SciLifeLab Affiliated and Fellows Publications

Publications by year

The 20 most recent publications

Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.

Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C

Life Sci. Alliance 7 (2) - [2024-02-00; online 2023-11-20]

Claudia Kutter SciLifeLab Fellow

DOI Crossref

Bayesian polynomial neural networks and polynomial neural ordinary differential equations

Fronk C, Yun J, Singh P, Petzold L

arxiv preprint - (-) - [2023-12-01; online 2023-08-25]

Prashant Singh SciLifeLab Fellow

Adaptive Parameter-Free Robust Learning using Latent Bernoulli Variables

Karakulev A, Zachariah D, Singh P

arxiv preprint - (-) - [2023-12-01; online 2023-12-04]

Prashant Singh SciLifeLab Fellow

PubMed DOI Crossref

Gasdermin D is the only Gasdermin that provides protection against acute Salmonella gut infection in mice.

Fattinger SA, Maurer L, Geiser P, ..., Sellin ME, Hardt WD

Proc. Natl. Acad. Sci. U.S.A. 120 (48) e2315503120 [2023-11-28; online 2023-11-21]

Mikael Sellin SciLifeLab Fellow

PubMed DOI Crossref

Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.

Meineke B, Heimgärtner J, Caridha R, ..., Landreh M, Elsässer SJ

Cell Rep Methods 3 (11) 100626 [2023-11-20; online 2023-11-06]

SciLifeLab Fellow Simon Elsässer

PubMed DOI Crossref

CCR5 promoter region polymorphisms in systemic lupus erythematosus.

Schauren JDS, de Oliveira AH, Consiglio CR, ..., Ellwanger JH, Chies JAB

Int J Immunogenet - (-) - [2023-11-20; online 2023-11-20]

Camila Consiglio DDLS Fellow

PubMed DOI Crossref

The association of the RSC remodeler complex with chromatin is influenced by the prefoldin-like Bud27 and determines nucleosome positioning and polyadenylation sites usage in Saccharomyces cerevisiae.

Cuevas-Bermúdez A, Martínez-Fernández V, Garrido-Godino AI, ..., Pelechano V, Francisco N

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms - (-) 194995 [2023-11-13; online 2023-11-13]

SciLifeLab Fellow Vicent Pelechano

PubMed DOI Crossref

Non-invasive imaging of sympathetic innervation of the pancreas in individuals with type 2 diabetes.

Vyakaranam AR, Mahamed MM, Hellman P, ..., Christoffersson G, Sundin A

Diabetologia - (-) - [2023-11-07; online 2023-11-07]

Gustaf Christoffersson SciLifeLab Fellow

PubMed DOI Crossref

NIPMAP: niche-phenotype mapping of multiplex histology data by community ecology.

El Marrahi A, Lipreri F, Kang Z, ..., Alber D, Hausser J

Nat Commun 14 (1) 7182 [2023-11-07; online 2023-11-07]

Jean Hausser SciLifeLab Fellow

PubMed DOI Crossref

SRCAP mutations drive clonal hematopoiesis through epigenetic and DNA repair dysregulation.

Chen CW, Zhang L, Dutta R, ..., Sperling AS, Goodell MA

Cell Stem Cell 30 (11) 1503-1519.e8 [2023-11-02; online 2023-10-19]

Abhishek Niroula DDLS Fellow

PubMed DOI Crossref

Functional and molecular profiling of hematopoietic stem cells during regeneration.

Rydström A, Grahn THM, Niroula A, ..., Larsson J, Karlsson S

Exp. Hematol. 127 (-) 40-51 [2023-11-00; online 2023-09-04]

Abhishek Niroula DDLS Fellow

PubMed DOI Crossref

Three-dimensional Co-culture Model for Live Imaging of Pancreatic Islets, Immune Cells, and Neurons in Agarose Gel.

Muntjewerff EM, Josyula VS, Christoffersson G

Bio Protoc 13 (20) e4852 [2023-10-20; online 2023-10-20]

Gustaf Christoffersson SciLifeLab Fellow

PubMed DOI Crossref

PACMan: A software package for automated single-cell chlorophyll fluorometry.

Pontén O, Xiao L, Kutter J, ..., Wählby C, Behrendt L

Cytometry A - (-) - [2023-10-20; online 2023-10-20]

Lars Behrendt SciLifeLab Fellow

PubMed DOI Crossref

Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.

Cameron DP, Grosser J, Ladigan S, ..., Hahn SA, Baranello L

Sci Adv 9 (41) eadg5109 [2023-10-13; online 2023-10-13]

Claudia Kutter SciLifeLab Fellow

PubMed DOI Crossref

Discovery and characterisation of quinazolines and 8-Azaquinazolines as NLRP3 agonists with oral bioavailability in mice.

O' Donovan DH, Baker D, Ciotta G, ..., Tang H, Valge-Archer V

Bioorg. Med. Chem. Lett. 96 (-) 129518 [2023-10-12; online 2023-10-12]

SciLifeLab Fellow Yumeng Mao

PubMed DOI Crossref

Functional imaging studies of acute administration of classic psychedelics, ketamine, and MDMA: Methodological limitations and convergent results.

Linguiti S, Vogel JW, Sydnor VJ, ..., Dworkin RH, Satterthwaite TD

Neurosci Biobehav Rev 154 (-) 105421 [2023-10-05; online 2023-10-05]

DDLS Fellow Jacob W Vogel

PubMed DOI Crossref

Long-Term Effects of Perinatal Exposure to a Glyphosate-Based Herbicide on Melatonin Levels and Oxidative Brain Damage in Adult Male Rats.

Cattani D, Pierozan P, Zamoner A, Brittebo E, Karlsson O

Antioxidants (Basel) 12 (10) - [2023-10-03; online 2023-10-03]

Oskar Karlsson SciLifeLab Fellow

PubMed DOI Crossref

Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk.

Yu Z, Fidler TP, Ruan Y, ..., Tall AR, Natarajan P

J. Clin. Invest. 133 (18) - [2023-09-15; online 2023-09-15]

Abhishek Niroula DDLS Fellow

DOI Crossref

Estrogen receptor activation remodelsTEAD1gene expression to alleviate nonalcoholic fatty liver disease

Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C

- - (-) - [2023-09-08; online 2023-09-08]

Claudia Kutter SciLifeLab Fellow

PubMed DOI Crossref

Digital assay for rapid electronic quantification of clinical pathogens using DNA nanoballs.

Tayyab M, Barrett D, van Riel G, ..., Javanmard M, Pelechano V

Sci Adv 9 (36) eadi4997 [2023-09-08; online 2023-09-06]

SciLifeLab Fellow Vicent Pelechano