Magda Bienko

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SciLifeLab Fellow since 2015.

Primary: Shown in the list of current labels.

Year 2023

PubMed DOI Crossref
How Hi-C ignited the era of 3D genome biology.
Bienko M
Nat. Rev. Genet. 24 (7) 418 [2023-07-00; online 2023-02-03]
Magda Bienko
PubMed DOI Crossref
A GC-centered view of 3D genome organization.
Bouwman BA, Crosetto N, Bienko M
Curr. Opin. Genet. Dev. 78 (-) 102020 [2023-02-00; online 2023-01-05]
Magda Bienko

Year 2022

PubMed DOI Crossref
Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases.
Nicoś M, Harbers L, Patrucco E, ..., Ambrogio C, Crosetto N
JTO Clin Res Rep 3 (12) 100435 [2022-12-00; online 2022-11-11]
Magda Bienko
PubMed DOI Crossref
FRET-FISH probes chromatin compaction at individual genomic loci in single cells.
Mota A, Berezicki S, Wernersson E, ..., Crosetto N, Bienko M
Nat Commun 13 (1) 6680 [2022-11-05; online 2022-11-05]
Magda Bienko
PubMed DOI Crossref
An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.
Ballarino R, Bouwman BAM, Agostini F, ..., Bienko M, Crosetto N
Sci Data 9 (1) 400 [2022-07-12; online 2022-07-12]
Magda Bienko
PubMed DOI Crossref
Simultaneous visualization of DNA loci in single cells by combinatorial multi-color iFISH.
Mota A, Schweitzer M, Wernersson E, Crosetto N, Bienko M
Sci Data 9 (1) 47 [2022-02-10; online 2022-02-10]
Magda Bienko
PubMed DOI Crossref
RNA gradients: Shapers of 3D genome architecture.
Bouwman BAM, Crosetto N, Bienko M
Curr Opin Cell Biol 74 (-) 7-12 [2022-02-00; online 2022-01-05]
Magda Bienko

Year 2021

PubMed DOI Crossref
Somatic Copy Number Alterations in Human Cancers: An Analysis of Publicly Available Data From The Cancer Genome Atlas.
Harbers L, Agostini F, Nicos M, ..., Bienko M, Crosetto N
Front Oncol 11 (-) 700568 [2021-07-28; online 2021-07-28]
Magda Bienko
PubMed DOI Crossref
COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance.
Simonetti M, Zhang N, Harbers L, ..., Ghisetti V, Crosetto N
Nat Commun 12 (1) 3903 [2021-06-23; online 2021-06-23]
Magda Bienko

Year 2020

PubMed DOI Crossref
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.
Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N
Nat Protoc 15 (12) 3894-3941 [2020-12-00; online 2020-11-02]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.
Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR
Nat Commun 11 (1) 5445 [2020-10-28; online 2020-10-28]
Magda Bienko Marc Friedländer SciLifeLab Fellow
PubMed DOI Crossref
GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M
Nat. Biotechnol. 38 (10) 1184-1193 [2020-10-00; online 2020-05-25]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Radial Organization in the Mammalian Nucleus.
Crosetto N, Bienko M
Front Genet 11 (-) 33 [2020-02-12; online 2020-02-12]
Magda Bienko SciLifeLab Fellow

Year 2019

PubMed DOI Crossref
A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.
Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N
Nat Commun 10 (1) 4732 [2019-10-18; online 2019-10-18]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Human skin long noncoding RNA WAKMAR1 regulates wound healing by enhancing keratinocyte migration.
Li D, Kular L, Vij M, ..., Jagodic M, Landén NX
Proc. Natl. Acad. Sci. U.S.A. 116 (19) 9443-9452 [2019-05-07; online 2019-04-24]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.
Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M
Nat Commun 10 (1) 1636 [2019-04-09; online 2019-04-09]
Magda Bienko SciLifeLab Fellow

Year 2018

PubMed DOI Crossref
RollFISH achieves robust quantification of single-molecule RNA biomarkers in paraffin-embedded tumor tissue samples.
Wu C, Simonetti M, Rossell C, ..., Crosetto N, Nilsson M
Commun Biol 1 (1) 209 [2018-11-28; online 2018-11-28]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Gelali E, Custodio J, Girelli G, ..., Crosetto N, Bienko M
Methods in molecular biology (Clifton, N.J.) 1766 (-) 303-333 [2018-04-02; online 2018-04-02]
Magda Bienko SciLifeLab Fellow

Year 2017

PubMed DOI Crossref
Genome-Wide Profiling of DNA Double-Strand Breaks by the BLESS and BLISS Methods.
Mirzazadeh R, Kallas T, Bienko M, Crosetto N
Methods in molecular biology (Clifton, N.J.) 1672 (-) 167-194 [2017-10-19; online 2017-10-19]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
BLISS is a versatile and quantitative method for genome-wide profiling of DNA double-strand breaks.
Yan WX, Mirzazadeh R, Garnerone S, ..., Bienko M, Crosetto N
Nat Commun 8 (1) 15058 [2017-05-12; online 2017-05-12]
Affiliated researcher Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization.
Annaratone L, Simonetti M, Wernersson E, ..., Sapino A, Crosetto N
Oncotarget 8 (12) 18680-18698 [2017-03-21; online 2017-04-21]
Magda Bienko SciLifeLab Fellow

