Tanja Slotte

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SciLifeLab Fellow since 2014.

Primary: Shown in the list of current labels.

Year 2025

DOI Crossref
“Universal Hyb-Seq kits capture considerable intraspecific variation: Less is more in herbarium-inclusive molecular ecology”
Woudstra Y, Quatela AS, Wagemaker NC, ..., Gravendeel B, Verhoeven KJ
- - (-) - [2025-10-15; online 2025-10-15]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution.
Zervakis PI, Postel Z, Losvik A, ..., Churcher A, Slotte T
New Phytol. 247 (6) 2964-2981 [2025-09-00; online 2025-07-18]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Whole-genome duplication increases genetic diversity and load in outcrossing Arabidopsis arenosa.
Vlček J, Hämälä T, Vives Cobo C, ..., Yant L, Kolář F
Proc. Natl. Acad. Sci. U.S.A. 122 (31) e2501739122 [2025-08-05; online 2025-07-30]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution
Zervakis PI, Postel Z, Losvik A, ..., Churcher A, Slotte T
- - (-) - [2025-04-17; online 2025-04-17]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Whole-genome duplication increases genetic diversity and load in outcrossing Arabidopsis
Vlček J, Hämälä T, Cobo CV, ..., Yant L, Kolář F
- - (-) - [2025-01-15; online 2025-01-15]
SciLifeLab Fellow Tanja Slotte

Year 2024

PubMed DOI Crossref
Single-cell transcriptomics reveal transcriptional programs underlying male and female cell fate during Plasmodium falciparum gametocytogenesis.
Mohammed M, Dziedziech A, Macedo D, ..., Henriksson J, Ankarklev J
Nat Commun 15 (1) 7177 [2024-08-26; online 2024-08-26]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genetic Causes and Genomic Consequences of Breakdown of Distyly in Linum trigynum.
Gutiérrez-Valencia J, Zervakis PI, Postel Z, ..., Arroyo J, Slotte T
Mol. Biol. Evol. 41 (5) - [2024-05-03; online 2024-05-06]
SciLifeLab Fellow Tanja Slotte

Year 2023

DOI Crossref
Genetic causes and genomic consequences of breakdown of distyly in Linum trigynum
Gutiérrez-Valencia J, Zervakis PI, Postel Z, ..., Arroyo J, Slotte T
- - (-) - [2023-11-17; online 2023-11-17]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Development of microsatellite markers for sister species Linum suffruticosum and Linum tenuifolium in their overlapping ranges.
Olmedo-Vicente E, Désamoré A, Simón-Porcar VI, Slotte T, Arroyo J
Mol. Biol. Rep. 50 (9) 7927-7933 [2023-09-00; online 2023-07-17]
SciLifeLab Fellow Tanja Slotte

Year 2022

DOI Crossref
Lineage-specific targets of positive selection in three leaf beetles with different defence capacity against a parasitic wasp
Yang X, Wheat C, Slotte T, Hamback P
- - (-) - [2022-11-04; online 2022-11-04]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level.
Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T
Curr. Biol. 32 (20) 4360-4371.e6 [2022-10-24; online 2022-09-09]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?
Birkeland S, Slotte T, Krag Brysting A, ..., Brochmann C, Nowak MD
Mol. Ecol. 31 (16) 4271-4285 [2022-08-00; online 2022-07-15]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Mutation accumulation opposes polymorphism: supergenes and the curious case of balanced lethals.
Berdan EL, Blanckaert A, Butlin RK, ..., Slotte T, Wielstra B
Philos. Trans. R. Soc. Lond., B, Biol. Sci. 377 (1856) 20210199 [2022-08-00; online 2022-06-13]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Potato genomes pave the way to crop improvement.
Gutiérrez-Valencia J, Slotte T
Nature 606 (7914) 472-473 [2022-06-00; online 2022-06-09]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Genomic analyses of the Linum distyly supergene reveal convergent evolution at the molecular level
Gutiérrez-Valencia J, Fracassetti M, Berdan EL, ..., Arroyo J, Slotte T
- - (-) - [2022-05-29; online 2022-05-29]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina.
Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T
Mol. Biol. Evol. 39 (1) - [2022-01-07; online 2021-12-09]
SciLifeLab Fellow Tanja Slotte

