Publications 2020

Title Authors Journal Published Online
5´XP sRNA-seq: efficient identification of transcripts with and without 5´ phosphorylation reveals evolutionary conserved small RNA. Kugelberg U, Nätt D, Skog S, Kutter C, Öst A RNA Biol - (-) 1-12 2020-12-31 2020-12-31
Ulipristal Acetate for Treatment of Premenstrual Dysphoric Disorder: A Proof-of-Concept Randomized Controlled Trial Comasco E, Kopp Kallner H, Bixo M, ..., Epperson CN, Sundström-Poromaa I AJP - (-) appi.ajp.2020.2 2020-12-10 2020-12-10
Comparison of two arylsulfatases for targeted mass spectrometric analysis of microbiota-derived metabolites Jain A, Correia MSP, Meistermann H, ..., Löhr J, Globisch D J. Pharm. Biomed. Anal. - (-) - 2020-12-09 2020-12-02
Recent advances in single-molecule fluorescence microscopy render structural biology dynamic Bacic L, Sabantsev A, Deindl S Current Opinion in Structural Biology 65 (-) 61-68 2020-12-00 2020-12-00
Distinct pre-initiation steps in human mitochondrial translation Khawaja A, Itoh Y, Remes C, ..., Amunts A, Rorbach J Nat Commun 11 (1) - 2020-12-00 2020-06-10
Analysis of translating mitoribosome reveals functional characteristics of translation in mitochondria of fungi Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A Nat Commun 11 (1) - 2020-12-00 2020-10-14
An embryonic stem cell-specific heterochromatin state promotes core histone exchange in the absence of DNA accessibility Navarro C, Lyu J, Katsori AM, Caridha R, Elsässer SJ Nat Commun 11 (1) 5095 2020-12-00 2020-10-09
Pooled CRISPRi screening of the cyanobacterium Synechocystis sp PCC 6803 for enhanced industrial phenotypes Yao L, Shabestary K, Björk SM, ..., Jahn M, Hudson EP Nat Commun 11 (1) - 2020-12-00 2020-04-03
Type III ATP synthase is a symmetry-deviated dimer that induces membrane curvature through tetramerization Flygaard RK, Mühleip A, Tobiasson V, Amunts A Nat Commun 11 (1) - 2020-12-00 2020-10-22
Universal Single-Residue Terminal Labels for Fluorescent Live Cell Imaging of Microproteins. Lafranchi L, Schlesinger D, Kimler KJ, Elsässer SJ Journal of the American Chemical Society 142 (47) 20080-20087 2020-11-25 2020-11-11
Improved computational analysis of ribosome dynamics from 5′P degradome data using fivepseq Nersisyan L, Ropat M, Pelechano V NAR Genomics and Bioinformatics 2 (4) - 2020-11-24 2020-11-24
Low Shear Stress Increases Recombinant Protein Production and High Shear Stress Increases Apoptosis in Human Cells. Zhan C, Bidkhori G, Schwarz H, ..., Rockberg J, Chotteau V iScience 23 (11) 101653 2020-11-20 2020-10-07
Comparative dietary sulfated metabolome analysis reveals unknown metabolic interactions of the gut microbiome and the human host. Correia MSP, Jain A, Alotaibi W, ..., Rodriguez-Mateos A, Globisch D Free Radic. Biol. Med. 160 (-) 745-754 2020-11-20 2020-09-11
Amino Acid Modified RNA Bases as Building Blocks of an Early Earth RNA-Peptide World. Nainytė M, Müller F, Ganazzoli G, ..., Globisch D, Carell T Chemistry 26 (65) 14856-14860 2020-11-20 2020-10-14
Ligand design by targeting a binding site water. Matricon P, Suresh RR, Gao ZG, ..., Jacobson KA, Carlsson J Chem Sci 12 (3) 960-968 2020-11-19 2020-11-19
JAK inhibition reduces SARS-CoV-2 liver infectivity and modulates inflammatory responses to reduce morbidity and mortality. Stebbing J, Sánchez Nievas G, Falcone M, ..., Abizanda P, Lauschke VM Sci Adv - (-) - 2020-11-13 2020-11-13
The effect of Toll-like receptor stimulation on the motility of regulatory T cells. Chodaczek G, Pagni PP, Christoffersson G, ..., Wegrzyn AS, von Herrath M J. Autoimmun. - (-) 102563 2020-11-12 2020-11-12
