, ..., Andersson L, Hallböök F Neurogenetics 12 (3) 211-221 2011-08-00 2011-07-12
Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems. St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE Mol. Ecol. 20 (16) 3306-3320 2011-08-00 2011-07-21
A screening method for phosphohistidine phosphatase 1 activity. Beckman-Sundh U, Ek B, Zetterqvist O, Ek P Ups. J. Med. Sci. 116 (3) 161-168 2011-08-00 2011-06-17
A genomic view of mRNA turnover in yeast Pérez-Ortín JE, Jordán-Pla A, Pelechano V Comptes Rendus Biologies 334 (8-9) 647-654 2011-08-00 2011-08-00
Increased recruitment but impaired function of leukocytes during inflammation in mouse models of type 1 and type 2 diabetes. Pettersson US, Christoffersson G, Massena S, ..., Henriksnäs J, Phillipson M PLoS ONE 6 (7) e22480 2011-07-25 2011-07-25
Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: an analysis of 215 cases from the Malmö Diet and Cancer Study. Jonsson L, Bergman J, Nodin B, ..., Uhlén M, Jirström K J Transl Med 9 (-) 114 2011-07-21 2011-07-21
FAAST: Flow-space Assisted Alignment Search Tool. Lysholm F, Andersson B, Persson B BMC Bioinformatics 12 (-) 293 2011-07-19 2011-07-19
Alzheimer's disease and mild cognitive impairment are associated with elevated levels of isoaspartyl residues in blood plasma proteins. Yang H, Lyutvinskiy Y, Soininen H, Zubarev RA J. Alzheimers Dis. 27 (1) 113-118 2011-07-19 2011-07-19
Flanking residues help determine whether a hydrophobic segment adopts a monotopic or bitopic topology in the endoplasmic reticulum membrane. Nørholm MH, Shulga YV, Aoki S, Epand RM, von Heijne G J. Biol. Chem. 286 (28) 25284-25290 2011-07-15 2011-05-23
5-Hydroxymethylcytosine, the Sixth Base of the Genome Münzel M, Globisch D, Carell T Angewandte Chemie International Edition 50 (29) 6460-6468 2011-07-11 2011-06-17
Exocyst complex component 3-like 2 (EXOC3L2) associates with the exocyst complex and mediates directional migration of endothelial cells. Barkefors I, Fuchs PF, Heldin J, ..., Forsberg-Nilsson K, Kreuger J J. Biol. Chem. 286 (27) 24189-24199 2011-07-08 2011-05-12
Scalable transcriptome preparation for massive parallel sequencing. Stranneheim H, Werne B, Sherwood E, Lundeberg J PLoS ONE 6 (7) e21910 2011-07-07 2011-07-07
Thrombospondin-1: an islet endothelial cell signal of importance for β-cell function. Olerud J, Mokhtari D, Johansson M, ..., Welsh N, Carlsson PO Diabetes 60 (7) 1946-1954 2011-07-00 2011-05-26
Sequence scrambling in shotgun proteomics is negligible. Goloborodko AA, Gorshkov MV, Good DM, Zubarev RA J. Am. Soc. Mass Spectrom. 22 (7) 1121-1124 2011-07-00 2011-04-15
Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas. Thomas R, Seiser EL, Motsinger-Reif A, ..., Modiano JF, Breen M Leuk. Lymphoma 52 (7) 1321-1335 2011-07-00 2011-03-07
Molecular genetics and molecular biology of dyslexia. Kere J Wiley Interdiscip Rev Cogn Sci 2 (4) 441-448 2011-07-00 2011-02-03
Modularity of the Bacterial Cell Cycle Enables Independent Spatial and Temporal Control of DNA Replication Jonas K, Chen YE, Laub MT Current Biology 21 (13) 1092-1101 2011-07-00 2011-07-00
LGI2 truncation causes a remitting focal epilepsy in dogs. Seppälä EH, Jokinen TS, Fukata M, ..., Minassian BA, Lohi H PLoS Genet 7 (7) e1002194 2011-07-00 2011-07-28
Isolated oligodontia associated with mutations in EDARADD, AXIN2, MSX1, and PAX9 genes. Bergendal B, Klar J, Stecksén-Blicks C, Norderyd J, Dahl N Am. J. Med. Genet. A 155A (7) 1616-1622 2011-07-00 2011-05-27
Functional consequences of bidirectional promoters Wei W, Pelechano V, Järvelin AI, Steinmetz LM Trends in Genetics 27 (7) 267-276 2011-07-00 2011-07-00
CoMet--a web server for comparative functional profiling of metagenomes. Lingner T, Asshauer KP, Schreiber F, Meinicke P Nucleic Acids Res. 39 (Web Server issue) W518-W523 2011-07-00 2011-05-26