Year 2021

PubMed DOI Crossref
Selection on Accessible Chromatin Regions in Capsella grandiflora.
Horvath R, Josephs EB, Pesquet E, ..., Scofield D, Slotte T
Mol. Biol. Evol. 38 (12) 5563-5575 [2021-12-09; online 2021-09-10]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
What can cold-induced transcriptomes of Arctic Brassicaceae tell us about the evolution of cold tolerance?
Birkeland S, Slotte T, Brysting AK, ..., Brochmann C, Nowak MD
- - (-) - [2021-12-05; online 2021-12-05]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Genomic Signatures of Sexual Selection on Pollen-Expressed Genes in Arabis alpina
Gutiérrez-Valencia J, Fracassetti M, Horvath R, ..., Kolář F, Slotte T
- - (-) - [2021-09-03; online 2021-09-03]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genome assemblies of three closely related leaf beetle species (Galerucella spp.).
Yang X, Slotte T, Dainat J, Hambäck PA
G3 11 (8) - [2021-08-07; online 2021-12-02]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
On the origin of the widespread self-compatible allotetraploid Capsella bursa-pastoris (Brassicaceae).
Bachmann JA, Tedder A, Fracassetti M, ..., Köhler C, Slotte T
Heredity (Edinb) 127 (1) 124-134 [2021-07-00; online 2021-04-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Unboxing mutations: Connecting mutation types with evolutionary consequences.
Berdan EL, Blanckaert A, Slotte T, ..., Westram AM, Fragata I
Mol. Ecol. 30 (12) 2710-2723 [2021-06-00; online 2021-05-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives.
Bohutínská M, Vlček J, Yair S, ..., Slotte T, Kolář F
Proc. Natl. Acad. Sci. U.S.A. 118 (21) - [2021-05-25; online 2021-05-19]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
The Genomic Architecture and Evolutionary Fates of Supergenes.
Gutiérrez-Valencia J, Hughes PW, Berdan EL, Slotte T
Genome Biol Evol 13 (5) - [2021-05-07; online 2021-03-20]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
The genome of Draba nivalis shows signatures of adaptation to the extreme environmental stresses of the Arctic.
Nowak MD, Birkeland S, Mandáková T, ..., Lysak MA, Brochmann C
Mol Ecol Resour 21 (3) 661-676 [2021-04-00; online 2020-11-12]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm.
Dziasek K, Simon L, Lafon-Placette C, ..., Slotte T, Köhler C
PLoS Genet 17 (2) e1009370 [2021-02-00; online 2021-02-11]
SciLifeLab Fellow Tanja Slotte

Year 2020

PubMed DOI Crossref
HEARTBREAK Controls Post-translational Modification of INDEHISCENT to Regulate Fruit Morphology in Capsella.
Dong Y, Majda M, Šimura J, ..., Smith RS, Østergaard L
Curr. Biol. 30 (19) 3880-3888.e5 [2020-10-05; online 2020-08-13]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Hybrid seed incompatibility in Capsella is connected to chromatin condensation defects in the endosperm
Dziasek K, Simon L, Placette CL, ..., Slotte T, Köhler C
- - (-) - [2020-09-03; online 2020-09-03]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Differential Expression of Immune Genes between Two Closely Related Beetle Species with Different Immunocompetence following Attack by Asecodes parviclava.
Yang X, Fors L, Slotte T, ..., Wheat CW, Hambäck PA
Genome Biol Evol 12 (5) 522-534 [2020-05-01; online 2020-04-14]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Genomic basis of parallel adaptation varies with divergence in Arabidopsis and its relatives
Bohutínská M, Vlček J, Yair S, ..., Slotte T, Kolář F
bioRxiv - (-) - [2020-03-25; online 2020-03-25]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Population Genomics of Transitions to Selfing in Brassicaceae Model Systems.
Mattila TM, Laenen B, Slotte T
Methods in molecular biology (Clifton, N.J.) 2090 (-) 269-287 [2020-01-25; online 2020-01-25]
SciLifeLab Fellow Tanja Slotte