A genomic catalog of Earth’s microbiomes Nayfach S, None , Roux S, ..., Kyrpides NC, Eloe-Fadrosh EA Nat Biotechnol - (-) - 2020-11-09 2020-11-09
Proteomics-Informed Identification of Luminal Targets For In Situ Diagnosis of Inflammatory Bowel Disease. Asad S, Wegler C, Ahl D, ..., Artursson P, Teleki A J Pharm Sci - (-) - 2020-11-04 2020-11-04
Lipoprotein Particles Interact with Membranes and Transfer Their Cargo without Receptors Plochberger B, Sych T, Weber F, ..., Stangl H, Sezgin E Biochemistry - (-) - 2020-11-04 2020-11-04
Redesigning Solvatochromic Probe Laurdan for Imaging Lipid Order Selectively in Cell Plasma Membranes. Danylchuk DI, Sezgin E, Chabert P, Klymchenko AS Anal. Chem. 92 (21) 14798-14805 2020-11-03 2020-10-12
Genome-wide detection of DNA double-strand breaks by in-suspension BLISS. Bouwman BAM, Agostini F, Garnerone S, ..., Roukos V, Crosetto N Nat Protoc - (-) - 2020-11-02 2020-11-02
Rpb4 and Puf3 imprint and post-transcriptionally control the stability of a common set of mRNAs in yeast. Garrido-Godino AI, Gupta I, Gutiérrez-Santiago F, ..., Pelechano V, Navarro F RNA Biol - (-) 1-15 2020-11-01 2020-11-01
Differences in structure and hibernation mechanism highlight diversification of the microsporidian ribosome Ehrenbolger K, Jespersen N, Sharma H, ..., Vossbrinck CR, Barandun J PLoS Biol. 18 (10) e3000958 2020-10-30 2020-10-30
Fluidity and Lipid Composition of Membranes of Peroxisomes, Mitochondria and the ER From Oleic Acid-Induced Saccharomyces cerevisiae Reglinski K, Steinfort-Effelsberg L, Sezgin E, ..., Eggeling C, Erdmann R Front Cell Dev Biol 8 (-) - 2020-10-29 2020-10-29
Nuclear gene proximity and protein interactions shape transcript covariations in mammalian single cells. Tarbier M, Mackowiak SD, Frade J, ..., Gallant CJ, Friedländer MR Nat Commun 11 (1) 5445 2020-10-28 2020-10-28
Potential Anticancer Effect of Carvacrol Codrugs on Human Glioblastoma Cells. Yazici A, Marinelli L, Cacciatore I, ..., Mardinoğlu A, Türkez H Curr Drug Deliv - (-) - 2020-10-27 2020-10-27
Epithelial inflammasomes in the defense against Salmonella gut infection. Fattinger SA, Sellin ME, Hardt WD Curr Opin Microbiol 59 (-) 86-94 2020-10-27 2020-10-27
Imaging of the glucagon receptor in subjects with type 2 diabetes. Eriksson O, Velikyan I, Haack T, ..., Tillner J, Wagner M Journal of nuclear medicine : official publication, Society of Nuclear Medicine - (-) - 2020-10-23 2020-10-23
Neuroimaging the menstrual cycle: A multimodal systematic review. Dubol M, Epperson CN, Sacher J, ..., Sundström-Poromaa I, Comasco E Front Neuroendocrinol 60 (-) 100878 2020-10-22 2020-10-22
Rapid Preparation of a Large Sulfated Metabolite Library for Structure Validation in Human Samples. Correia MSP, Lin W, Aria AJ, Jain A, Globisch D Metabolites 10 (10) - 2020-10-16 2020-10-16
Network analysis reveals how lipids and other cofactors influence membrane protein allostery. Westerlund AM, Fleetwood O, Pérez-Conesa S, Delemotte L J Chem Phys 153 (14) 141103 2020-10-14 2020-10-23
TIF-Seq2 disentangles overlapping isoforms in complex human transcriptomes. Wang J, Li B, Marques S, ..., Wei W, Pelechano V Nucleic Acids Res. 48 (18) e104 2020-10-09 2020-08-21
Character and environmental lability of cyanobacteria‐derived dissolved organic matter Patriarca C, Sedano‐Núñez VT, Garcia SL, ..., Tranvik LJ, Hawkes JA Limnol. Oceanogr. - (-) - 2020-10-09 2020-10-09
Receptor occupancy of dual glucagon-like peptide 1/glucagon receptor agonist SAR425899 in individuals with type 2 diabetes. Eriksson O, Haack T, Hijazi Y, ..., Wagner M, Tillner J Sci Rep 10 (1) 16758 2020-10-07 2020-10-07
