Magda Bienko

29 publications

Year 2020

Genome-wide detection of DNA double-strand breaks by in-suspension BLISS.
Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N
pii: 10.1038/s41596-020-0397-2
Nat Protoc - (-) - [2020-11-02; online 2020-11-02]
Magda Bienko
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells.
Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR
pii: 10.1038/s41467-020-19011-5
Nat Commun 11 (1) 5445 [2020-10-28; online 2020-10-28]
Magda Bienko Marc Friedländer
GPSeq reveals the radial organization of chromatin in the cell nucleus.
Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M
pii: 10.1038/s41587-020-0519-y
Nat. Biotechnol. 38 (10) 1184-1193 [2020-10-00; online 2020-05-25]
Magda Bienko

Year 2019

A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart.
Asp M, Giacomello S, Larsson L, ..., Sylvén C, Lundeberg J
pii: S0092-8674(19)31282-6
Cell 179 (7) 1647-1660.e19 [2019-12-12; online 2019-12-14]
Magda Bienko
CUTseq is a versatile method for preparing multiplexed DNA sequencing libraries from low-input samples.
Zhang X, Garnerone S, Simonetti M, ..., Bienko M, Crosetto N
pii: 10.1038/s41467-019-12570-2 pmc: PMC6802095
Nat Commun 10 (1) 4732 [2019-10-18; online 2019-10-18]
Magda Bienko
iFISH is a publically available resource enabling versatile DNA FISH to study genome architecture.
Gelali E, Girelli G, Matsumoto M, ..., Crosetto N, Bienko M
pii: 10.1038/s41467-019-09616-w pmc: PMC6456570
Nat Commun 10 (1) 1636 [2019-04-09; online 2019-04-09]
Magda Bienko

Year 2018

An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.
Gelali E, Custodio J, Girelli G, ..., Crosetto N, Bienko M
Methods in molecular biology (Clifton, N.J.) 1766 (-) 303-333 [2018-04-02; online 2018-04-02]
Magda Bienko

Year 2017

Quantification of HER2 and estrogen receptor heterogeneity in breast cancer by single-molecule RNA fluorescence in situ hybridization.
Annaratone L, Simonetti M, Wernersson E, ..., Sapino A, Crosetto N
pii: 15727 pmc: PMC5386639
Oncotarget 8 (12) 18680-18698 [2017-03-21; online 2017-04-21]
Magda Bienko

Year 2016

Massive and parallel expression profiling using microarrayed single-cell sequencing
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (1) - [2016-12-00; online 2016-10-14]
Affiliated researcher Magda Bienko

Year 2015

Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells
Kind J, Pagie L, de Vries SS, ..., van Oudenaarden A, van Steensel B
Cell 163 (1) 134-147 [2015-09-00; online 2015-09-00]
Affiliated researcher Magda Bienko
Integrated genome and transcriptome sequencing of the same cell
Dey SS, Kester L, Spanjaard B, Bienko M, van Oudenaarden A
Nat Biotechnol 33 (3) 285-289 [2015-03-00; online 2015-01-19]
Magda Bienko
Spatially resolved transcriptomics and beyond
Crosetto N, Bienko M, van Oudenaarden A
Nat Rev Genet 16 (1) 57-66 [2015-01-00; online 2014-12-02]
Affiliated researcher Magda Bienko

Year 2014

FuseFISH: Robust Detection of Transcribed Gene Fusions in Single Cells
Semrau S, Crosetto N, Bienko M, ..., Chiarle R, van Oudenaarden A
Cell Reports 6 (1) 18-23 [2014-01-00; online 2014-01-00]
Magda Bienko

Year 2013

A versatile genome-scale PCR-based pipeline for high-definition DNA FISH
Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A
Nat Methods 10 (2) 122-124 [2013-02-00; online 2012-12-23]
Magda Bienko

Year 2010

Regulation of Translesion Synthesis DNA Polymerase η by Monoubiquitination
Bienko M, Green CM, Sabbioneda S, ..., Lehmann AR, Dikic I
Molecular Cell 37 (3) 396-407 [2010-02-00; online 2010-02-00]
Magda Bienko

Year 2009

Ubiquitin-binding motif of human DNA polymerase eta is required for correct localization.
Sabbioneda S, Green CM, Bienko M, ..., Dikic I, Lehmann AR
pii: 106/8/E20 pmc: PMC2650340
Proc. Natl. Acad. Sci. U.S.A. 106 (8) E20; author reply E21 [2009-02-24; online 2009-02-26]
Magda Bienko

Year 2008

Human Wrnip1 is localized in replication factories in a ubiquitin-binding zinc finger-dependent manner.
Crosetto N, Bienko M, Hibbert RG, ..., Sixma TK, Dikic I
pii: M803219200 pmc: PMC3259897
J. Biol. Chem. 283 (50) 35173-35185 [2008-12-12; online 2008-10-07]
Magda Bienko
Requirements for the interaction of mouse Polkappa with ubiquitin and its biological significance.
Guo C, Tang TS, Bienko M, Dikic I, Friedberg EC
pii: M709275200
J. Biol. Chem. 283 (8) 4658-4664 [2008-02-22; online 2007-12-26]
Magda Bienko

Year 2006

Ubiquitin hubs in oncogenic networks.
Crosetto N, Bienko M, Dikic I
pii: 4/12/899
Molecular cancer research : MCR 4 (12) 899-904 [2006-12-00; online 2006-12-26]
Magda Bienko
Ubiquitin-binding motifs in REV1 protein are required for its role in the tolerance of DNA damage.
Guo C, Tang TS, Bienko M, ..., Dikic I, Friedberg EC
pii: MCB.01118-06 pmc: PMC1636806
Molecular and Cellular Biology 26 (23) 8892-8900 [2006-12-00; online 2006-09-18]
Magda Bienko

Year 2005

Ubiquitin-binding domains in Y-family polymerases regulate translesion synthesis.
Bienko M, Green CM, Crosetto N, ..., Hofmann K, Dikic I
pii: 310/5755/1821
Science (New York, N.Y.) 310 (5755) 1821-1824 [2005-12-16; online 2005-12-17]
Magda Bienko