Both CD4+ FoxP3+ and CD4+ FoxP3- T cells from patients with B-cell malignancy express cytolytic markers and kill autologous leukaemic B cells in vitro. Lindqvist CA, Christiansson LH, Thörn I, ..., Olsson-Strömberg U, Loskog AS Immunology 133 (3) 296-306 2011-07-00 2011-04-05
Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy. Gavrilovic M, Weibrecht I, Conze T, Söderberg O, Wählby C Cytometry A 79 (7) 518-527 2011-07-00 2011-06-10
Genome wide association study identifies KCNMA1 contributing to human obesity. Jiao H, Arner P, Hoffstedt J, ..., Clement K, Dahlman I BMC Med Genomics 4 (-) 51 2011-06-28 2011-06-28
The asthma candidate gene NPSR1 mediates isoform specific downstream signalling. Pietras CO, Vendelin J, Anedda F, ..., Söderhäll C, Kere J BMC Pulm Med 11 (-) 39 2011-06-27 2011-06-27
A frameshift mutation in golden retriever dogs with progressive retinal atrophy endorses SLC4A3 as a candidate gene for human retinal degenerations. Downs LM, Wallin-Håkansson B, Boursnell M, ..., Bergström T, Mellersh CS PLoS ONE 6 (6) e21452 2011-06-27 2011-06-27
Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile. Kilpeläinen TO, Zillikens MC, Stančákova A, ..., Laakso M, Loos RJ Nat. Genet. 43 (8) 753-760 2011-06-26 2011-06-26
Translational database selection and multiplexed sequence capture for up front filtering of reliable breast cancer biomarker candidates. Ståhl PL, Bjursell MK, Mahdessian H, ..., Jirström K, Lundeberg J PLoS ONE 6 (6) e20794 2011-06-15 2011-06-15
Mutations in Frizzled 6 cause isolated autosomal-recessive nail dysplasia. Fröjmark AS, Schuster J, Sobol M, ..., Klar J, Dahl N Am. J. Hum. Genet. 88 (6) 852-860 2011-06-10 2011-06-15
Identification of chromatophore membrane protein complexes formed under different nitrogen availability conditions in Rhodospirillum rubrum. Selao TT, Branca R, Chae PS, ..., Nordlund S, Norén A J. Proteome Res. 10 (6) 2703-2714 2011-06-03 2011-04-26
Nanosilver on nanostructured silica: Antibacterial activity and Ag surface area. Sotiriou GA, Teleki A, Camenzind A, ..., Panke S, Pratsinis SE Chem Eng J 170 (2-3) 547-554 2011-06-01 2011-06-01
Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga Hirakawa Y, Burki F, Keeling PJ Molecular Microbiology 80 (6) 1439-1449 2011-06-00 2011-04-06
Membrane proteins: from bench to bits. von Heijne G Biochem. Soc. Trans. 39 (3) 747-750 2011-06-00 2011-05-24
Genetic association and gene expression analysis identify FGFR1 as a new susceptibility gene for human obesity. Jiao H, Arner P, Dickson SL, ..., Clement K, Dahlman I J. Clin. Endocrinol. Metab. 96 (6) E962-E966 2011-06-00 2011-03-23
Endolithic chlorophyll d-containing phototrophs. Behrendt L, Larkum AW, Norman A, ..., Trampe E, Kühl M ISME J 5 (6) 1072-1076 2011-06-00 2010-12-16
Association of the HLA-G gene +3142C>G polymorphism with systemic lupus erythematosus. Consiglio CR, Veit TD, Monticielo OA, ..., Brenol JC, Chies JA Tissue Antigens 77 (6) 540-545 2011-06-00 2011-03-14
Detailed analysis of variants in FTO in association with body composition in a cohort of 70-year-olds suggests a weakened effect among elderly. Jacobsson JA, Almén MS, Benedict C, ..., Lind L, Schiöth HB PLoS ONE 6 (5) e20158 2011-05-27 2011-05-27
Simultaneous visualization of both signaling cascade activity and end-point gene expression in single cells. Weibrecht I, Grundberg I, Nilsson M, Söderberg O PLoS ONE 6 (5) e20148 2011-05-25 2011-05-25
The zebrafish transcriptome during early development. Vesterlund L, Jiao H, Unneberg P, Hovatta O, Kere J BMC Dev. Biol. 11 (-) 30 2011-05-24 2011-05-24
Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics. Zi Z, Feng Z, Chapnick DA, ..., Moustakas A, Liu X Mol Syst Biol 7 (-) 492 2011-05-24 2011-05-27
Multiple recognition assay reveals prostasomes as promising plasma biomarkers for prostate cancer. Tavoosidana G, Ronquist G, Darmanis S, ..., Landegren UD, Kamali-Moghaddam M Proc. Natl. Acad. Sci. U.S.A. 108 (21) 8809-8814 2011-05-24 2011-05-09
Rapid screening of complex DNA samples by single-molecule amplification and sequencing. Huang J, Zheng Z, Andersson AF, Engstrand L, Ye W PLoS ONE 6 (5) e19723 2011-05-19 2011-05-19
The Trypanosoma cruzi genome; conserved core genes and extremely variable surface molecule families. Andersson B Res. Microbiol. 162 (6) 619-625 2011-05-18 2011-05-18
Full-length transcriptome assembly from RNA-Seq data without a reference genome. Grabherr MG, Haas BJ, Yassour M, ..., Friedman N, Regev A Nat. Biotechnol. 29 (7) 644-652 2011-05-15 2011-05-15
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants. Pinto D, Darvishi K, Shi X, ..., Scherer SW, Feuk L Nat. Biotechnol. 29 (6) 512-520 2011-05-08 2011-05-08
Phosphoproteomic profiling of NSCLC cells reveals that ephrin B3 regulates pro-survival signaling through Akt1-mediated phosphorylation of the EphA2 receptor. Ståhl S, Branca RM, Efazat G, ..., Viktorsson K, Lehtiö J J. Proteome Res. 10 (5) 2566-2578 2011-05-06 2011-04-11
Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism. Holme P, Huss M, Lee SH PLoS ONE 6 (5) e19759 2011-05-06 2011-05-06
Characterization of NPY Y2 receptor protein expression in the mouse brain. II. Coexistence with NPY, the Y1 receptor, and other neurotransmitter-related molecules. Stanić D, Mulder J, Watanabe M, Hökfelt T J. Comp. Neurol. 519 (7) 1219-1257 2011-05-01 2011-04-01
Design of a peptide-based vector, PepFect6, for efficient delivery of siRNA in cell culture and systemically in vivo. Andaloussi SE, Lehto T, Mäger I, ..., Smith CI, Langel U Nucleic Acids Res. 39 (9) 3972-3987 2011-05-00 2011-01-17
Assessment of receptor occupancy-over-time of two dopamine transporter inhibitors by [(11)C]CIT and target controlled infusion. Eriksson O, Långström B, Josephsson R Ups. J. Med. Sci. 116 (2) 100-106 2011-05-00 2011-03-28
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria. Farnelid H, Andersson AF, Bertilsson S, ..., Hagström Å, Riemann L PLoS ONE 6 (4) e19223 2011-04-29 2011-04-29
Large scale library generation for high throughput sequencing. Borgström E, Lundin S, Lundeberg J PLoS ONE 6 (4) e19119 2011-04-27 2011-04-27
Charged flanking residues control the efficiency of membrane insertion of the first transmembrane segment in yeast mitochondrial Mgm1p. Osterberg M, Calado Botelho S, von Heijne G, Kim H FEBS Lett. 585 (8) 1238-1242 2011-04-20 2011-03-30
Discovery and Synthesis of New UV-Induced Intrastrand C(4−8)G and G(8−4)C Photolesions Münzel M, Szeibert C, Glas AF, Globisch D, Carell T J. Am. Chem. Soc. 133 (14) 5186-5189 2011-04-13 2011-04-13
Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations Delemotte L, Tarek M, Klein ML, Amaral C, Treptow W Proceedings of the National Academy of Sciences 108 (15) 6109-6114 2011-04-12 2011-03-28
Hybrid, silica-coated, Janus-like plasmonic-magnetic nanoparticles. Sotiriou GA, Hirt AM, Lozach PY, ..., Krumeich F, Pratsinis SE Chem Mater 23 (7) 1985-1992 2011-04-12 2011-04-12
Genomic-wide methods to evaluate transcription rates in yeast. García-Martínez J, Pelechano V, Pérez-Ortín JE Methods in molecular biology (Clifton, N.J.) 734 (-) 25-44 2011-04-07 2011-04-07
Systematic analysis of native membrane protein complexes in Escherichia coli. Maddalo G, Stenberg-Bruzell F, Götzke H, ..., Ilag LL, Daley DO J. Proteome Res. 10 (4) 1848-1859 2011-04-01 2011-02-18