Year 2019

PubMed DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella.
Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T
New Phytol. 224 (1) 505-517 [2019-10-00; online 2019-08-01]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Impact of demography on linked selection in two outcrossing Brassicaceae species.
Mattila TM, Laenen B, Horvath R, ..., Savolainen O, Slotte T
Ecol Evol 9 (17) 9532-9545 [2019-09-00; online 2019-08-13]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Single-cell expression noise and gene-body methylation in Arabidopsis thaliana.
Horvath R, Laenen B, Takuno S, Slotte T
Heredity (Edinb) 123 (2) 81-91 [2019-08-00; online 2019-01-16]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Shotgun Environmental DNA, Pollen, and Macrofossil Analysis of Lateglacial Lake Sediments From Southern Sweden
Parducci L, Alsos IG, Unneberg P, ..., Slotte T, Wohlfarth B
Front. Ecol. Evol. 7 (-) - [2019-06-20; online 2019-06-20]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa.
Monnahan P, Kolář F, Baduel P, ..., Bomblies K, Yant L
Nat Ecol Evol 3 (3) 457-468 [2019-03-00; online 2019-02-25]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Long-term balancing selection drives evolution of immunity genes in Capsella.
Koenig D, Hagmann J, Li R, ..., Wright SI, Weigel D
Elife 8 (-) - [2019-02-26; online 2019-02-26]
SciLifeLab Fellow Tanja Slotte

Year 2018

DOI Crossref
Genetic basis and timing of a major mating system shift in Capsella
Bachmann JA, Tedder A, Laenen B, ..., Castric V, Slotte T
bioRxiv - (-) - [2018-09-24; online 2018-09-24]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Pervasive population genomic consequences of genome duplication in Arabidopsis arenosa
Monnahan P, Kolář F, Baduel P, ..., Bomblies K, Yant L
- - (-) - [2018-09-07; online 2018-09-07]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Interspecific variation in ploidy as a key plant trait outlining local extinction risks and community patterns in fragmented landscapes
Plue J, Kimberley A, Slotte T
Funct Ecol 32 (8) 2095-2106 [2018-08-00; online 2018-05-22]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Paternally expressed imprinted genes associate with hybridization barriers in Capsella.
Lafon-Placette C, Hatorangan MR, Steige KA, ..., Slotte T, Köhler C
Nat Plants 4 (6) 352-357 [2018-06-00; online 2018-05-28]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Targeted Long-Read Sequencing of a Locus Under Long-Term Balancing Selection in Capsella.
Bachmann JA, Tedder A, Laenen B, Steige KA, Slotte T
G3 8 (4) 1327-1333 [2018-03-28; online 2018-03-28]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
DOI Crossref
Archaeal community changes in Lateglacial lake sediments: Evidence from ancient DNA
Ahmed E, Parducci L, Unneberg P, ..., Slotte T, Wohlfarth B
Quaternary Science Reviews 181 (-) 19-29 [2018-02-00; online 2018-02-00]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina.
Laenen B, Tedder A, Nowak MD, ..., Coupland G, Slotte T
Proc. Natl. Acad. Sci. U.S.A. 115 (4) 816-821 [2018-01-23; online 2018-01-04]
Affiliated researcher SciLifeLab Fellow Tanja Slotte

Year 2017

PubMed DOI Crossref
The Role of Small RNA-Based Epigenetic Silencing for Purifying Selection on Transposable Elements in Capsella grandiflora.
Horvath R, Slotte T
Genome Biol Evol 9 (10) 2911-2920 [2017-10-01; online 2017-10-17]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Demography and mating system shape the genome-wide impact of purifying selection in Arabis alpina
Laenen B, Tedder A, Nowak MD, ..., Coupland G, Slotte T
bioRxiv - (-) - [2017-05-04; online 2017-05-04]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic analysis reveals major determinants of cis-regulatory variation in Capsella grandiflora.
Steige KA, Laenen B, Reimegård J, Scofield DG, Slotte T
Proc. Natl. Acad. Sci. U.S.A. 114 (5) 1087-1092 [2017-01-31; online 2017-01-17]
Affiliated researcher SciLifeLab Fellow Tanja Slotte

Year 2016

PubMed DOI Crossref
Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae.
Hatorangan MR, Laenen B, Steige KA, Slotte T, Köhler C
Plant Cell 28 (8) 1815-1827 [2016-08-00; online 2016-07-27]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy.
Steige KA, Slotte T
Current Opinion in Plant Biology 30 (-) 88-93 [2016-04-00; online 2016-03-01]
Affiliated researcher SciLifeLab Fellow Tanja Slotte
DOI Crossref
The role of transposable elements for gene expression in Capsella hybrids and allopolyploids
Steige KA, Reimegård J, Rebernig CA, ..., Scofield DG, Slotte T
- - (-) - [2016-03-16; online 2016-03-16]
SciLifeLab Fellow Tanja Slotte

