Lundberg E

Family name	Lundberg
Given name	Emma
Initials	E
ORCID	ORCID 0000-0001-7034-0850
Affiliations	Department of Protein Science, Science for Life Laboratory, KTH–Royal Institute of Technology, Stockholm, Sweden.

34 publications

PubMed DOI Crossref

Multimodal cell maps as a foundation for structural and functional genomics.

Schaffer LV, Hu M, Qian G, ..., Lundberg E, Ideker T

Nature 642 (8066) 222-231 [2025-06-00; online 2025-04-09]

PubMed DOI Crossref

Cell shapes decode molecular phenotypes in image-based spatial proteomics.

Le T, Leineweber WD, Viana MP, ..., Rafelski SM, Lundberg E

bioRxiv - (-) - [2025-05-16; online 2025-05-16]

DDLS Fellow Wei Ouyang

DOI Crossref

Multiplexed Deep Visual Proteomics Unveils Spatial Heterogeneity and Rare Endocrine States in Human Adult Pancreatic Islets

Mardamshina M, Dorka N, Thielert M, ..., Mann M, Lundberg E

- - (-) - [2025-04-27; online 2025-04-27]

PubMed DOI Crossref

Enabling global image data sharing in the life sciences.

Bajcsy P, Bhattiprolu S, Börner K, ..., Taylor A, Keppler A

Nat. Methods 22 (4) 672-676 [2025-04-00; online 2025-03-28]

PubMed DOI Crossref

Flexible and robust cell type annotation for highly multiplexed tissue images.

Sun H, Yu S, Casals AM, ..., Lundberg E, Murphy RF

bioRxiv - (-) - [2024-12-17; online 2024-12-17]

PubMed DOI Crossref

Open-source, high-throughput targeted in situ transcriptomics for developmental and tissue biology.

Lee H, Langseth CM, Salas SM, ..., Grillo M, Nilsson M

Development 151 (16) - [2024-08-15; online 2024-08-29]

DOI Crossref

Spatial Dynamics of the Developing Human Heart

Lázár E, Mauron R, Andrusivová Ž, ..., Adameyko I, Lundeberg J

- - (-) - [2024-03-14; online 2024-03-14]

DOI Crossref

A high-resolution spatial map of cilia-associated proteins based on characterization of the human fallopian tube-specific proteome

Lindskog C, Norradin FH, Digre A, ..., Hansen J, Uhlén M

- - (-) - [2024-02-09; online 2024-02-09]

DOI Crossref

High-parametric protein maps reveal the spatial organization in early-developing human lung

Sariyar S, Sountoulidis A, Hansen JN, ..., Lundberg E, Ayoglu B

- - (-) - [2024-01-25; online 2024-01-25]

PubMed DOI Crossref

Segmenting functional tissue units across human organs using community-driven development of generalizable machine learning algorithms.

Jain Y, Godwin LL, Joshi S, ..., Lundberg E, Börner K

Nat Commun 14 (1) 4656 [2023-08-03; online 2023-08-03]

PubMed DOI Crossref

Organ Mapping Antibody Panels: a community resource for standardized multiplexed tissue imaging.

Quardokus EM, Saunders DC, McDonough E, ..., Börner K, Radtke AJ

Nat. Methods 20 (8) 1174-1178 [2023-08-00; online 2023-07-19]

DOI Crossref

ISG15-modification of the Arp2/3 complex restricts pathogen spread

Zhang Y, Ripley B, Ouyang W, ..., Guerra S, Radoshevich L

- - (-) - [2022-12-27; online 2022-12-27]

DOI Crossref

Uncovering molecular grammars of intrinsically disordered regions that organize nucleolar fibrillar centers

King MR, Lin AZ, Ruff KM, ..., Lundberg E, Pappu RV

- - (-) - [2022-11-05; online 2022-11-05]

DOI Crossref

Spatiotemporal dynamics of DNA repair proteins between the Golgi and nucleus maintain genomic stability

Galea G, Kuodyte K, Khan MM, ..., Lundberg E, Pepperkok R

- - (-) - [2022-10-17; online 2022-10-17]

PubMed DOI Crossref

Analysis of the Human Protein Atlas Weakly Supervised Single-Cell Classification competition.

Le T, Winsnes CF, Axelsson U, ..., Ouyang W, Lundberg E

Nat. Methods 19 (10) 1221-1229 [2022-10-00; online 2022-09-29]

PubMed DOI Crossref

Author Correction: Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.

Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E

Nature 608 (7924) E32 [2022-08-00; online 2022-08-06]

Adil Mardinoglu SciLifeLab Fellow

PubMed DOI Crossref

Understudied proteins: opportunities and challenges for functional proteomics.

