Sahlin K

Improved sub-genomic RNA prediction with the ARTIC protocol.

Baudeau T, Sahlin K

Nucleic Acids Res. 52 (17) e82 [2024-09-23; online 2024-08-16]

Kristoffer Sahlin SciLifeLab Fellow

Designing efficient randstrobes for sequence similarity analyses.

Karami M, Soltani Mohammadi A, Martin M, ..., Patro R, Sahlin K

Bioinformatics 40 (4) - [2024-03-29; online 2024-04-05]

Kristoffer Sahlin SciLifeLab Fellow

Efficient mapping of accurate long reads in minimizer space with mapquik.

Ekim B, Sahlin K, Medvedev P, Berger B, Chikhi R

Genome Res 33 (7) 1188-1197 [2023-07-00; online 2023-06-30]

Kristoffer Sahlin SciLifeLab Fellow

Entropy predicts sensitivity of pseudorandom seeds.

Maier BD, Sahlin K

Genome Res 33 (7) 1162-1174 [2023-07-00; online 2023-05-22]

Kristoffer Sahlin SciLifeLab Fellow

isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.

Petri AJ, Sahlin K

Bioinformatics 39 (39 Suppl 1) i222-i231 [2023-06-30; online 2023-06-30]

Kristoffer Sahlin SciLifeLab Fellow

Strobealign: flexible seed size enables ultra-fast and accurate read alignment.

Sahlin K

Genome Biol. 23 (1) 260 [2022-12-15; online 2022-12-15]

Kristoffer Sahlin SciLifeLab Fellow

Rapid in situ identification of biological specimens via DNA amplicon sequencing using miniaturized laboratory equipment.

Pomerantz A, Sahlin K, Vasiljevic N, ..., Ogden R, Prost S

Nat Protoc 17 (6) 1415-1443 [2022-06-00; online 2022-04-11]

Kristoffer Sahlin SciLifeLab Fellow

Accurate spliced alignment of long RNA sequencing reads

Sahlin K, Mäkinen V

Bioinformatics 37 (24) 4643-4651 [2021-12-11; online 2021-07-24]

Kristoffer Sahlin SciLifeLab Fellow

Effective sequence similarity detection with strobemers

Sahlin K

Genome Res. 31 (11) 2080-2094 [2021-11-00; online 2021-10-19]

Kristoffer Sahlin SciLifeLab Fellow

NGSpeciesID: DNA barcode and amplicon consensus generation from long-read sequencing data.

Sahlin K, Lim MCW, Prost S

Ecol Evol 11 (3) 1392-1398 [2021-02-00; online 2021-01-11]

Kristoffer Sahlin SciLifeLab Fellow

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis.

Sahlin K, Medvedev P

Nat Commun 12 (1) 2 [2021-01-04; online 2021-01-04]

Kristoffer Sahlin SciLifeLab Fellow