Male swarming aggregation pheromones increase female attraction and mating success among multiple African malaria vector mosquito species. Mozūraitis R, Hajkazemian M, Zawada JW, ..., Borg-Karlson AK, Emami SN Nat Ecol Evol 4 (10) 1395-1401 2020-10-00 2020-08-03
Progesterone - Friend or foe? Sundström-Poromaa I, Comasco E, Sumner R, Luders E Front Neuroendocrinol 59 (-) 100856 2020-10-00 2020-07-28
Body composition after allogeneic haematopoietic cell transplantation/total body irradiation in children and young people: a restricted systematic review. Lorenc A, Hamilton-Shield J, Perry R, Stevens M, CTYA HSCT Adipose and Muscle Late Effects Working Group J Cancer Surviv 14 (5) 624-642 2020-10-00 2020-07-18
GPSeq reveals the radial organization of chromatin in the cell nucleus. Girelli G, Custodio J, Kallas T, ..., Crosetto N, Bienko M Nat. Biotechnol. 38 (10) 1184-1193 2020-10-00 2020-05-25
Streamlined and Abundant Bacterioplankton Thrive in Functional Cohorts. Mondav R, Bertilsson S, Buck M, ..., Lindström ES, Garcia SL mSystems 5 (5) - 2020-09-29 2020-09-29
Discovery of Proteolysis-Targeting Chimera Molecules that Selectively Degrade the IRAK3 Pseudokinase. Degorce SL, Tavana O, Banks E, ..., Yang B, Edmondson SD J Med Chem 63 (18) 10460-10473 2020-09-24 2020-09-14
Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning. Mohammadi E, Benfeitas R, Turkez H, ..., Uhlen M, Mardinoglu A Cancers (Basel) 12 (9) - 2020-09-21 2020-09-21
Compositional and functional differences of the mucosal microbiota along the intestine of healthy individuals. Vaga S, Lee S, Ji B, ..., Engstrand L, Shoaie S Sci Rep 10 (1) 14977 2020-09-11 2020-09-11
Disease, Drugs and Dysbiosis: Understanding Microbial Signatures in Metabolic Disease and Medical Interventions. Proffitt C, Bidkhori G, Moyes D, Shoaie S Microorganisms 8 (9) - 2020-09-09 2020-09-09
Safety Assessments of Nickel Boride Nanoparticles on the Human Pulmonary Alveolar Cells by Using Cell Viability and Gene Expression Analyses. Türkez H, Arslan ME, Sönmez E, ..., Açikyildiz M, Mardinoğlu A Biol Trace Elem Res - (-) - 2020-09-09 2020-09-09
Integration of molecular profiles in a longitudinal wellness profiling cohort. Tebani A, Gummesson A, Zhong W, ..., Uhlen M, Fagerberg L Nat Commun 11 (1) 4487 2020-09-08 2020-09-08
Towards policies that capture the expected value of biomolecular diversity for drug discovery, human health, and well-being Pesic M, Dilfuza E, Bartlomiej K, ..., S NV, Alexander K Biologia Futura - (-) - 2020-09-07 -
Anticancer effects of novel NSAIDs derivatives on cultured human glioblastoma cells. Özdemir Ö, Marinelli L, Cacciatore I, ..., Mardinoglu A, Turkez H Z Naturforsch C J Biosci - (-) - 2020-09-04 2020-09-04
The RNA exosome shapes the expression of key protein-coding genes. Wu M, Karadoulama E, Lloret-Llinares M, ..., Jensen TH, Sandelin A Nucleic Acids Res. 48 (15) 8509-8528 2020-09-04 2020-07-28
Corrigendum to "Monoamine oxidase A genotype and methylation moderate the association of maltreatment and aggressive behaviour" [Behav. Brain Res. 382 (2020) 112476]. Checknita D, Bendre M, Ekström TJ, ..., Hodgins S, Nilsson KW Behav. Brain Res. 393 (-) 112721 2020-09-01 2020-06-23
Perspectives from Ten Years of Protist Studies by High‐Throughput Metabarcoding Santoferrara L, Burki F, Filker S, ..., Dunthorn M, McManus GB J. Eukaryot. Microbiol. 67 (5) 612-622 2020-09-00 2020-07-02
Systems Biology: A Multi-Omics Integration Approach to Metabolism and the Microbiome. Son JW, Shoaie S, Lee S Endocrinol Metab (Seoul) 35 (3) 507-514 2020-09-00 2020-09-22
PhenoChip: A single-cell phenomic platform for high-throughput photophysiological analyses of microalgae. Behrendt L, Salek MM, Trampe EL, ..., Kühl M, Stocker R Sci Adv 6 (36) - 2020-09-00 2020-09-02
