Publications 2024

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Title Authors Journal Published Online
GenePioneer: A Comprehensive Python Package for Identification of Essential Genes and Modules in Cancer Taheri G, Haerianardakani A - - (-) - 2024-12-21 2024-12-21
Author Correction: AutoTransOP: translating omics signatures without orthologue requirements using deep learning. Meimetis N, Pullen KM, Zhu DY, ..., Magliacane S, Lauffenburger DA NPJ Syst Biol Appl 10 (1) 148 2024-12-13 2024-12-13
Plasma proteomics for novel biomarker discovery in childhood tuberculosis Fossati A, Wambi P, Jaganath D, ..., Zar HJ, Swaney DL - - (-) - 2024-12-08 2024-12-08
A landscape of X-inactivation during human T cell development. Gylemo B, Bensberg M, Hennings V, ..., Ekwall O, Nestor CE Nat Commun 15 (1) 10527 2024-12-04 2024-12-04
Characterising and preventing the gut microbiota's inactivation of trifluridine, a colorectal cancer drug. McCoubrey LE, Shen C, Mwasambu S, ..., Globisch D, Basit AW Eur J Pharm Sci 203 (-) 106922 2024-12-01 2024-10-03
The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-Transhimalaya biota? Hofmann S, Podsiadlowski L, Andermann T, ..., Jablonski D, Schmidt J Mol. Phylogenet. Evol. 201 (-) 108166 2024-12-00 2024-08-09
Microneedles loaded with lipid nanocarriers for local treatment of vulvovaginal candidiasis Udayakumar P, Škalko-Basnet N, Salas Cotaquispe CF, ..., Du J, Teleki A - - (-) - 2024-11-25 2024-11-25
The early transcriptional and post-transcriptional responses to fluconazole in sensitive and resistant Candida albicans. Stevens I, Silao FG, Huch S, ..., Ljungdahl PO, Pelechano V Sci Rep 14 (1) 29012 2024-11-22 2024-11-22
Flipping a switch on BRD4: How to control the do-it-all. van Hout FAH, Vihervaara A Mol. Cell 84 (22) 4257-4259 2024-11-21 2024-11-23
Single-molecule states link transcription factor binding to gene expression. Doughty BR, Hinks MM, Schaepe JM, ..., Bintu L, Greenleaf WJ Nature - (-) - 2024-11-20 2024-11-20
Complete genome sequences of the prosthecate dimorphic bacteria Brevundimonas intermedia CB63T and Brevundimonas staleyi FWC43T. Hallgren J, Daneby F, Jonas K Microbiol Resour Announc - (-) e0105024 2024-11-20 2024-11-20
A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data Ridley R, Persson C, Oxelman B, Andermann T, Bacon CD Systematic Botany 49 (3) 617-625 2024-11-19 2024-11-19
JAK2-mutant clonal hematopoiesis is associated with venous thromboembolism. Zon RL, Sekar A, Clapham K, ..., Natarajan P, Ebert BL Blood 144 (20) 2149-2154 2024-11-14 2024-08-05
Colchicine prevents accelerated atherosclerosis in TET2-mutant clonal haematopoiesis. Zuriaga MA, Yu Z, Matesanz N, ..., Natarajan P, Fuster JJ Eur. Heart J. 45 (43) 4601-4615 2024-11-14 2024-09-01
Annotated genome sequences of Salmonella Haifa, Salmonella Bangkok, and Salmonella Reading, isolated from chicken meat in South Africa. Mathole M, Carroll L, Khabo-Mmekoa C, Mabogoane N, Matle I Microbiol Resour Announc 13 (11) e0028424 2024-11-12 2024-10-09
Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females. Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E Front Neuroendocrinol - (-) 101160 2024-11-06 2024-11-06
Loss of heterozygosity of CYP2D6 enhances the sensitivity of hepatocellular carcinomas to talazoparib. Zhang X, Rameika N, Zhong L, ..., Globisch D, Sjöblom T EBioMedicine 109 (-) 105368 2024-11-00 2024-10-04
Integration across biophysical scales identifies molecular and cellular correlates of person-to-person variability in human brain connectivity. Ng B, Tasaki S, Greathouse KM, ..., Gaiteri C, Herskowitz JH Nat. Neurosci. 27 (11) 2240-2252 2024-11-00 2024-10-31