Year 2016

PubMed DOI Crossref
Massive and parallel expression profiling using microarrayed single-cell sequencing.
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (1) 13182 [2016-10-14; online 2016-10-14]
Affiliated researcher Magda Bienko Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Skeletal response to diet with soya bean seeds used as primary source of protein in growing broiler chickens.
Olkowski B, Charuta A, Radzki R, Bieńko M, Toczko R
Journal of animal physiology and animal nutrition 100 (4) 731-737 [2016-08-00; online 2016-02-08]
Magda Bienko SciLifeLab Fellow

Year 2015

PubMed DOI Crossref
Genome-wide maps of nuclear lamina interactions in single human cells.
Kind J, Pagie L, de Vries SS, ..., van Oudenaarden A, van Steensel B
Cell 163 (1) 134-147 [2015-09-24; online 2015-09-10]
Affiliated researcher Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Integrated genome and transcriptome sequencing of the same cell.
Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A
Nat. Biotechnol. 33 (3) 285-289 [2015-03-00; online 2015-01-19]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Spatially resolved transcriptomics and beyond.
Crosetto N, Bienko M, van Oudenaarden A
Nat. Rev. Genet. 16 (1) 57-66 [2015-01-00; online 2014-12-02]
Affiliated researcher Magda Bienko SciLifeLab Fellow

Year 2014

PubMed DOI Crossref
FuseFISH: Robust Detection of Transcribed Gene Fusions in Single Cells
Semrau S, Crosetto N, Bienko M, ..., Chiarle R, van Oudenaarden A
Cell Reports 6 (1) 18-23 [2014-01-00; online 2014-01-00]
Magda Bienko SciLifeLab Fellow

Year 2013

PubMed DOI Crossref
Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing.
Crosetto N, Mitra A, Silva MJ, ..., Rowicka M, Dikic I
Nat. Methods 10 (4) 361-365 [2013-04-00; online 2013-03-17]
Affiliated researcher Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH
Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A
Nat Methods 10 (2) 122-124 [2013-02-00; online 2012-12-23]
Magda Bienko SciLifeLab Fellow

Year 2010

PubMed DOI Crossref
Unconventional Ubiquitin Recognition by the Ubiquitin-Binding Motif within the Y Family DNA Polymerases ι and Rev1
Bomar MG, D'Souza S, Bienko M, ..., Walker GC, Zhou P
Molecular Cell 37 (3) 408-417 [2010-02-00; online 2010-02-00]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Regulation of Translesion Synthesis DNA Polymerase η by Monoubiquitination
Bienko M, Green CM, Sabbioneda S, ..., Lehmann AR, Dikic I
Molecular Cell 37 (3) 396-407 [2010-02-00; online 2010-02-00]
Magda Bienko SciLifeLab Fellow

Year 2009

PubMed DOI Crossref
Ubiquitin-binding motif of human DNA polymerase eta is required for correct localization.
Sabbioneda S, Green CM, Bienko M, ..., Dikic I, Lehmann AR
Proc. Natl. Acad. Sci. U.S.A. 106 (8) E20; author reply E21 [2009-02-24; online 2009-02-26]
Magda Bienko SciLifeLab Fellow

Year 2008

PubMed DOI Crossref
Human Wrnip1 is localized in replication factories in a ubiquitin-binding zinc finger-dependent manner.
Crosetto N, Bienko M, Hibbert RG, ..., Sixma TK, Dikic I
J. Biol. Chem. 283 (50) 35173-35185 [2008-12-12; online 2008-10-07]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Requirements for the interaction of mouse Polkappa with ubiquitin and its biological significance.
Guo C, Tang TS, Bienko M, Dikic I, Friedberg EC
J. Biol. Chem. 283 (8) 4658-4664 [2008-02-22; online 2007-12-26]
Magda Bienko SciLifeLab Fellow

Year 2006

PubMed DOI Crossref
Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage.
Guo C, Tang TS, Bienko M, ..., Dikic I, Friedberg EC
Molecular and Cellular Biology 26 (23) 8892-8900 [2006-12-00; online 2006-09-18]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Ubiquitin hubs in oncogenic networks.
Crosetto N, Bienko M, Dikic I
Molecular cancer research : MCR 4 (12) 899-904 [2006-12-00; online 2006-12-26]
Magda Bienko SciLifeLab Fellow

Year 2005

PubMed DOI Crossref
Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis.
Bienko M, Green CM, Crosetto N, ..., Hofmann K, Dikic I
Science (New York, N.Y.) 310 (5755) 1821-1824 [2005-12-16; online 2005-12-17]
Magda Bienko SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1