Untangling the phenotypic heterogeneity of Diamond Blackfan anemia. Farrar JE, Dahl N Semin. Hematol. 48 (2) 124-135 2011-04-00 2011-03-26
MAOA genotype, family relations and sexual abuse in relation to adolescent alcohol consumption. Nilsson KW, Comasco E, Åslund C, ..., Leppert J, Oreland L Addict Biol 16 (2) 347-355 2011-04-00 2010-08-23
Parameters of the Protein Energy Landscapes of Several Light-Harvesting Complexes Probed via Spectral Hole Growth Kinetics Measurements Herascu N, Najafi M, Amunts A, ..., Seibert M, Zazubovich V J. Phys. Chem. B 115 (12) 2737-2747 2011-03-31 2011-03-31
The insulin receptor substrate-4 (IRS-4) gene and schizophrenia: no evidence for a main genetic factor, however one report of a single schizophrenia patient with a mutation. Melkersson K, Persson B, Hongslo T Neuro Endocrinol. Lett. 32 (1) 52-58 2011-03-17 2011-03-17
TIM23-mediated insertion of transmembrane α-helices into the mitochondrial inner membrane. Botelho SC, Osterberg M, Reichert AS, ..., von Heijne G, Kim H EMBO J. 30 (6) 1003-1011 2011-03-16 2011-02-15
5'UTR variants of ribosomal protein S19 transcript determine translational efficiency: implications for Diamond-Blackfan anemia and tissue variability. Badhai J, Schuster J, Gidlöf O, Dahl N PLoS ONE 6 (3) e17672 2011-03-11 2011-03-11
Decoding a substantial set of samples in parallel by massive sequencing. Neiman M, Lundin S, Savolainen P, Ahmadian A PLoS ONE 6 (3) e17785 2011-03-09 2011-03-09
Shotgun sequencing analysis of Trypanosoma cruzi I Sylvio X10/1 and comparison with T. cruzi VI CL Brener. Franzén O, Ochaya S, Sherwood E, ..., Miles MA, Andersson B PLoS Negl Trop Dis 5 (3) e984 2011-03-08 2011-03-08
Cancer. New epigenetic drivers of cancers. Elsässer SJ, Allis CD, Lewis PW Science (New York, N.Y.) 331 (6021) 1145-1146 2011-03-04 2011-03-10
Intramuscular islet transplantation promotes restored islet vascularity. Christoffersson G, Carlsson PO, Phillipson M Islets 3 (2) 69-71 2011-03-01 2011-03-01
Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins. Ameur A, Stewart JB, Freyer C, ..., Larsson NG, Gyllensten U PLoS Genet 7 (3) e1002028 2011-03-00 2011-03-24
Systematic antibody and antigen-based proteomic profiling with microarrays. Ayoglu B, Häggmark A, Neiman M, ..., Schwenk JM, Nilsson P Expert Rev. Mol. Diagn. 11 (2) 219-234 2011-03-00 2011-03-17
Maltreatment, MAOA, and delinquency: sex differences in gene-environment interaction in a large population-based cohort of adolescents. Aslund C, Nordquist N, Comasco E, ..., Oreland L, Nilsson KW Behav. Genet. 41 (2) 262-272 2011-03-00 2010-08-24
Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803 Montagud A, Zelezniak A, Navarro E, ..., Urchueguía JF, Patil KR Biotechnology Journal 6 (3) 330-342 2011-03-00 2011-01-11
CUBN is a gene locus for albuminuria. Böger CA, Chen MH, Tin A, ..., Fox CS, Kao WH J. Am. Soc. Nephrol. 22 (3) 555-570 2011-03-00 2011-03-01
A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs. Olsson M, Meadows JR, Truvé K, ..., Tintle L, Lindblad-Toh K PLoS Genet 7 (3) e1001332 2011-03-00 2011-03-17
TGFbeta activates mitogen- and stress-activated protein kinase-1 (MSK1) to attenuate cell death. van der Heide LP, van Dinther M, Moustakas A, ten Dijke P J. Biol. Chem. 286 (7) 5003-5011 2011-02-18 2010-11-24
The HDAC inhibitor FK228 enhances adenoviral transgene expression by a transduction-independent mechanism but does not increase adenovirus replication. Danielsson A, Dzojic H, Rashkova V, Cheng WS, Essand M PLoS ONE 6 (2) e14700 2011-02-17 2011-02-17
The RACK1 Signaling Scaffold Protein Selectively Interacts with Yersinia pseudotuberculosis Virulence Function Thorslund SE, Edgren T, Pettersson J, ..., Wolf-Watz H, Fällman M PLoS ONE 6 (2) e16784 2011-02-10 2011-02-10
