Shoaie S

Family name	Shoaie
Given name	Saeed
Initials	S
ORCID	ORCID 0000-0001-5834-4533
Affiliations

PubMed DOI Crossref

Microbial collagenase activity is linked to oral-gut translocation in advanced chronic liver disease.

Jin S, Cenier A, Wetzel D, ..., Patel VC, Schirmer M

Nat. Microbiol 11 (1) 211-227 [2026-01-00; online 2025-12-29]

DOI Crossref

Enhanced Computational and Experimental Approaches for Comparative Analysis of the Human Mycobiome

Begum N, Lee S, Almeida M, ..., Shoiae S, Moyes DL

- - (-) - [2025-02-09; online 2025-02-09]

DOI Crossref

Fungal infection drives metabolic reprogramming in epithelial cells via aerobic glycolysis and an alternative TCA cycle shunt

Pellon A, Nasab SDS, Bidkhori G, ..., Shoaie S, Moyes D

- - (-) - [2022-11-01; online 2022-11-01]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Integrative functional analysis uncovers metabolic differences between Candida species.

Begum N, Lee S, Portlock TJ, ..., Moyes DL, Shoaie S

Commun Biol 5 (1) 1013 [2022-09-26; online 2022-09-26]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Host-mycobiome metabolic interactions in health and disease.

Begum N, Harzandi A, Lee S, ..., Moyes DL, Shoaie S

Gut Microbes 14 (1) 2121576 [2022-09-25; online 2022-09-25]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Rifaximin-α reduces gut-derived inflammation and mucin degradation in cirrhosis and encephalopathy: RIFSYS randomised controlled trial.

Patel VC, Lee S, McPhail MJW, ..., Shoaie S, Shawcross DL

J Hepatol 76 (2) 332-342 [2022-02-00; online 2021-09-24]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Transient Colonising Microbes Promote Gut Dysbiosis and Disease Pathology

Lee S, Meslier V, Bidkhori G, ..., Uhlen M, Shoaie S

- - (-) - [2022-00-00; online 2022-00-00]

PubMed DOI Crossref

Comparative Genomics Analysis of Keratin-Degrading Chryseobacterium Species Reveals Their Keratinolytic Potential for Secondary Metabolite Production

Kang D, Shoaie S, Jacquiod S, Sørensen SJ, Ledesma-Amaro R

Microorganisms 9 (5) 1042 [2021-05-12; online 2021-05-12]

Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Global and temporal state of the human gut microbiome in health and disease

Shoaie S, Lee S, Almeida M, ..., Ehrlich S, Uhlen M

- - (-) - [2021-04-01; online 2021-04-01]

PubMed DOI Crossref

Systematic analysis of gut microbiome reveals the role of bacterial folate and homocysteine metabolism in Parkinson’s disease

Rosario D, Bidkhori G, Lee S, ..., Mardinoglu A, Shoaie S

Cell Reports 34 (9) 108807 [2021-03-00; online 2021-03-00]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Acute kidney injury leading to CKD is associated with a persistence of metabolic dysfunction and hypertriglyceridemia

Harzandi A, Lee S, Bidkhori G, ..., Shoaie S, Sharpe CC

iScience 24 (2) 102046 [2021-02-00; online 2021-02-00]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

A systems biology approach for studying neurodegenerative diseases.

Lam S, Bayraktar A, Zhang C, ..., Uhlen M, Mardinoglu A

Drug Discov. Today 25 (7) 1146-1159 [2020-07-00; online 2020-05-19]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing.

Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C

Nat. Biotechnol. 38 (4) 504 [2020-04-00; online 2020-04-09]

PubMed DOI Crossref

MEMOTE for standardized genome-scale metabolic model testing.

Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C

Nat. Biotechnol. 38 (3) 272-276 [2020-03-00; online 2020-03-04]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

Abundance and diversity of resistomes differ between healthy human oral cavities and gut.

Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL

Nat Commun 11 (1) 693 [2020-02-04; online 2020-02-04]

Saeed Shoaie SciLifeLab Fellow

PubMed DOI Crossref

The gut microbiota modulates host amino acid and glutathione metabolism in mice

Mardinoglu A, Shoaie S, Bergentall M, ..., Bäckhed F, Nielsen J

Mol Syst Biol 11 (10) 834 [2015-10-00; online 2015-10-16]

Adil Mardinoglu SciLifeLab Fellow

PubMed DOI Crossref

Quantifying Diet-Induced Metabolic Changes of the Human Gut Microbiome.

Shoaie S, Ghaffari P, Kovatcheva-Datchary P, ..., Bäckhed F, Nielsen J

Cell Metab. 22 (2) 320-331 [2015-08-04; online 2015-08-06]

Adil Mardinoglu SciLifeLab Fellow

Shoaie S

17 publications