Tracking the motion of the K V 1.2 voltage sensor reveals the molecular perturbations caused by a de novo mutation in a case of epilepsy. Pantazis A, Kaneko M, Angelini M, ..., Saitta SC, Olcese R J. Physiol. (Lond.) - (-) - 2020-08-24 2020-08-24
A molecular timescale for the origin of red algal-derived plastids Strassert JFH, Irisarri I, Williams TA, Burki F - - (-) - 2020-08-21 2020-08-21
Structural basis of mitochondrial translation Aibara S, Singh V, Modelska A, Amunts A Elife 9 (-) - 2020-08-19 2020-08-19
Unexpected Acetylation of Endogenous Aliphatic Amines by Arylamine N-Acetyltransferase NAT2. Conway LP, Rendo V, Correia MSP, ..., Sjöblom T, Globisch D Angew. Chem. Int. Ed. Engl. 59 (34) 14342-14346 2020-08-17 2020-07-08
Drug Repositioning for P-Glycoprotein Mediated Co-Expression Networks in Colorectal Cancer. Beklen H, Gulfidan G, Arga KY, Mardinoglu A, Turanli B Front Oncol 10 (-) 1273 2020-08-13 2020-08-13
Transcriptional mutagenesis dramatically alters genome-wide p53 transactivation landscape. Liang S, Ezerskyte M, Wang J, Pelechano V, Dreij K Sci Rep 10 (1) 13513 2020-08-11 2020-08-11
Quantification of aromatase binding in the female human brain using [ 11 C]cetrozole positron emission tomography. Jonasson M, Nordeman P, Eriksson J, ..., Lubberink M, Comasco E J Neurosci Res - (-) - 2020-08-06 2020-08-06
Phylogenomic Insights into the Origin of Primary Plastids Irisarri I, Strassert JFH, Burki F - - (-) - 2020-08-04 2020-08-04
Human RTEL1 associates with Poldip3 to facilitate responses to replication stress and R-loop resolution. Björkman A, Johansen SL, Lin L, ..., Bartek J, Schou KB Genes Dev. 34 (15-16) 1065-1074 2020-08-01 2020-06-19
GPCRmd uncovers the dynamics of the 3D-GPCRome Rodríguez-Espigares I, Torrens-Fontanals M, Tiemann JKS, ..., Guixà-González R, Selent J Nat Methods 17 (8) 777-787 2020-08-00 2020-07-13
Human ovarian cancer intrinsic mechanisms regulate lymphocyte activation in response to immune checkpoint blockade. Natoli M, Bonito N, Robinson JD, Ghaem-Maghami S, Mao Y Cancer Immunol. Immunother. 69 (8) 1391-1401 2020-08-00 2020-03-21
Neuroprotective effects of boron nitride nanoparticles in the experimental Parkinson's disease model against MPP+ induced apoptosis. Küçükdoğru R, Türkez H, Arslan ME, ..., Cacciatore I, Di Stefano A Metab Brain Dis 35 (6) 947-957 2020-08-00 2020-03-25
Apparent stiffness of vimentin intermediate filaments in living cells and its relation with other cytoskeletal polymers. Smoler M, Coceano G, Testa I, Bruno L, Levi V Biochim Biophys Acta Mol Cell Res 1867 (8) 118726 2020-08-00 2020-04-19
Predatory colponemids are the sister group to all other alveolates Tikhonenkov DV, Strassert JFH, Janouškovec J, ..., Burki F, Keeling PJ Mol. Phylogenet. Evol. 149 (-) 106839 2020-08-00 2020-08-00
Interference with pancreatic sympathetic signaling halts the onset of diabetes in mice. Christoffersson G, Ratliff SS, von Herrath MG Sci Adv 6 (35) - 2020-08-00 2020-08-26
Automated GMP-Compliant Production of [ 68Ga]Ga-DO3A-Tuna-2 for PET Microdosing Studies of the Glucagon Receptor in Humans. Wagner M, Doverfjord JG, Tillner J, ..., Eriksson O, Velikyan I Pharmaceuticals (Basel, Switzerland) 13 (8) - 2020-07-31 2020-07-31
DNA surface exploration and operator bypassing during target search Marklund E, van Oosten B, Mao G, ..., Elf J, Deindl S Nature 583 (7818) 858-861 2020-07-30 2020-06-24
Current Status of COVID-19 Therapies and Drug Repositioning Applications. Altay O, Mohammadi E, Lam S, ..., Uhlen M, Mardinoglu A iScience 23 (7) 101303 2020-07-24 2020-06-20
Model membrane systems to reconstitute immune cell signaling. Céspedes PF, Beckers D, Dustin ML, Sezgin E FEBS J. - (-) - 2020-07-18 2020-07-18