Improved predictions by Pcons.net using multiple templates. Larsson P, Skwark MJ, Wallner B, Elofsson A Bioinformatics 27 (3) 426-427 2011-02-01 2010-12-11
Theoretical modelling of physiologically stretched vessel in magnetisable stent assisted magnetic drug targeting application Mardinoglu A, Cregg PJ, Murphy K, Curtin M, Prina-Mello A Journal of Magnetism and Magnetic Materials 323 (3-4) 324-329 2011-02-00 2011-02-00
Sun-induced nonsynonymous p53 mutations are extensively accumulated and tolerated in normal appearing human skin. Ståhl PL, Stranneheim H, Asplund A, ..., Pontén F, Lundeberg J J. Invest. Dermatol. 131 (2) 504-508 2011-02-00 2010-10-14
Studying transcriptional interactions in single cells at sufficient resolution. Wallden M, Elf J Curr. Opin. Biotechnol. 22 (1) 81-86 2011-02-00 2010-11-10
Postpartum depression symptoms: a case-control study on monoaminergic functional polymorphisms and environmental stressors. Comasco E, Sylvén SM, Papadopoulos FC, ..., Oreland L, Skalkidou A Psychiatr Genet 21 (1) 19-28 2011-02-00 2010-11-26
Genomic duplications mediate overexpression of lamin B1 in adult-onset autosomal dominant leukodystrophy (ADLD) with autonomic symptoms. Schuster J, Sundblom J, Thuresson AC, ..., Melberg A, Dahl N Neurogenetics 12 (1) 65-72 2011-02-00 2011-01-12
Advancing our understanding of functional genome organisation through studies in the fission yeast. Olsson I, Bjerling P Curr. Genet. 57 (1) 1-12 2011-02-00 2010-11-27
Spatial distribution of Na+-K+-ATPase in dendritic spines dissected by nanoscale superresolution STED microscopy. Blom H, Rönnlund D, Scott L, ..., Aperia A, Brismar H BMC Neurosci 12 (-) 16 2011-01-27 2011-01-27
miR-182-mediated downregulation of BRCA1 impacts DNA repair and sensitivity to PARP inhibitors. Moskwa P, Buffa FM, Pan Y, ..., Helleday T, Chowdhury D Mol. Cell 41 (2) 210-220 2011-01-21 2010-12-30
Spatial gradient of protein phosphorylation underlies replicative asymmetry in a bacterium Chen YE, Tropini C, Jonas K, ..., Huang KC, Laub MT Proceedings of the National Academy of Sciences 108 (3) 1052-1057 2011-01-18 2010-12-29
An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue. Sullivan PF, Allander T, Lysholm F, ..., Pedersen NL, Andersson B BMC Microbiol. 11 (-) 2 2011-01-02 2011-01-02
Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D Genome Biol Evol 3 (-) 868-880 2011-01-01 2011-08-18
Structural dependence of the efficiency of functionalization of silica-coated FeOx magnetic nanoparticles studied by ATR-IR Vargas A, Shnitko I, Teleki A, ..., Pratsinis SE, Baiker A Applied Surface Science 257 (7) 2861-2869 2011-01-00 2011-01-00
SNP variations in the 7q33 region containing DGKI are associated with dyslexia in the Finnish and German populations. Matsson H, Tammimies K, Zucchelli M, ..., Kere J, Peyrard-Janvid M Behav. Genet. 41 (1) 134-140 2011-01-00 2011-01-04
Morphology, structure and magnetic properties of cobalt–nickel films obtained from acidic electrolytes containing glycine Ergeneman O, Sivaraman KM, Pané S, ..., Baró MD, Nelson BJ Electrochimica Acta 56 (3) 1399-1408 2011-01-00 2011-01-00
Contributions of the EMERALD project to assessing and improving microarray data quality. Beisvåg V, Kauffmann A, Malone J, ..., Sandvik AK, Kuiper M BioTechniques 50 (1) 27-31 2011-01-00 2011-01-15
Anti-apoptotic Bcl-2 fails to form efficient complexes with pro-apoptotic Bak to protect from Celecoxib-induced apoptosis Rudner J, Elsaesser SJ, Jendrossek V, Huber SM Biochemical Pharmacology 81 (1) 32-42 2011-01-00 2011-01-00
LC-MS based quantification of 2′-ribosylated nucleosides Ar(p) and Gr(p) in tRNA Pearson D, Hienzsch A, Wagner M, ..., Özden D, Carell T Chem. Commun. 47 (18) 5196 2011-00-00 2011-00-00
SciLifeLab Data Centre
Publications 9.5.1