Building pangenome graphs. Garrison E, Guarracino A, Heumos S, ..., Williams RW, Prins P Nat. Methods 21 (11) 2008-2012 2024-11-00 2024-10-21
An ancient ecospecies of Helicobacter pylori. Tourrette E, Torres RC, Svensson SL, ..., Thorell K, Falush D Nature 635 (8037) 178-185 2024-11-00 2024-10-16
The ABCF ATPase New1 resolves translation termination defects associated with specific tRNAArg and tRNALys isoacceptors in the P site. Turnbull K, Paternoga H, von der Weth E, ..., Wilson DN, Hauryliuk V Nucleic Acids Res. 52 (19) 12005-12020 2024-10-28 2024-09-01
White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study. Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 2024-10-23 2024-10-23
Fish are poor sentinels for surveillance of riverine AMR Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U - - (-) - 2024-10-22 2024-10-22
Resilience of genetic diversity in forest trees over the Quaternary. Milesi P, Kastally C, Dauphin B, ..., Pyhäjärvi T, GenTree Consortium Nat Commun 15 (1) 8538 2024-10-14 2024-10-14
Metagenomic assemblies tend to break around antibiotic resistance genes. Abramova A, Karkman A, Bengtsson-Palme J BMC Genomics 25 (1) 959 2024-10-14 2024-10-14
Properties and limitations of eDNA substrates for terrestrial animal monitoring Zhao B, Andermann T - - (-) - 2024-10-10 2024-10-10
Peripartum depression symptom trajectories, telomere length and genotype, and adverse childhood experiences. Vrettou M, Lager S, Toffoletto S, ..., Skalkidou A, Comasco E BMC Psychiatry 24 (1) 661 2024-10-08 2024-10-08
Genetic Adaptation to Amoxicillin inEscherichia coli: The Limited Role ofdinBandkatE Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Kuile Bt - - (-) - 2024-10-06 2024-10-06
Multiplexed chromatin immunoprecipitation sequencing for quantitative study of histone modifications and chromatin factors. Kumar B, Navarro C, Yung PYK, ..., Martin M, Elsässer SJ Nat Protoc - (-) - 2024-10-03 2024-10-03
The genetic architecture of repeated local adaptation to climate in distantly related plants. Whiting JR, Booker TR, Rougeux C, ..., Zhou L, Yeaman S Nat Ecol Evol 8 (10) 1933-1947 2024-10-00 2024-08-26
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. Weitz P, Valkonen M, Solorzano L, ..., Ruusuvuori P, Rantalainen M Med Image Anal 97 (-) 103257 2024-10-00 2024-07-01
The 'queen of the Andes' (Puya raimondii) is genetically fragile and fragmented: a consequence of long generation time and semelparity? Liu L, James J, Zhang Y, ..., Lascoux M, Ge X New Phytol. 244 (1) 277-291 2024-10-00 2024-08-12
Proteomic changes in Alzheimer's disease associated with progressive Aβ plaque and tau tangle pathologies. Pichet Binette A, Gaiteri C, Wennström M, ..., Vogel JW, Hansson O Nat. Neurosci. 27 (10) 1880-1891 2024-10-00 2024-08-26
Lipidome changes due to improved dietary fat quality inform cardiometabolic risk reduction and precision nutrition. Eichelmann F, Prada M, Sellem L, ..., Schulze MB, Wittenbecher C Nat. Med. 30 (10) 2867-2877 2024-10-00 2024-07-11
Bayesian polynomial neural networks and polynomial neural ordinary differential equations. Fronk C, Yun J, Singh P, Petzold L PLoS Comput Biol 20 (10) e1012414 2024-10-00 2024-10-10
Assessment of the exposure to cytotoxic Bacillus cereus group genotypes through high-temperature, short-time milk consumption. Su J, Chandross-Cohen T, Qian C, ..., Wiedmann M, Kovac J J Dairy Sci 107 (10) 7631-7647 2024-10-00 2024-06-06