Systems Biology Approaches to Understand the Host-Microbiome Interactions in Neurodegenerative Diseases. Rosario D, Boren J, Uhlen M, ..., Mardinoglu A, Shoaie S Front Neurosci 14 (-) 716 2020-07-08 2020-07-08
Pulsed Electric Fields Can Create Pores in the Voltage Sensors of Voltage-Gated Ion Channels. Rems L, Kasimova MA, Testa I, Delemotte L Biophys. J. 119 (1) 190-205 2020-07-07 2020-06-08
EukProt: a database of genome-scale predicted proteins across the diversity of eukaryotic life Richter DJ, Berney C, Strassert JFH, Burki F, de Vargas C - - (-) - 2020-07-01 2020-07-01
Rapid Detection of COVID-19 Coronavirus Using a Reverse Transcriptional Loop-Mediated Isothermal Amplification (RT-LAMP) Diagnostic Platform. Yu L, Wu S, Hao X, ..., Chen WH, Yin X Clin. Chem. 66 (7) 975-977 2020-07-01 2020-04-22
Quo vadis microRNAs? Fromm B, Keller A, Yang X, ..., Peterson KJ, Griffiths-Jones S Trends in Genetics 36 (7) 461-463 2020-07-00 2020-04-16
A systems biology approach for studying neurodegenerative diseases. Lam S, Bayraktar A, Zhang C, ..., Uhlen M, Mardinoglu A Drug Discov. Today 25 (7) 1146-1159 2020-07-00 2020-05-19
Influenza A viruses use multivalent sialic acid clusters for cell binding and receptor activation. Sieben C, Sezgin E, Eggeling C, Manley S PLoS Pathog 16 (7) e1008656 2020-07-00 2020-07-08
Site-Specific Incorporation of Two ncAAs for Two-Color Bioorthogonal Labeling and Crosslinking of Proteins on Live Mammalian Cells. Meineke B, Heimgärtner J, Eirich J, Landreh M, Elsässer SJ Cell Reports 31 (12) 107811 2020-06-23 2020-06-25
Skeletal Muscle Transcriptomic Comparison between Long-Term Trained and Untrained Men and Women. Chapman MA, Arif M, Emanuelsson EB, ..., Mardinoglu A, Sundberg CJ Cell Reports 31 (12) 107808 2020-06-23 2020-06-25
Adipose tissue morphology, imaging and metabolomics predicting cardiometabolic risk and family history of type 2 diabetes in non-obese men. Rawshani A, Eliasson B, Rawshani A, ..., Rosengren A, Smith U Sci Rep 10 (1) 9973 2020-06-19 2020-06-19
Successful delivery of large-size CRISPR/Cas9 vectors in hard-to-transfect human cells using small plasmids. Søndergaard JN, Geng K, Sommerauer C, ..., Yin X, Kutter C Commun Biol 3 (1) 319 2020-06-19 2020-06-19
Ciliate mitoribosome illuminates evolutionary steps of mitochondrial translation Tobiasson V, Amunts A Elife 9 (-) e59264 2020-06-18 2020-06-18
Chaining with Overlaps Revisited Sahlin K, Mäkinen V 31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020) 161 (-) 25:1--25:12 2020-06-09 2020-06-09
Sensitive mass spectrometric analysis of carbonyl metabolites in human urine and fecal samples using chemoselective modification. Lin W, Conway LP, Block A, ..., Löhr JM, Globisch D Analyst 145 (11) 3822-3831 2020-06-07 2020-05-12
Dose and time effects of solar-simulated ultraviolet radiation on the in vivo human skin transcriptome. Bustamante M, Hernandez-Ferrer C, Tewari A, ..., Nieuwenhuijsen M, Young AR Br. J. Dermatol. 182 (6) 1458-1468 2020-06-00 2019-11-27
Improvement in the Current Therapies for Hepatocellular Carcinoma Using a Systems Medicine Approach. Ozcan M, Altay O, Lam S, ..., Boren J, Mardinoglu A Adv Biosyst 4 (6) e2000030 2020-06-00 2020-04-08
Plasma membranes are asymmetric in lipid unsaturation, packing and protein shape. Lorent JH, Levental KR, Ganesan L, ..., Lyman E, Levental I Nat. Chem. Biol. 16 (6) 644-652 2020-06-00 2020-05-04
Germ-free and microbiota-associated mice yield small intestinal epithelial organoids with equivalent and robust transcriptome/proteome expression phenotypes. Hausmann A, Russo G, Grossmann J, ..., Sellin ME, Hardt WD Cell. Microbiol. 22 (6) e13191 2020-06-00 2020-03-04
