Fabien Burki

51 publications

Year 2020

Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding
Santoferrara L, Burki F, Filker S, ..., Dunthorn M, McManus GB
J. Eukaryot. Microbiol. 67 (5) 612-622 [2020-09-00; online 2020-07-02]
Fabien Burki
A molecular timescale for the origin of red algal-derived plastids
Strassert JFH, Irisarri I, Williams TA, Burki F
- - (-) - [2020-08-21; online 2020-08-21]
Fabien Burki
Phylogenomic Insights into the Origin of Primary Plastids
Irisarri I, Strassert JFH, Burki F
- - (-) - [2020-08-04; online 2020-08-04]
Fabien Burki
Predatory colponemids are the sister group to all other alveolates
Tikhonenkov DV, Strassert JFH, Janouškovec J, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 149 (-) 106839 [2020-08-00; online 2020-08-00]
Fabien Burki
EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotic life
Richter DJ, Berney C, Strassert JFH, Burki F, de Vargas C
- - (-) - [2020-07-01; online 2020-07-01]
Fabien Burki
The New Tree of Eukaryotes
Burki F, Roger AJ, Brown MW, Simpson AGB
Trends in Ecology & Evolution 35 (1) 43-55 [2020-01-00; online 2020-01-00]
Fabien Burki

Year 2019

Progress towards the Tree of Eukaryotes
Keeling PJ, Burki F
Current Biology 29 (16) R808-R817 [2019-08-00; online 2019-08-00]
Fabien Burki
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life.
Strassert JFH, Jamy M, Mylnikov AP, Tikhonenkov DV, Burki F
Mol. Biol. Evol. 36 (4) 757-765 [2019-04-01; online 2019-01-23]
Fabien Burki
Phylogenomics supports the monophyly of the Cercozoa.
Irwin NAT, Tikhonenkov DV, Hehenberger E, ..., Burki F, Keeling PJ
Mol. Phylogenet. Evol. 130 (-) 416-423 [2019-01-00; online 2018-10-11]
Fabien Burki
Ascetosporea
Bass D, Ward GM, Burki F
Current Biology 29 (1) R7-R8 [2019-01-00; online 2019-01-00]
Fabien Burki
Revisions to the Classification, Nomenclature, and Diversity of Eukaryotes.
Adl SM, Bass D, Lane CE, ..., Zlatogursky V, Zhang Q
J. Eukaryot. Microbiol. 66 (1) 4-119 [2019-01-00; online 2018-09-27]
Fabien Burki

Year 2018

Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates
Strassert JFH, Karnkowska A, Hehenberger E, ..., Santoro AE, Keeling PJ
ISME J 12 (1) 304-308 [2018-01-00; online 2017-10-10]
Affiliated researcher Fabien Burki

Year 2017

A New Lineage of Eukaryotes Illuminates Early Mitochondrial Genome Reduction
Janouškovec J, Tikhonenkov DV, Burki F, ..., Mylnikov AP, Keeling PJ
Current Biology 27 (23) 3717-3724.e5 [2017-12-00; online 2017-12-00]
Affiliated researcher Fabien Burki
Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics
Janouškovec J, Gavelis GS, Burki F, ..., Rohwer FL, Saldarriaga JF
Proceedings of the National Academy of Sciences 114 (2) E171-E180 [2017-01-10; online 2016-12-27]
Fabien Burki

Year 2016

Evolutionary Origins of Rhizarian Parasites
Sierra R, Cañas-Duarte SJ, Burki F, ..., Arzul I, Pawlowski J
Molecular Biology and Evolution 33 (4) 980-983 [2016-04-00; online 2015-12-16]
Fabien Burki

Year 2015

Year 2014

Single-cell transcriptomics for microbial eukaryotes.
Kolisko M, Boscaro V, Burki F, Lynn DH, Keeling PJ
Curr. Biol. 24 (22) R1081-R1082 [2014-11-17; online 2014-11-17]
Fabien Burki
Rhizaria.
Burki F, Keeling PJ
Curr. Biol. 24 (3) R103-R107 [2014-02-03; online 2014-02-08]
Fabien Burki
Endosymbiotic Gene Transfer in Tertiary Plastid-Containing Dinoflagellates
Burki F, Imanian B, Hehenberger E, ..., Maruyama S, Keeling PJ
Eukaryotic Cell 13 (2) 246-255 [2014-02-00; online 2013-12-02]
Fabien Burki

Year 2013

Phylogenomics of the Intracellular Parasite Mikrocytos mackini Reveals Evidence for a Mitosome in Rhizaria
Burki F, Corradi N, Sierra R, ..., Abbott CL, Keeling PJ
Current Biology 23 (16) 1541-1547 [2013-08-00; online 2013-08-00]
Fabien Burki

Year 2012

Collodictyon--An Ancient Lineage in the Tree of Eukaryotes
Zhao S, Burki F, Brate J, ..., Klaveness D, Shalchian-Tabrizi K
Molecular Biology and Evolution 29 (6) 1557-1568 [2012-06-01; online 2012-01-06]
Fabien Burki
Re-evaluating the Green versus Red Signal in Eukaryotes with Secondary Plastid of Red Algal Origin
Burki F, Flegontov P, Oborník M, ..., Lukeš J, Keeling PJ
Genome Biol Evol 4 (6) 626-635 [2012-00-00; online 2012-05-16]
Fabien Burki

Year 2011

Year 2010

Year 2009

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses.
Kumar S, Skjaeveland A, Orr RJ, ..., Botnen A, Shalchian-Tabrizi K
BMC Bioinformatics 10 (-) 357 [2009-10-28; online 2009-10-28]
Fabien Burki
Evolutionary position of breviate amoebae and the primary eukaryote divergence.
Minge MA, Silberman JD, Orr RJ, ..., Skjaeveland A, Jakobsen KS
Proceedings of the Royal Society B: Biological Sciences 276 (1657) 597-604 [2009-02-22; online 2008-11-14]
Fabien Burki

Year 2008

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.
Burki F, Shalchian-Tabrizi K, Pawlowski J
Biol. Lett. 4 (4) 366-369 [2008-08-23; online 2008-06-05]
Fabien Burki

Year 2007

Phylogenomics reshuffles the eukaryotic supergroups.
Burki F, Shalchian-Tabrizi K, Minge M, ..., Jakobsen KS, Pawlowski J
PLoS ONE 2 (8) e790 [2007-08-29; online 2007-08-29]
Fabien Burki

Year 2006

Analysis of expressed sequence tags from a naked foraminiferan Reticulomyxa filosa.
Burki F, Nikolaev SI, Bolivar I, Guiard J, Pawlowski J
Genome 49 (8) 882-887 [2006-08-00; online 2006-10-13]
Fabien Burki

Year 2004

Year 2002