Kustatscher G, Collins T, Gingras AC, ..., Ralser M, Rappsilber J

Nat. Methods 19 (7) 774-779 [2022-07-00; online 2022-05-10]

PubMed DOI Crossref

An open invitation to the Understudied Proteins Initiative.

Kustatscher G, Collins T, Gingras AC, ..., Ralser M, Rappsilber J

Nat. Biotechnol. 40 (6) 815-817 [2022-06-00; online 2022-05-10]

DOI Crossref

Deconwolf enables high-performance deconvolution of widefield fluorescence microscopy images

Wernersson E, Gelali E, Girelli G, ..., Crosetto N, Bienko M

- - (-) - [2022-02-02; online 2022-02-02]

PubMed DOI Crossref

The Blood Proteoform Atlas: A reference map of proteoforms in human hematopoietic cells.

Melani RD, Gerbasi VR, Anderson LC, ..., Levitsky J, Kelleher NL

Science (New York, N.Y.) 375 (6579) 411-418 [2022-01-28; online 2022-01-27]

PubMed DOI Crossref

DeepImageJ: A user-friendly environment to run deep learning models in ImageJ.

Gómez-de-Mariscal E, García-López-de-Haro C, Ouyang W, ..., Muñoz-Barrutia A, Sage D

Nat. Methods 18 (10) 1192-1195 [2021-10-00; online 2021-09-30]

PubMed DOI Crossref

Pycro-Manager: open-source software for customized and reproducible microscope control.

Pinkard H, Stuurman N, Ivanov IE, ..., Mehta SB, Waller L

Nat. Methods 18 (3) 226-228 [2021-03-00; online 2021-03-07]

PubMed DOI Crossref

Spatiotemporal dissection of the cell cycle with single-cell proteogenomics.

Mahdessian D, Cesnik AJ, Gnann C, ..., Sullivan DP, Lundberg E

Nature 590 (7847) 649-654 [2021-02-00; online 2021-02-24]

Adil Mardinoglu SciLifeLab Fellow

PubMed DOI Crossref

Spatial Characterization of the Human Centrosome Proteome Opens Up New Horizons for a Small but Versatile Organelle.

Danielsson F, Mahdessian D, Axelsson U, ..., Thul PJ, Lundberg E

Proteomics 20 (23) e1900361 [2020-12-00; online 2020-08-26]

PubMed DOI Crossref

Author Correction: Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, ..., Kappel C, Lundberg E

Nat. Methods 17 (9) 948 [2020-09-00; online 2020-08-08]

PubMed DOI Crossref

Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder.

Stenström L, Mahdessian D, Gnann C, ..., Thul PJ, Lundberg E

Mol Syst Biol 16 (8) e9469 [2020-08-00; online 2020-08-04]

DOI Crossref

Mapping cell structure across scales by fusing protein images and interactions

Qin Y, Winsnes CF, Huttlin EL, ..., Lundberg E, Ideker T

- - (-) - [2020-06-22; online 2020-06-22]

PubMed DOI Crossref

Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, ..., Kappel C, Lundberg E

Nat. Methods 17 (2) 241 [2020-02-00; online 2020-01-24]

DOI Crossref

Mapping the nucleolar proteome reveals a spatiotemporal organization related to intrinsic protein disorder

Stenström L, Mahdessian D, Gnann C, ..., Thul PJ, Lundberg E

- - (-) - [2020-01-30; online 2020-01-30]

PubMed DOI Crossref

Publisher Correction: Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, ..., Kappel C, Lundberg E

Nat. Methods 17 (1) 115 [2020-01-00; online 2019-12-12]

PubMed DOI Crossref

Analysis of the Human Protein Atlas Image Classification competition.

Ouyang W, Winsnes CF, Hjelmare M, ..., Kappel C, Lundberg E

Nat. Methods 16 (12) 1254-1261 [2019-12-00; online 2019-11-28]

PubMed DOI Crossref

The human secretome.

Uhlén M, Karlsson MJ, Hober A, ..., Fagerberg L, Sivertsson Å

Sci Signal 12 (609) eaaz0274 [2019-11-26; online 2019-11-26]

Adil Mardinoglu SciLifeLab Fellow

PubMed DOI Crossref

A pathology atlas of the human cancer transcriptome.

Uhlen M, Zhang C, Lee S, ..., Mardinoglu A, Ponten F

Science (New York, N.Y.) 357 (6352) eaan2507 [2017-08-18; online 2017-08-19]

Adil Mardinoglu Affiliated researcher SciLifeLab Fellow

PubMed DOI Crossref

A subcellular map of the human proteome.

Thul PJ, Åkesson L, Wiking M, ..., Uhlén M, Lundberg E

Science (New York, N.Y.) 356 (6340) eaal3321 [2017-05-26; online 2017-05-11]

Adil Mardinoglu Affiliated researcher SciLifeLab Fellow