SciLifeLab Affiliated and Fellows Publications

Fish are poor sentinels for surveillance of riverine antimicrobial resistance.

Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U

One Health 20 (-) 101026 [2025-06-00; online 2025-04-01]

Environmental reservoir of resistance genes for the last resort antibiotic Cefiderocol

Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppe E

- - (-) - [2025-05-26; online 2025-05-26]

Gender differences in global antimicrobial resistance.

Salehi M, Laitinen V, Bhanushali S, ..., Pärnänen K, Lahti L

NPJ Biofilms Microbiomes 11 (1) 79 [2025-05-19; online 2025-05-19]

Community-promoted antibiotic resistance genes show increased dissemination among pathogens

Lund D, Johnning A, Holmström M, ..., Bengtsson-Palme J, Kristiansson E

- - (-) - [2025-05-15; online 2025-05-15]

Occurrence and spread of carbapenemase‐producing Enterobacterales (CPE) in the food chain in the EU/EFTA. Part 1: 2025 update

Allende A, Álvarez‐Ordóñez A, Bortolaia V, ..., Rabbås H, Peixe L

EFSA J 23 (4) - [2025-04-00; online 2025-04-00]

Seal milk oligosaccharides rival human milk complexity and exhibit functional dynamics during lactation

Jin C, Lundstrøm J, Cori CR, ..., Khoo KH, Bojar D

- - (-) - [2025-03-20; online 2025-03-20]

Early gonadotoxic effects of cyclophosphamide on the prepubertal testis and the feasibility of reducing toxicity through combined antioxidant therapy

Eskafinoghani A, Reyes Palomares A, Hao X, ..., Lundberg A, Rodriguez-Walberg KA

- - (-) - [2025-03-19; online 2025-03-19]

Arian Lundberg DDLS Fellow

Applying 3D cultures and high-throughput technologies to study host-pathogen interactions.

De Martinis ECP, Alves VF, Pereira MG, ..., Dannborg M, Bengtsson-Palme J

Front Immunol 16 (-) 1488699 [2025-02-20; online 2025-02-20]

Genetic adaptation to amoxicillin in Escherichia coli: The limited role of dinB and katE.

Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B

PLoS ONE 20 (2) e0312223 [2025-02-19; online 2025-02-19]

PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity

Larralde M, Zeller G, Carroll LM

- - (-) - [2025-02-17; online 2025-02-17]

DDLS Fellow Laura Carroll

Towards an interpretable deep learning model of cancer.

Nilsson A, Meimetis N, Lauffenburger DA

NPJ Precis Oncol 9 (1) 46 [2025-02-14; online 2025-02-14]

Avlant Nilsson DDLS Fellow

The business case for investing in biodiversity data

Hasan F, Nyström J, Andersson C, ..., Johansson V, Andermann T

- - (-) - [2025-02-04; online 2025-02-04]

DDLS Fellow Tobias Andermann

Telomemore enables single-cell analysis of cell cycle and chromatin condensation.

Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J

Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]

DDLS Fellow Laura Carroll

Fluoroquinolone-specific resistance trajectories in E. coli and their dependence on the SOS-response.

Teichmann L, Luitwieler S, Bengtsson-Palme J, Ter Kuile B

BMC Microbiol. 25 (1) 37 [2025-01-21; online 2025-01-21]

Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.

Meimetis N, Lauffenburger DA, Nilsson A

STAR Protoc 6 (1) 103573 [2025-01-16; online 2025-01-16]

Avlant Nilsson DDLS Fellow

DTPPI: predicting drug interactions using a weighted drug-protein network

Szydlik S, Taheri G

- - (-) - [2025-01-08; online 2025-01-08]

DDLS Fellow Golnaz Taheri

Unveiling Driver Modules in Lung Cancer: A Clustering-Based Gene-Gene Interaction Network Analysis

Taheri G, Szalai M, Habibi M, Papapetrou P

- - (-) 41-58 [2025-00-00; online 2025-01-01]

DDLS Fellow Golnaz Taheri

The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape

Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T

- - (-) - [2025-00-00; online 2025-00-00]

DDLS Fellow Tobias Andermann

Strategies for taxonomic and functional annotation of metagenomes

Abramova A, Bengtsson-Palme J

- - (-) 57-81 [2025-00-00; online 2025-00-00]

Limited Effects of Tetracycline and Ciprofloxacin on Soil Bacterial Communities

Wenne M, Abramova A, Bengtsson-Palme J

- - (-) - [2025-00-00; online 2025-00-00]