The regulatory landscape of interacting RNA and protein pools in cellular homeostasis and cancer. Gallardo-Dodd CJ, Kutter C Hum Genomics 18 (1) 109 2024-09-27 2024-09-27
Introducing synthetic thermostable RNase inhibitors to single-cell RNA-seq. Noble JC, Lentini A, Hagemann-Jensen M, Sandberg R, Reinius B Nat Commun 15 (1) 8373 2024-09-27 2024-09-27
The Organelle in the Ointment: improved detection of cryptic mitochondrial reads resolves many unknown sequences in cross-species microbiome analyses Sonett D, Brown T, Bengtsson-Palme J, Padilla-Gamiño JL, Zaneveld JR ISME Commun - (-) - 2024-09-24 2024-09-24
Improved sub-genomic RNA prediction with the ARTIC protocol. Baudeau T, Sahlin K Nucleic Acids Res. 52 (17) e82 2024-09-23 2024-08-16
Integrating amyloid and tau imaging with proteomics and genomics in Alzheimer's disease. Vilkaite G, Vogel J, Mattsson-Carlgren N Cell Rep Med 5 (9) 101735 2024-09-17 2024-09-19
Sequence variants influencing the regulation of serum IgG subclass levels. Olafsdottir TA, Thorleifsson G, Lopez de Lapuente Portilla A, ..., Nilsson B, Stefansson K Nat Commun 15 (1) 8054 2024-09-14 2024-09-14
Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma. Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y J. Clin. Invest. - (-) - 2024-09-10 2024-09-10
Long-term longitudinal analysis of 4,187 participants reveals insights into determinants of clonal hematopoiesis. Uddin MM, Saadatagah S, Niroula A, ..., Ballantyne CM, Natarajan P Nat Commun 15 (1) 7858 2024-09-09 2024-09-09
The protein domains of vertebrate species in which selection is more effective have greater intrinsic structural disorder Weibel CA, Wheeler AL, James JE, ..., McShea H, Masel J Elife 12 (-) - 2024-09-06 2024-09-06
Comprehensive analysis of the RBP regulome reveals functional modules and drug candidates in liver cancer Garbulowski M, Mosca R, Gallardo-Dodd CJ, Kutter C, Sonnhammer ELL - - (-) - 2024-09-06 2024-09-06
Development of a three-dimensional scoring model for the assessment of continuous glucose monitoring data in type 1 diabetes. Dawnbringer J, Hill H, Lundgren M, ..., Carlsson PO, Espes D BMJ Open Diabetes Res Care 12 (4) - 2024-09-05 2024-09-05
Deep learning segmentation model produces accurate biodiversity predictions at 10 m spatial resolution Andermann T, Häggmark J, Olsson P, Högström A - - (-) - 2024-09-05 2024-09-05
Caveolin assemblies displace one bilayer leaflet to organize and bend membranes. Doktorova M, Daum S, Ebenhan J, ..., Kenworthy AK, Levental I bioRxiv - (-) - 2024-09-04 2024-09-04
Cryo-EM images of phase-separated lipid bilayer vesicles analyzed with a machine-learning approach. Sharma KD, Doktorova M, Waxham MN, Heberle FA Biophys. J. 123 (17) 2877-2891 2024-09-03 2024-04-30
Recurrent hybridization and gene flow shaped Norway and Siberian spruce evolutionary history over multiple glacial cycles Zhou Q, Karunarathne P, Andersson‐Li L, ..., Lascoux M, Milesi P Mol. Ecol. 33 (17) - 2024-09-00 2024-08-15
MDverse, shedding light on the dark matter of molecular dynamics simulations Tiemann JK, Szczuka M, Bouarroudj L, ..., Chavent M, Poulain P Elife 12 (-) - 2024-08-30 2024-08-30
Structure prediction of alternative protein conformations Bryant P, Noé F Nat Commun 15 (1) - 2024-08-26 2024-08-26
Mechanistic modeling of cell viability assays with in silico lineage tracing. Mutsuddy A, Huggins JR, Amrit A, ..., Calhoun JC, Birtwistle MR bioRxiv - (-) - 2024-08-26 2024-08-26
Multi-layered dosage compensation of the avian Z chromosome Papanicolaou N, Lentini A, Wettersten S, ..., Wright D, Reinius B - - (-) - 2024-08-20 2024-08-20
