SciLifeLab Affiliated and Fellows Publications

Comparative analysis of end-to-end learning and foundation models for clinical-grade prostate pathology

Mulliqi N, Blilie A, Ji X, ..., Eklund M, Kartasalo K

Nat Commun - (-) - [2026-10-26; online 2026-10-26]

Multimodal AI refines EAU risk stratification in patients undergoing radiotherapy for prostate cancer

Camilloni A, Micoli C, Falagario UG, ..., Nordström T, Eklund M

Sci Rep 16 (1) - [2026-10-17; online 2026-10-17]

FGFR pathway inhibition enhances PD-1 blockade and modulates antitumor immunity in colorectal cancer models.

Shang Z, Jing C, Liu J, ..., Mao Y, Chen Y

BMC Cancer 26 (1) - [2026-10-13; online 2026-10-13]

SciLifeLab Fellow Yumeng Mao

Validation of diagnostic artificial intelligence models for prostate pathology in a Middle Eastern cohort.

Muhammad Ali PJ, Vincent N, Abdulla SS, ..., Al-Talabani AK, Kartasalo K

Virchows Arch. - (-) - [2026-10-10; online 2026-10-10]

The porin MspA is a phage-specific determinant of mycobacteriophage infection

Kim D, Maziero M, Eckartt KA, ..., Rock JM, Fossati A

- - (-) - [2026-10-10; online 2026-10-10]

Andrea Fossati DDLS Fellow

Conserved mycobacteriophage protein uses structural mimicry to displace host initiation factors

Parker DR, Ghosh S, Dujiskova A, ..., Campbell E, Fossati A

- - (-) - [2026-10-05; online 2026-10-05]

Andrea Fossati DDLS Fellow

A novel mechanism for morphological change during bacterial sporulation based on programmed peptidoglycan degradation

Carbó CAR, Irazoki O, Venkatesan S, ..., Cava F, Nan B

- - (-) - [2026-10-02; online 2026-10-02]

Association between CYP2D6 and CYP2C19 genotypes and venlafaxine treatment failure: a retrospective study on two cohorts from Norway and the UK

Park Y, Lenk HÇ, Zhou Y, Lauschke VM, Molden E

The Lancet Psychiatry 13 (10) 852-860 [2026-10-00; online 2026-10-00]

DDLS Fellow Yitian Zhou

Lichen research in the omics era: a lens into the archetypal symbiosis

Cameron ES, Tagirdzhanova G

The Lichenologist - (-) 1-14 [2026-09-25; online 2026-09-25]

Gulnara Tagirdzhanova SciLifeLab Fellow

A novel multiomics machine learning signature identifies rapid progression in clinically low risk prostate cancer

Rafeletou A, Fathi F, Kiseļova T, Taheri G, Lundberg A

NPJ Digit Med 9 (1) - [2026-09-14; online 2026-09-14] Open Access

Arian Lundberg DDLS Fellow

Tangerine: A new family of Starships from lichen-forming fungi.

Tagirdzhanova G, Brown NE, Bucknell AH, ..., Gluck-Thaler E, Talbot NJ

Proc. Natl. Acad. Sci. U.S.A. 123 (33) e2534402123 [2026-08-18; online 2026-08-11]

Gulnara Tagirdzhanova SciLifeLab Fellow

The Network of National COVID-19 Data Portals: public health equity through collaboration.

Ventouratou M, Hughes L, Öjefors Stark K, ..., Cummins C, Cochrane G

Open Res Eur 5 (-) 192 [2026-08-10; online 2026-08-10]

Grey matter structural asymmetry and premenstrual dysphoric disorder

Bücklein-Ehlers E, Dubol M, Derntl B, ..., Fallgatter A, Comasco E

Neuropsychobiology - (-) 1-22 [2026-08-06; online 2026-08-06]

Erika Comasco SciLifeLab Fellow

Biologically informed neural network models are robust to spurious interactions via self-pruning.

Nordenstorm O, Baghdassarian H, Xu X, Lauffenburger DA, Nilsson A

Bioinformatics 42 (8) - [2026-08-03; online 2026-07-26]

Avlant Nilsson DDLS Fellow

Escitalopram and brain reactivity to aggressive stimuli in premenstrual dysphoric disorder.

Dubol M, Gröndal M, Schmidt F, ..., Sundstrøm I, Comasco E

Br J Psychiatry - (-) 1-9 [2026-07-28; online 2026-07-28]

Erika Comasco SciLifeLab Fellow

The PAR dataset: Prostate biopsy whole slide images from an underrepresented Middle Eastern population.

Muhammad Ali PJ, Vincent N, Abdulla SS, ..., Al-Talabani AK, Mulliqi N

Sci Data 13 (1) - [2026-07-16; online 2026-07-16]

AllTheBacteria: a community resource empowers biology and discovers novel peptide antibiotics.

Hunt M, Torres MDT, Alikhan NF, ..., Lees JA, Iqbal Z

bioRxiv - (-) - [2026-07-07; online 2026-07-07]

DDLS Fellow Laura Carroll

Toward a unified approach: Considerations for bioinformatic and sequencing activities & data in wastewater surveillance of biologic public health threats.

Psomopoulos F, O'Cathail C, Anastasiadou N, ..., Wright M, ELIXIR Wastewater Surveillance Working Group

Open Res Eur 5 (-) 267 [2026-07-06; online 2026-07-06]

Lipid packing contributes to the confinement of caveolae to the plasma membrane.

Larsson E, Kabedev A, Pace H, ..., Bally M, Lundmark R

Elife 14 (-) - [2026-07-06; online 2026-07-06]