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Avlant Nilsson
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Primary
: Shown in the list of current labels.
Year 2025
PubMed
DOI
Crossref
Towards an interpretable deep learning model of cancer.
Nilsson A
,
Meimetis N
,
Lauffenburger DA
NPJ Precis Oncol
9
(1) 46 [2025-02-14; online 2025-02-14]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.
Meimetis N
,
Lauffenburger DA
,
Nilsson A
STAR Protoc
6
(1) 103573 [2025-01-16; online 2025-01-16]
Avlant Nilsson
DDLS Fellow
Year 2024
PubMed
DOI
Crossref
Author Correction: AutoTransOP: translating omics signatures without orthologue requirements using deep learning.
Meimetis N
,
Pullen KM
, Zhu DY, ..., Magliacane S,
Lauffenburger DA
NPJ Syst Biol Appl
10
(1) 148 [2024-12-13; online 2024-12-13]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Inference of drug off-target effects on cellular signaling using interactome-based deep learning.
Meimetis N
,
Lauffenburger DA
,
Nilsson A
iScience
27
(4) 109509 [2024-04-19; online 2024-03-14]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
AutoTransOP: translating omics signatures without orthologue requirements using deep learning.
Meimetis N
,
Pullen KM
, Zhu DY, ..., Magliacane S,
Lauffenburger DA
NPJ Syst Biol Appl
10
(1) 13 [2024-01-29; online 2024-01-29]
Avlant Nilsson
DDLS Fellow
Year 2023
DOI
Crossref
Autoencoder Model for Translating Omics Signatures
Meimetis N
,
Pullen KM
, Zhu DY, ..., Magliacane S,
Lauffenburger DA
-
-
(-) - [2023-06-11; online 2023-06-11]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Antibodies against the Ebola virus soluble glycoprotein are associated with long-term vaccine-mediated protection of non-human primates.
Gunn BM, McNamara RP, Wood L, ..., Simon JK, Alter G
Cell Reports
42
(4) 112402 [2023-04-25; online 2023-04-15]
Avlant Nilsson
DDLS Fellow
Year 2022
PubMed
DOI
Crossref
Artificial neural networks enable genome-scale simulations of intracellular signaling.
Nilsson A
,
Peters JM
,
Meimetis N
,
Bryson B
,
Lauffenburger DA
Nat Commun
13
(1) 3069 [2022-06-02; online 2022-06-02]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Cancer-Associated Fibroblasts and Squamous Epithelial Cells Constitute a Unique Microenvironment in a Mouse Model of Inflammation-Induced Colon Cancer.
Vega PN,
Nilsson A
, Kumar MP, ...,
Lauffenburger DA
, Lau KS
Front Oncol
12
(-) 878920 [2022-05-04; online 2022-05-04]
Avlant Nilsson
DDLS Fellow
Year 2020
PubMed
DOI
Crossref
Quantitative analysis of amino acid metabolism in liver cancer links glutamate excretion to nucleotide synthesis.
Nilsson A
,
Haanstra JR
,
Engqvist M
, ...,
Teusink B
,
Nielsen J
Proc. Natl. Acad. Sci. U.S.A.
117
(19) 10294-10304 [2020-05-12; online 2020-04-27]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
An atlas of human metabolism.
Robinson JL
,
Kocabaş P
,
Wang H
, ...,
Uhlén M
,
Nielsen J
Sci Signal
13
(624) eaaz1482 [2020-03-24; online 2020-03-24]
Adil Mardinoglu
Avlant Nilsson
SciLifeLab Fellow
Year 2019
PubMed
DOI
Crossref
Complex I is bypassed during high intensity exercise.
Nilsson A
,
Björnson E
,
Flockhart M
,
Larsen FJ
,
Nielsen J
Nat Commun
10
(1) 5072 [2019-11-07; online 2019-11-07]
Avlant Nilsson
DDLS Fellow
Year 2018
PubMed
DOI
Crossref
Metabolite Depletion Affects Flux Profiling of Cell Lines.
Nilsson A
,
Haanstra JR
,
Teusink B
,
Nielsen J
Trends Biochem. Sci.
43
(6) 395-397 [2018-06-00; online 2018-04-12]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Recon3D enables a three-dimensional view of gene variation in human metabolism.
Brunk E
, Sahoo S, Zielinski DC, ...,
Thiele I
,
Palsson BO
Nat. Biotechnol.
36
(3) 272-281 [2018-03-00; online 2018-02-19]
Avlant Nilsson
DDLS Fellow
Year 2017
PubMed
DOI
Crossref
Metabolic Models of Protein Allocation Call for the Kinetome.
Nilsson A
,
Nielsen J
,
Palsson BO
Cell Systems
5
(6) 538-541 [2017-12-27; online 2017-12-29]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Genome scale metabolic modeling of cancer.
Nilsson A
,
Nielsen J
Metab. Eng.
43
(Pt B) 103-112 [2017-09-00; online 2016-11-04]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
Improving the phenotype predictions of a yeast genome-scale metabolic model by incorporating enzymatic constraints.
Sánchez BJ
,
Zhang C
,
Nilsson A
, ...,
Kerkhoven EJ
,
Nielsen J
Mol Syst Biol
13
(8) 935 [2017-08-03; online 2017-08-03]
Affiliated researcher
Avlant Nilsson
PubMed
DOI
Crossref
Predicting growth of the healthy infant using a genome scale metabolic model.
Nilsson A
,
Mardinoglu A
,
Nielsen J
NPJ Syst Biol Appl
3
(1) 3 [2017-01-31; online 2017-01-31]
Adil Mardinoglu
Avlant Nilsson
SciLifeLab Fellow
Year 2016
PubMed
DOI
Crossref
Metabolic Trade-offs in Yeast are Caused by F1F0-ATP synthase.
Nilsson A
,
Nielsen J
Sci Rep
6
(-) 22264 [2016-03-01; online 2016-03-01]
Avlant Nilsson
DDLS Fellow
Year 2014
PubMed
DOI
Crossref
A dedicated database system for handling multi-level data in systems biology.
Pornputtapong N, Wanichthanarak K,
Nilsson A
, Nookaew I,
Nielsen J
Source Code Biol Med
9
(-) 17 [2014-07-10; online 2014-07-10]
Avlant Nilsson
DDLS Fellow
PubMed
DOI
Crossref
BioMet Toolbox 2.0: genome-wide analysis of metabolism and omics data.
Garcia-Albornoz M, Thankaswamy-Kosalai S,
Nilsson A
, ..., Nookaew I,
Nielsen J
Nucleic Acids Res.
42
(Web Server issue) W175-W181 [2014-07-00; online 2014-05-03]
Avlant Nilsson
DDLS Fellow
SciLifeLab Data Centre
Publications
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