Defining Vaginal Community Dynamics: daily microbiome transitions, the role of menstruation, bacteriophages, and bacterial genes. Hugerth LW, Krog MC, Vomstein K, ..., Nielsen HS, Schuppe-Koistinen I Microbiome 12 (1) 153 2024-08-19 2024-08-19
Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization. Erb IK, Suarez C, Frank EM, ..., Lindberg E, Paul CJ FEMS Microbes 5 (-) xtae024 2024-08-14 2024-08-14
Deciphering the genetics and mechanisms of predisposition to multiple myeloma. Went M, Duran-Lozano L, Halldorsson GH, ..., Houlston R, Nilsson B Nat Commun 15 (1) 6644 2024-08-05 2024-08-05
Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae). Hofmann S, Rödder D, Andermann T, ..., Schmidt J, Podsiadlowski L Mol. Ecol. 33 (15) e17446 2024-08-00 2024-07-01
OCT1 (SLC22A1) transporter kinetics and regulation in primary human hepatocyte 3D spheroids. Mickols E, Meyer A, Handin N, ..., Karlgren M, Artursson P Sci Rep 14 (1) 17334 2024-07-27 2024-07-27
Complex Polyploids: Origins, Genomic Composition, and Role of Introgressed Alleles. Leal JL, Milesi P, Hodková E, ..., Salojärvi J, Lascoux M Syst. Biol. 73 (2) 392-418 2024-07-27 2024-04-13
Adaptive Robust Learning using Latent Bernoulli Variables Karakulev A, Zachariah D, Singh P Proceedings of the 41st International Conference on Machine Learning, PMLR 235 (-) 23105-23122 2024-07-27 2023-12-04
Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile Bryant P, Noé F PLoS Comput Biol 20 (7) e1012253 2024-07-25 2024-07-25
Multiscale photocatalytic proximity labeling reveals cell surface neighbors on and between cells. Lin Z, Schaefer K, Lui I, ..., Sali A, Wells JA Science (New York, N.Y.) 385 (6706) eadl5763 2024-07-19 2024-07-19
An intracellular hydrophobic nexus critical for hERG1 channel slow deactivation. Stevens-Sostre WA, Flores-Aldama L, Bustos D, ..., Delemotte L, Robertson GA Biophys. J. 123 (14) 2024-2037 2024-07-16 2024-01-12
Characterization of a lipid-based jumbo phage compartment as a hub for early phage infection. Mozumdar D, Fossati A, Stevenson E, ..., Swaney DL, Bondy-Denomy J Cell Host Microbe 32 (7) 1050-1058.e7 2024-07-10 2024-06-12
Broadcasters, receivers, functional groups of metabolites, and the link to heart failure by revealing metabolomic network connectivity. Yazdani A, Mendez-Giraldez R, Yazdani A, ..., Larson MG, Elsea SH Metabolomics 20 (4) 71 2024-07-07 2024-07-07
A generalizable data-driven model of atrophy heterogeneity and progression in memory clinic settings. Baumeister H, Vogel JW, Insel PS, ..., Hansson O, Berron D Brain 147 (7) 2400-2413 2024-07-05 2024-04-24
Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women. Bashir Z, Hugerth LW, Krog MC, ..., Fransson E, Nielsen HS Front. Cell. Infect. Microbiol. 14 (-) 1324794 2024-07-02 2024-07-02
CCG-1423-derived compounds reduce global RNA synthesis and inhibit transcriptional responses. Prajapati B, Sokolova M, Sidorenko E, ..., Vihervaara A, Vartiainen MK J. Cell. Sci. 137 (13) - 2024-07-01 2024-07-15
Detection and quantification of Na,K-ATPase dimers in the plasma membrane of living cells by FRET-FCS. Nordahl L, Akkuratov EE, Heimgärtner J, ..., Wennmalm S, Brismar H Biochim Biophys Acta Gen Subj 1868 (7) 130619 2024-07-00 2024-04-20
Comparison of Xrn1 and Rat1 5' → 3' exoribonucleases in budding yeast supports the specific role of Xrn1 in cotranslational mRNA decay. Pérez-Ortín JE, Jordán-Pla A, Zhang Y, ..., Pelechano V, García-Martínez J Yeast 41 (7) 458-472 2024-07-00 2024-06-14