Intrinsic Dissolution Rate Profiling of Poorly Water-Soluble Compounds in Biorelevant Dissolution Media. Teleki A, Nylander O, Bergström CAS Pharmaceutics 12 (6) - 2020-05-28 2020-05-28
Shift in ecological strategy helps marginal populations of shepherd's purse ( Capsella bursa-pastoris) to overcome a high genetic load. Orsucci M, Milesi P, Hansen J, ..., Glémin S, Lascoux M Proc. Biol. Sci. 287 (1927) 20200463 2020-05-27 2020-05-20
Transcript isoform sequencing reveals widespread promoter-proximal transcriptional termination in Arabidopsis. Thomas QA, Ard R, Liu J, ..., Pelechano V, Marquardt S Nat Commun 11 (1) 2589 2020-05-22 2020-05-22
Integrating the "Immunome" in the Stratification of Myelodysplastic Syndromes and Future Clinical Trial Design. Winter S, Shoaie S, Kordasti S, Platzbecker U J Clin Oncol 38 (15) 1723-1735 2020-05-20 2020-02-14
z-STED Imaging and Spectroscopy to Investigate Nanoscale Membrane Structure and Dynamics. Barbotin A, Urbančič I, Galiani S, ..., Booth M, Sezgin E Biophys. J. 118 (10) 2448-2457 2020-05-19 2020-04-16
Histidyl-Proline Diketopiperazine Isomers as Multipotent Anti-Alzheimer Drug Candidates. Turkez H, Cacciatore I, Arslan ME, ..., Di Stefano A, Mardinoglu A Biomolecules 10 (5) - 2020-05-09 2020-05-09
Predicting resolution and image quality in RESOLFT and other point scanning microscopes [Invited]. Bodén A, Casas Moreno X, Cooper BK, York AG, Testa I Biomed Opt Express 11 (5) 2313-2327 2020-05-01 2020-04-02
Salmonella Typhimurium discreet-invasion of the murine gut absorptive epithelium. Fattinger SA, Böck D, Di Martino ML, ..., Hardt WD, Sellin ME PLoS Pathog 16 (5) e1008503 2020-05-00 2020-05-04
Intestinal epithelial NAIP/NLRC4 restricts systemic dissemination of the adapted pathogen Salmonella Typhimurium due to site-specific bacterial PAMP expression. Hausmann A, Böck D, Geiser P, ..., Sellin ME, Hardt WD Mucosal Immunol 13 (3) 530-544 2020-05-00 2020-01-17
News ways of understanding the complex biology of diabetes using PET. Eriksson O, Långström B, Antoni G Nucl. Med. Biol. - (-) - 2020-04-27 2020-04-27
In vitro neuroprotective effects of farnesene sesquiterpene on alzheimer's disease model of differentiated neuroblastoma cell line. Arslan ME, Türkez H, Mardinoğlu A Int J Neurosci - (-) 1-10 2020-04-19 2020-04-19
Genome-Scale Metabolic Modeling of Glioblastoma Reveals Promising Targets for Drug Development. Larsson I, Uhlén M, Zhang C, Mardinoglu A Front Genet 11 (-) 381 2020-04-17 2020-04-17
High photon count rates improve the quality of super-resolution fluorescence fluctuation spectroscopy Schneider F, Hernandez-Varas P, Christoffer Lagerholm B, ..., Eggeling C, Urbančič I J. Phys. D: Appl. Phys. 53 (16) 164003 2020-04-15 2020-02-13
The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling Sommer ME, Selent J, Carlsson J, ..., Waldhoer M, Kolb P ACS pharmacology & translational science 3 (2) 361-370 2020-04-10 2020-03-31
The in vitro cytotoxic, genotoxic, and oxidative damage potentials of the oral artificial sweetener aspartame on cultured human blood cells Çadirci K, Özdemir Tozlu Ö, Türkez H, Mardinoğlu A Turk J Med Sci 50 (2) 448-454 2020-04-09 2020-04-09
De Novo Clustering of Long-Read Transcriptome Data Using a Greedy, Quality Value-Based Algorithm Sahlin K, Medvedev P J. Comput. Biol. 27 (4) 472-484 2020-04-01 2020-04-01
Neuroimaging premenstrual dysphoric disorder: A systematic and critical review. Dubol M, Epperson CN, Lanzenberger R, Sundström-Poromaa I, Comasco E Front Neuroendocrinol 57 (-) 100838 2020-04-00 2020-04-05
The acute effect of metabolic cofactor supplementation: a potential therapeutic strategy against non-alcoholic fatty liver disease. Zhang C, Bjornson E, Arif M, ..., Borén J, Mardinoglu A Mol Syst Biol 16 (4) e9495 2020-04-00 2020-04-28