Year 2015

PubMed DOI Crossref
Non-reciprocal Interspecies Hybridization Barriers in the Capsella Genus Are Established in the Endosperm.
Rebernig CA, Lafon-Placette C, Hatorangan MR, Slotte T, Köhler C
PLoS Genet 11 (6) e1005295 [2015-06-00; online 2015-06-18]
SciLifeLab Fellow Tanja Slotte

Year 2012

PubMed DOI Crossref
Coalescent-Based Analysis Distinguishes between Allo- and Autopolyploid Origin in Shepherd's Purse (Capsella bursa-pastoris)
St. Onge KR, Foxe JP, Li J, ..., Lascoux M, Wright SI
Molecular Biology and Evolution 29 (7) 1721-1733 [2012-07-01; online 2012-01-27]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Genetic architecture and adaptive significance of the selfing syndrome in Capsella.
Slotte T, Hazzouri KM, Stern D, Andolfatto P, Wright SI
Evolution 66 (5) 1360-1374 [2012-05-00; online 2012-03-03]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella
Gos G, Slotte T, Wright SI
BMC Evol Biol BMC Evolutionary Biology 12 (1) 152 [2012-00-00; online 2012-00-00]
SciLifeLab Fellow Tanja Slotte

Year 2011

PubMed DOI Crossref
Genomic determinants of protein evolution and polymorphism in Arabidopsis.
Slotte T, Bataillon T, Hansen TT, ..., Wright SI, Schierup MH
Genome Biol Evol 3 (-) 1210-1219 [2011-09-16; online 2011-09-16]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems.
St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE
Mol. Ecol. 20 (16) 3306-3320 [2011-08-00; online 2011-07-21]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species
Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D
Genome Biol Evol 3 (-) 868-880 [2011-01-01; online 2011-08-18]
SciLifeLab Fellow Tanja Slotte

Year 2010

PubMed DOI Crossref
Genome-Wide Evidence for Efficient Positive and Purifying Selection in Capsella grandiflora, a Plant Species with a Large Effective Population Size
Slotte T, Foxe JP, Hazzouri KM, Wright SI
Molecular Biology and Evolution 27 (8) 1813-1821 [2010-08-01; online 2010-03-01]
SciLifeLab Fellow Tanja Slotte

Year 2009

PubMed DOI Crossref
Splicing variation at a FLOWERING LOCUS C homeolog is associated with flowering time variation in the tetraploid Capsella bursa-pastoris.
Slotte T, Huang HR, Holm K, ..., Lagercrantz U, Lascoux M
Genetics 183 (1) 337-345 [2009-09-00; online 2009-07-06]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck.
Guo YL, Bechsgaard JS, Slotte T, ..., Weigel D, Schierup MH
Proc. Natl. Acad. Sci. U.S.A. 106 (13) 5246-5251 [2009-03-31; online 2009-03-23]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
Recent speciation associated with the evolution of selfing in Capsella.
Foxe JP, Slotte T, Stahl EA, ..., Hurka H, Wright SI
Proc. Natl. Acad. Sci. U.S.A. 106 (13) 5241-5245 [2009-03-31; online 2009-02-19]
SciLifeLab Fellow Tanja Slotte

Year 2008

PubMed DOI Crossref
Polyploid speciation did not confer instant reproductive isolation in Capsella (Brassicaceae).
Slotte T, Huang H, Lascoux M, Ceplitis A
Mol. Biol. Evol. 25 (7) 1472-1481 [2008-07-00; online 2008-04-15]
SciLifeLab Fellow Tanja Slotte

Year 2007

PubMed DOI Crossref
Differential expression of genes important for adaptation in Capsella bursa-pastoris (Brassicaceae).
Slotte T, Holm K, McIntyre LM, Lagercrantz U, Lascoux M
PLANT PHYSIOLOGY 145 (1) 160-173 [2007-09-00; online 2007-07-13]
SciLifeLab Fellow Tanja Slotte

Year 2006

PubMed DOI Crossref
Intrageneric phylogeny of Capsella (Brassicaceae) and the origin of the tetraploid C. bursa-pastoris based on chloroplast and nuclear DNA sequences.
Slotte T, Ceplitis A, Neuffer B, Hurka H, Lascoux M
American journal of botany 93 (11) 1714-1724 [2006-11-00; online 2006-11-01]
SciLifeLab Fellow Tanja Slotte
SciLifeLab Data Centre
Publications 9.5.1