Design of linear and cyclic peptide binders of different lengths from protein sequence information Li Q, Vlachos EN, Bryant P - - (-) - 2024-06-22 2024-06-22
Deciphering the functional specialization of whole-brain spatiomolecular gradients in the adult brain. Vogel JW, Alexander-Bloch AF, Wagstyl K, ..., Satterthwaite TD, Seidlitz J Proc. Natl. Acad. Sci. U.S.A. 121 (25) e2219137121 2024-06-18 2024-06-11
Disease progression modelling reveals heterogeneity in trajectories of Lewy-type α-synuclein pathology. Mastenbroek SE, Vogel JW, Collij LE, ..., Beach TG, Hansson O Nat Commun 15 (1) 5133 2024-06-15 2024-06-15
Cortical morphology variations during the menstrual cycle in individuals with and without premenstrual dysphoric disorder. Dubol M, Stiernman L, Sundström-Poromaa I, Bixo M, Comasco E J Affect Disord 355 (-) 470-477 2024-06-15 2024-03-27
Pharmaceutical Quality by Design Approach to Develop High-Performance Nanoparticles for Magnetic Hyperthermia. Ansari SR, Suárez-López YDC, Thersleff T, ..., Rinaldi-Ramos CM, Teleki A ACS Nano 18 (23) 15284-15302 2024-06-11 2024-05-30
Fluoroquinolone-Specific Resistance Trajectories inE. coliand their Dependence on the SOS-Response Teichmann L, Luitwieler S, Bengtsson-Palme J, ter Kuile B - - (-) - 2024-06-06 2024-06-06
Chemical signatures delineate heterogeneous amyloid plaque populations across the Alzheimer's disease spectrum. Koutarapu S, Ge J, Dulewicz M, ..., Schöll M, Hanrieder J bioRxiv - (-) - 2024-06-03 2024-06-03
Atrial Fibrillation and Clonal Hematopoiesis in TET2 and ASXL1. Saadatagah S, Naderian M, Uddin M, ..., Kullo IJ, Ballantyne CM JAMA Cardiol 9 (6) 497-506 2024-06-01 2024-04-10
Mid-pregnancy allopregnanolone levels and trajectories of perinatal depressive symptoms. Björväng RD, Walldén Y, Fransson E, ..., Sundström-Poromaa I, Skalkidou A Psychoneuroendocrinology 164 (-) 107009 2024-06-00 2024-02-28
Structure prediction of protein-ligand complexes from sequence information with Umol Bryant P, Kelkar A, Guljas A, Clementi C, Noé F Nat Commun 15 (1) - 2024-05-28 2024-05-28
Bacillamide D produced by Bacillus cereus from the mouse intestinal bacterial collection (miBC) is a potent cytotoxin in vitro. Hohmann M, Brunner V, Johannes W, ..., Janßen KP, Gulder TAM Commun Biol 7 (1) 655 2024-05-28 2024-05-28
The protective role of commensal gut microbes and their metabolites against bacterial pathogens. Cheng L, Correia MSP, Higdon SM, ..., Globisch D, Du J Gut Microbes 16 (1) 2356275 2024-05-26 2024-05-26
Effectiveness and Cost-effectiveness of Artificial Intelligence-assisted Pathology for Prostate Cancer Diagnosis in Sweden: A Microsimulation Study. Du X, Hao S, Olsson H, ..., Eklund M, Clements M Eur Urol Oncol - (-) - 2024-05-23 2024-05-23
An atlas of protein-protein associations of human tissues prioritizes candidate disease genes Laman Trip DS, van Oostrum M, Memon D, ..., Wollscheid B, Beltrao P - - (-) - 2024-05-17 2024-05-17
The full spectrum of SLC22 OCT1 mutations illuminates the bridge between drug transporter biophysics and pharmacogenomics. Yee SW, Macdonald CB, Mitrovic D, ..., Giacomini KM, Coyote-Maestas W Mol. Cell 84 (10) 1932-1947.e10 2024-05-16 2024-05-03
Compositional and functional differences of the vaginal microbiota of women with and without cervical dysplasia. Norenhag J, Edfeldt G, Stålberg K, ..., Schuppe-Koistinen I, Olovsson M Sci Rep 14 (1) 11183 2024-05-16 2024-05-16
Modeling brain sex in the limbic system as phenotype for female-prevalent mental disorders. Matte Bon G, Kraft D, Comasco E, Derntl B, Kaufmann T Biol Sex Differ 15 (1) 42 2024-05-15 2024-05-15