An adipocyte-specific defect in oxidative phosphorylation increases systemic energy expenditure and protects against diet-induced obesity in mouse models. Choi MJ, Jung SB, Lee SE, ..., Yi HS, Shong M Diabetologia 63 (4) 837-852 2020-04-00 2020-01-10
An atlas of human metabolism. Robinson JL, Kocabaş P, Wang H, ..., Uhlén M, Nielsen J Sci Signal 13 (624) - 2020-03-24 2020-03-24
Addressing the heterogeneity in liver diseases using biological networks. Lam S, Doran S, Yuksel HH, ..., Uhlen M, Mardinoglu A Brief. Bioinformatics - (-) - 2020-03-23 2020-03-23
Monoamine oxidase A genotype and methylation moderate the association of maltreatment and aggressive behaviour. Checknita D, Bendre M, Ekström TJ, ..., Hodgins S, Nilsson KW Behav. Brain Res. 382 (-) 112476 2020-03-16 2020-01-10
Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity Jaiteh M, Rodríguez-Espigares I, Selent J, Carlsson J PLoS Comput Biol 16 (3) e1007680 2020-03-13 2020-03-13
An atlas of the protein-coding genes in the human, pig, and mouse brain. Sjöstedt E, Zhong W, Fagerberg L, ..., Uhlén M, Mulder J Science (New York, N.Y.) 367 (6482) - 2020-03-06 2020-03-07
MEMOTE for standardized genome-scale metabolic model testing. Lieven C, Beber ME, Olivier BG, ..., Zakhartsev M, Zhang C Nat. Biotechnol. 38 (3) 272-276 2020-03-00 2020-03-04
Life in the dark: far-red absorbing cyanobacteria extend photic zones deep into terrestrial caves. Behrendt L, Trampe EL, Nord NB, ..., Hershey OS, Barton H Environ. Microbiol. 22 (3) 952-963 2020-03-00 2019-09-09
Structure of a minimal photosystem I from the green alga Dunaliella salina. Perez-Boerema A, Klaiman D, Caspy I, ..., Amunts A, Nelson N Nat Plants 6 (3) 321-327 2020-03-00 2020-03-02
Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity. Jamy M, Foster R, Barbera P, ..., Bass D, Burki F Mol Ecol Resour 20 (2) 429-443 2020-03-00 2019-11-29
Distinct structural modulation of photosystem I and lipid environment stabilizes its tetrameric assembly Chen M, Perez-Boerema A, Zhang L, ..., Li S, Amunts A Nat Plants 6 (3) 314-320 2020-03-00 2020-03-09
Impact of Nanoscale Hindrances on the Relationship between Lipid Packing and Diffusion in Model Membranes. Beckers D, Urbancic D, Sezgin E J Phys Chem B 124 (8) 1487-1494 2020-02-27 2020-02-18
A comprehensive analysis of coding and non-coding transcriptomic changes in cutaneous squamous cell carcinoma. Das Mahapatra K, Pasquali L, Søndergaard JN, ..., Kristensen LS, Pivarcsi A Sci Rep 10 (1) 3637 2020-02-27 2020-02-27
Energy Landscapes Reveal Agonist Control of G Protein-Coupled Receptor Activation via Microswitches. Fleetwood O, Matricon P, Carlsson J, Delemotte L Biochemistry 59 (7) 880-891 2020-02-25 2020-02-07
Biophysical Characterization of Epigallocatechin-3-Gallate Effect on the Cardiac Sodium Channel Na v1.5. Amarouch MY, Kurt H, Delemotte L, Abriel H Molecules 25 (4) - 2020-02-18 2020-02-18
Creating Supported Plasma Membrane Bilayers Using Acoustic Pressure. Sezgin E, Carugo D, Levental I, Stride E, Eggeling C Membranes (Basel) 10 (2) - 2020-02-18 2020-02-18
Radial Organization in the Mammalian Nucleus. Crosetto N, Bienko M Front Genet 11 (-) 33 2020-02-12 2020-02-12
Regulation of lipid saturation without sensing membrane fluidity. Ballweg S, Sezgin E, Doktorova M, ..., Hummer G, Ernst R Nat Commun 11 (1) 756 2020-02-06 2020-02-06
Molecular Insights from Conformational Ensembles via Machine Learning. Fleetwood O, Kasimova MA, Westerlund AM, Delemotte L Biophys. J. 118 (3) 765-780 2020-02-04 2019-12-21
