Chen X

Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data

Li T, Yang Q, Acs B, ..., Chen X, Hartman J

NPJ Precis Oncol 9 (1) 310 [2025-09-09; online 2025-09-09]

Camilla Engblom SciLifeLab Fellow

Author Correction: Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.

Shafighi S, Geras A, Jurzysta B, ..., Lagergren J, Szczurek E

Nat Commun 16 (1) 2801 [2025-03-21; online 2025-03-21]

Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.

Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y

J. Clin. Invest. 134 (21) - [2024-09-10; online 2024-09-10]

CopyVAE: a variational autoencoder-based approach for copy number variation inference using single-cell transcriptomics.

Kurt S, Chen M, Toosi H, ..., Hartman J, Lagergren J

Bioinformatics 40 (5) - [2024-05-02; online 2024-04-28]

Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.

Jun SH, Toosi H, Mold J, ..., Roth A, Lagergren J

Nat Commun 14 (1) 982 [2023-02-22; online 2023-02-22]

Camilla Engblom SciLifeLab Fellow

Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue

Engblom C, Thrane K, Lin Q, ..., Lundeberg J, Frisén J

- - (-) - [2022-11-24; online 2022-11-24]

Camilla Engblom SciLifeLab Fellow

Tumoroscope: a probabilistic model for mapping cancer clones in tumor tissues

Shafighi SD, Geras A, Jurzysta B, ..., Lagergren J, Szczurek E

- - (-) - [2022-09-23; online 2022-09-23]

A2B adenosine receptor antagonists rescue lymphocyte activity in adenosine-producing patient-derived cancer models.

Tay AHM, Prieto-Díaz R, Neo S, ..., Sotelo E, Lundqvist A

J Immunother Cancer 10 (5) - [2022-05-00; online 2022-05-18]