Iron oxide nanoparticles for treatment and diagnosis of chronic inflammatory diseases: A systematic review. Ansari SR, Mahajan J, Teleki A Wiley Interdiscip Rev Nanomed Nanobiotechnol 16 (3) e1963 2024-05-10 2024-05-10
Cerebrospinal fluid reference proteins increase accuracy and interpretability of biomarkers for brain diseases. Karlsson L, Vogel J, Arvidsson I, ..., Mattsson-Carlgren N, Hansson O Nat Commun 15 (1) 3676 2024-05-01 2024-05-01
White matter volume and treatment with selective progesterone receptor modulator in patients with premenstrual dysphoric disorder. Kaltsouni E, Wikström J, Lanzenberger R, Sundström-Poromaa I, Comasco E Psychoneuroendocrinology 163 (-) 106977 2024-05-00 2024-01-22
Disease staging of Alzheimer's disease using a CSF-based biomarker model. Salvadó G, Horie K, Barthélemy NR, ..., Bateman RJ, Hansson O Nat Aging 4 (5) 694-708 2024-05-00 2024-03-21
Cellular energy regulates mRNA degradation in a codon-specific manner. Tomaz da Silva P, Zhang Y, Theodorakis E, ..., Pelechano V, Gagneur J Mol Syst Biol 20 (5) 506-520 2024-05-00 2024-03-15
Clonal Hematopoiesis of Indeterminate Potential With Loss of Tet2 Enhances Risk for Atrial Fibrillation Through Nlrp3 Inflammasome Activation. Lin AE, Bapat AC, Xiao L, ..., Ellinor PT, Ebert BL Circulation 149 (18) 1419-1434 2024-04-30 2024-02-15
Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer. Papakyriacou I, Kutkaite G, Rúbies Bedós M, ..., Menden MP, Mao Y Nat Commun 15 (1) 3581 2024-04-27 2024-04-27
Inference of drug off-target effects on cellular signaling using interactome-based deep learning. Meimetis N, Lauffenburger DA, Nilsson A iScience 27 (4) 109509 2024-04-19 2024-03-14
Comparison of the performance of multiple whole-genome sequence-based tools for the identification of Bacillus cereus sensu stricto biovar Thuringiensis. Chung T, Salazar A, Harm G, ..., Carroll LM, Kovac J Applied and environmental microbiology 90 (4) e0177823 2024-04-17 2024-03-12
Efficient calculation of orientation-dependent lipid dynamics from membrane simulations. Doktorova M, Khelashvili G, Brown MF bioRxiv - (-) - 2024-04-15 2024-04-15
Identification of New Ketamine Metabolites and Their Detailed Distribution in the Mammalian Brain. Vallianatou T, de Souza Anselmo C, Tsiara I, ..., Lundgaard I, Globisch D ACS Chem Neurosci 15 (7) 1335-1341 2024-04-03 2024-03-20
Rapid and Bifunctional Chemoselective Metabolome Analysis of Liver Disease Plasma Using the Reagent 4-Nitrophenyl-2H-azirine. Lin W, Gerullat L, Braadland PR, ..., Hov JR, Globisch D Angew. Chem. Int. Ed. Engl. 63 (14) e202318579 2024-04-02 2024-01-31
Lifetime Duration of Breastfeeding and Cardiovascular Risk in Women With Type 2 Diabetes or a History of Gestational Diabetes: Findings From Two Large Prospective Cohorts. Birukov A, Guasch-Ferré M, Ley SH, ..., Hu FB, Zhang C Diabetes Care 47 (4) 720-728 2024-04-01 2024-02-20
Hybridization mediated range expansion and climate change resilience in two keystone tree species of boreal forests. Karunarathne P, Zhou Q, Lascoux M, Milesi P Glob Chang Biol 30 (4) e17262 2024-04-00 2024-03-28
Estrogen receptor activation remodels TEAD1 gene expression to alleviate hepatic steatosis. Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C Mol Syst Biol 20 (4) 374-402 2024-04-00 2024-03-08
Direct Salmonella injection into enteroid cells allows the study of host-pathogen interactions in the cytosol with high spatiotemporal resolution. Ernst C, Andreassen PR, Giger GH, ..., Hardt WD, Vorholt JA PLoS Biol. 22 (4) e3002597 2024-04-00 2024-04-29