Abundance and diversity of resistomes differ between healthy human oral cavities and gut. Carr VR, Witherden EA, Lee S, ..., Gomez-Cabrero D, Moyes DL Nat Commun 11 (1) 693 2020-02-04 2020-02-04
Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API. Desvignes T, Loher P, Eilbeck K, ..., Halushka MK, Pantano L Bioinformatics 36 (3) 698-703 2020-02-01 2019-09-11
Handling ties in continuous outcomes for confounder adjustment with rank-ordered logit and its application to ordinal outcomes. Ning Y, Tan CS, Maraki A, ..., Reilly M, Støer NC Stat Methods Med Res 29 (2) 437-454 2020-02-00 2019-04-03
The molecular basis for sugar import in malaria parasites. Qureshi AA, Suades A, Matsuoka R, ..., Delemotte L, Drew D Nature 578 (7794) 321-325 2020-02-00 2020-01-29
Environmental impacts and limitations of third‐generation biobutanol: Life cycle assessment of n ‐butanol produced by genetically engineered cyanobacteria Nilsson A, Shabestary K, Brandão M, Hudson EP Journal of Industrial Ecology 24 (1) 205-216 2020-02-00 2019-04-00
Classification of clear cell renal cell carcinoma based on PKM alternative splicing. Li X, Turanli B, Juszczak K, ..., Zhang C, Mardinoglu A Heliyon 6 (2) e03440 2020-02-00 2020-02-19
Boosting Natural Killer Cell-Mediated Targeting of Sarcoma Through DNAM-1 and NKG2D. Sayitoglu EC, Georgoudaki AM, Chrobok M, ..., Sutlu T, Duru AD Front Immunol 11 (-) 40 2020-01-28 2020-01-28
Docking Finds GPCR Ligands in Dark Chemical Matter Ballante F, Rudling A, Zeifman A, ..., Loza MI, Carlsson J J. Med. Chem. 63 (2) 613-620 2020-01-23 2019-12-17
Novel anti-Alzheimer phenol-lipoyl hybrids: Synthesis, physico-chemical characterization, and biological evaluation. Pagoni A, Marinelli L, Di Stefano A, ..., Vassiliou S, Cacciatore I Eur J Med Chem 186 (-) 111880 2020-01-15 2019-11-12
A set of monomeric near-infrared fluorescent proteins for multicolor imaging across scales. Matlashov ME, Shcherbakova DM, Alvelid J, ..., Testa I, Verkhusha VV Nat Commun 11 (1) 239 2020-01-13 2020-01-13
Three dimensional parallelized RESOLFT nanoscopy for volumetric live cell imaging Bodén A, Pennacchietti F, Testa I - - (-) - 2020-01-09 2020-01-09
Stable stimulated emission depletion imaging of extended sample regions Alvelid J, Testa I J. Phys. D: Appl. Phys. 53 (2) 024001 2020-01-09 2019-10-25
MirGeneDB 2.0: the metazoan microRNA complement. Fromm B, Domanska D, Høye E, ..., Friedländer MR, Peterson KJ Nucleic Acids Res. 48 (D1) D1172 2020-01-08 2019-10-24
The GenTree Dendroecological Collection, tree-ring and wood density data from seven tree species across Europe. Martínez-Sancho E, Slámová L, Morganti S, ..., Westin J, Fonti P Sci Data 7 (1) 1 2020-01-02 2020-01-02
Protein aggregation in bacteria. Schramm FD, Schroeder K, Jonas K FEMS Microbiol Rev 44 (1) 54-72 2020-01-01 2019-10-22
Advances in GLP-1 receptor targeting radiolabeled agent development and prospective of theranostics. Velikyan I, Eriksson O Theranostics 10 (1) 437-461 2020-01-01 2020-01-01
The New Tree of Eukaryotes Burki F, Roger AJ, Brown MW, Simpson AGB Trends in Ecology & Evolution 35 (1) 43-55 2020-01-00 2020-01-00
Ontogenic succession of thermokarst thaw ponds is linked to dissolved organic matter quality and microbial degradation potential Peura S, Wauthy M, Simone D, ..., Rautio M, Bertilsson S Limnol. Oceanogr. 65 (S1) - 2020-01-00 2020-01-00
Non‐cyanobacterial diazotrophs dominate nitrogen‐fixing communities in permafrost thaw ponds Fernandez L, Bertilsson S, Peura S Limnol. Oceanogr. 65 (S1) - 2020-01-00 2020-01-00
Super-resolution RESOLFT microscopy of lipid bilayers using a fluorophore-switch dyad Frawley AT, Wycisk V, Xiong Y, ..., Eggeling C, Anderson HL Chem Sci 11 (33) 8955-8960 2020-00-00 2020-00-00