Despite structural identity, ace-1 heterogenous duplication resistance alleles are quite diverse in Anopheles mosquitoes. Claret JL, Di-Liegro M, Namias A, ..., Milesi P, Labbé P Heredity (Edinb) 132 (4) 179-191 2024-04-00 2024-01-27
DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes. Frommelt F, Fossati A, Uliana F, ..., Ciuffa R, Gstaiger M Nat. Methods 21 (4) 635-647 2024-04-00 2024-03-26
Biomarker-based staging of Alzheimer disease: rationale and clinical applications. Therriault J, Schindler SE, Salvadó G, ..., Jack CR, Rosa-Neto P Nat Rev Neurol 20 (4) 232-244 2024-04-00 2024-03-01
Designing efficient randstrobes for sequence similarity analyses. Karami M, Soltani Mohammadi A, Martin M, ..., Patro R, Sahlin K Bioinformatics 40 (4) - 2024-03-29 2024-04-05
Low coverage of species constrains the use of DNA barcoding to assess mosquito biodiversity. Moraes Zenker M, Portella TP, Pessoa FAC, Bengtsson-Palme J, Galetti PM Sci Rep 14 (1) 7432 2024-03-28 2024-03-28
Salmonella T3SS-2 virulence enhances gut-luminal colonization by enabling chemotaxis-dependent exploitation of intestinal inflammation. Gül E, Huuskonen J, Abi Younes A, ..., Bakkeren E, Hardt WD Cell Reports 43 (3) 113925 2024-03-26 2024-03-07
ProQ-dependent activation of Salmonella virulence genes mediated by post-transcriptional control of PhoP synthesis. Bergman S, Andresen L, Kjellin J, ..., Sellin ME, Holmqvist E mSphere 9 (3) e0001824 2024-03-26 2024-02-27
Cluster-free annotation of single cells using Earth mover’s distance-based classification Forlin R, Tajvar P, Wang N, Dimarogonas D, Brodin P - - (-) - 2024-03-20 2024-03-20
Plasma metabolites of a healthy lifestyle in relation to mortality and longevity: Four prospective US cohort studies. Tessier AJ, Wang F, Liang L, ..., Hu FB, Guasch-Ferré M Med 5 (3) 224-238.e5 2024-03-08 2024-02-15
Clonal haematopoiesis of indeterminate potential predicts incident cardiac arrhythmias. Schuermans A, Vlasschaert C, Nauffal V, ..., Natarajan P, Honigberg MC Eur. Heart J. 45 (10) 791-805 2024-03-07 2023-11-12
Uncovering driver genes in breast cancer through an innovative machine learning mutational analysis method. Taheri G, Habibi M Comput Biol Med 171 (-) 108234 2024-03-00 2024-02-29
The association of the RSC remodeler complex with chromatin is influenced by the prefoldin-like Bud27 and determines nucleosome positioning and polyadenylation sites usage in Saccharomyces cerevisiae. Cuevas-Bermúdez A, Martínez-Fernández V, Garrido-Godino AI, ..., Pelechano V, Navarro F Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1867 (1) 194995 2024-03-00 2023-11-13
Association of Somatic TET2 Mutations With Giant Cell Arteritis. Robinette ML, Weeks LD, Kramer RJ, ..., Rao DA, Ebert BL Arthritis & rheumatology (Hoboken, N.J.) 76 (3) 438-443 2024-03-00 2024-02-02
Risk factors for clonal hematopoiesis of indeterminate potential in people with HIV: a report from the REPRIEVE trial. Bhattacharya R, Uddin MM, Patel AP, ..., Grinspoon SK, Natarajan P Blood Adv 8 (4) 959-967 2024-02-27 2024-01-10
Predictive biomarkers of rapidly developing insulin deficiency in children with type 1 diabetes. Lundkvist P, Grönberg A, Carlsson PO, Ludvigsson J, Espes D BMJ Open Diabetes Res Care 12 (1) - 2024-02-27 2024-02-27
Equine enteroid-derived monolayers recapitulate key features of parasitic intestinal nematode infection. Hellman S, Martin F, Tydén E, ..., Svedberg P, Fossum C Vet Res 55 (1) 25 2024-02-27 2024-02-27
CAGI, the Critical Assessment of Genome Interpretation, establishes progress and prospects for computational genetic variant interpretation methods. Critical Assessment of Genome Interpretation Consortium Genome Biol. 25 (1) 53 2024-02-22 2024-02-22
Spatial Neurolipidomics at the Single Amyloid-β Plaque Level in Postmortem Human Alzheimer's Disease Brain. Michno W, Bowman A, Jha D, ..., Heeren RMA, Hanrieder J ACS Chem Neurosci 15 (4) 877-888 2024-02-21 2024-02-01
Targeting MYC induces lipid droplet accumulation by upregulation of HILPDA in clear cell renal cell carcinoma. Sainero-Alcolado L, Garde-Lapido E, Snaebjörnsson MT, ..., Schulze A, Arsenian-Henriksson M Proc. Natl. Acad. Sci. U.S.A. 121 (7) e2310479121 2024-02-13 2024-02-09
Stress biology: Complexity and multifariousness in health and disease. Mayer MP, Blair L, Blatch GL, ..., Wang SXY, Zininga T Cell Stress Chaperones 29 (1) 143-157 2024-02-00 2024-02-03
Plasma metabolite predictors of metabolic syndrome incidence and reversion. Semnani-Azad Z, Toledo E, Babio N, ..., Hu FB, Guasch-Ferré M Metabolism 151 (-) 155742 2024-02-00 2023-11-24
Multivalent insulin receptor activation using insulin-DNA origami nanostructures. Spratt J, Dias JM, Kolonelou C, ..., Ruas JL, Teixeira AI Nat Nanotechnol 19 (2) 237-245 2024-02-00 2023-10-09
Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles. Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C Life Sci. Alliance 7 (2) - 2024-02-00 2023-11-20
A two-step activation mechanism enables mast cells to differentiate their response between extracellular and invasive enterobacterial infection. von Beek C, Fahlgren A, Geiser P, ..., Pejler G, Sellin ME Nat Commun 15 (1) 904 2024-01-30 2024-01-30
AutoTransOP: translating omics signatures without orthologue requirements using deep learning. Meimetis N, Pullen KM, Zhu DY, ..., Magliacane S, Lauffenburger DA NPJ Syst Biol Appl 10 (1) 13 2024-01-29 2024-01-29
Soluble and multivalent Jag1 DNA origami nanopatterns activate Notch without pulling force. Smyrlaki I, Fördős F, Rocamonde-Lago I, ..., Teixeira AI, Högberg B Nat Commun 15 (1) 465 2024-01-18 2024-01-18
A structurally precise mechanism links an epilepsy-associated KCNC2 potassium channel mutation to interneuron dysfunction. Clatot J, Currin CB, Liang Q, ..., Covarrubias M, Goldberg EM Proc. Natl. Acad. Sci. U.S.A. 121 (3) e2307776121 2024-01-16 2024-01-09
Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans. Teuscher AC, Statzer C, Goyala A, ..., Aebersold R, Ewald CY Nat Commun 15 (1) 276 2024-01-04 2024-01-04
Clonal Hematopoiesis Risk Score and All-Cause and Cardiovascular Mortality in Older Adults. Saadatagah S, Uddin MM, Weeks LD, ..., Natarajan P, Ballantyne CM JAMA Netw Open 7 (1) e2351927 2024-01-02 2024-01-02
Non-invasive imaging of sympathetic innervation of the pancreas in individuals with type 2 diabetes. Vyakaranam AR, Mahamed MM, Hellman P, ..., Christoffersson G, Sundin A Diabetologia 67 (1) 199-208 2024-01-00 2023-11-07
Electroencephalography findings in menstrually-related mood disorders: A critical review. Kaltsouni E, Schmidt F, Zsido RG, ..., Sumner RL, Comasco E Front Neuroendocrinol 72 (-) 101120 2024-01-00 2024-01-02
Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice. Jarquín-Díaz VH, Ferreira SCM, Balard A, ..., Forslund-Startceva SK, Heitlinger E ISME Commun 4 (1) ycae053 2024-01-00 2024-04-15
Transfer Learning-Assisted Inverse Modeling in Nanophotonics Based on Mixture Density Networks Cheng L, Singh P, Ferranti F IEEE Access 12 (-) 55218-55224 2024-00-00 2024-00-00
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Publications 9.5.1