SciLifeLab Affiliated and Fellows Publications

PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity

Larralde M, Zeller G, Carroll LM

- - (-) - [2025-02-17; online 2025-02-17]

DDLS Fellow Laura Carroll

The business case for investing in biodiversity data

Hasan F, Nyström J, Andersson C, ..., Johansson V, Andermann T

- - (-) - [2025-02-04; online 2025-02-04]

Telomemore enables single-cell analysis of cell cycle and chromatin condensation.

Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J

Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]

DDLS Fellow Laura Carroll

The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape

Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T

- - (-) - [2025-00-00; online 2025-00-00]

Strategies for taxonomic and functional annotation of metagenomes

Abramova A, Bengtsson-Palme J

- - (-) 57-81 [2025-00-00; online 2025-00-00]

DDLS Fellow Johan Bengtsson-Palme

Plasma proteomics for novel biomarker discovery in childhood tuberculosis

Fossati A, Wambi P, Jaganath D, ..., Zar HJ, Swaney DL

- - (-) - [2024-12-08; online 2024-12-08]

Andrea Fossati

Microneedles loaded with lipid nanocarriers for local treatment of vulvovaginal candidiasis

Udayakumar P, Škalko-Basnet N, Salas Cotaquispe CF, ..., Du J, Teleki A

- - (-) - [2024-11-25; online 2024-11-25]

Alexandra Teleki SciLifeLab Fellow

The early transcriptional and post-transcriptional responses to fluconazole in sensitive and resistant Candida albicans.

Stevens I, Silao FG, Huch S, ..., Ljungdahl PO, Pelechano V

Sci Rep 14 (1) 29012 [2024-11-22; online 2024-11-22]

SciLifeLab Fellow Vicent Pelechano

Flipping a switch on BRD4: How to control the do-it-all.

van Hout FAH, Vihervaara A

Mol. Cell 84 (22) 4257-4259 [2024-11-21; online 2024-11-23]

Anniina Vihervaara SciLifeLab Fellow

Single-molecule states link transcription factor binding to gene expression.

Doughty BR, Hinks MM, Schaepe JM, ..., Bintu L, Greenleaf WJ

Nature - (-) - [2024-11-20; online 2024-11-20]

Emil Marklund SciLifeLab Fellow

Complete genome sequences of the prosthecate dimorphic bacteria Brevundimonas intermedia CB63T and Brevundimonas staleyi FWC43T.

Hallgren J, Daneby F, Jonas K

Microbiol Resour Announc - (-) e0105024 [2024-11-20; online 2024-11-20]

Kristina Jonas SciLifeLab Fellow

A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data

Ridley R, Persson C, Oxelman B, Andermann T, Bacon CD

Systematic Botany 49 (3) 617-625 [2024-11-19; online 2024-11-19]

Annotated genome sequences of Salmonella Haifa, Salmonella Bangkok, and Salmonella Reading, isolated from chicken meat in South Africa.

Mathole M, Carroll L, Khabo-Mmekoa C, Mabogoane N, Matle I

Microbiol Resour Announc 13 (11) e0028424 [2024-11-12; online 2024-10-09]

DDLS Fellow Laura Carroll

Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females.

Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E

Front Neuroendocrinol - (-) 101160 [2024-11-06; online 2024-11-06]

Erika Comasco SciLifeLab Fellow

Integration across biophysical scales identifies molecular and cellular correlates of person-to-person variability in human brain connectivity.

Ng B, Tasaki S, Greathouse KM, ..., Gaiteri C, Herskowitz JH

Nat. Neurosci. 27 (11) 2240-2252 [2024-11-00; online 2024-10-31]

DDLS Fellow Jacob W Vogel

White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study.

Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E

Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 [2024-10-23; online 2024-10-23]

Erika Comasco SciLifeLab Fellow

Fish are poor sentinels for surveillance of riverine AMR

Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U

- - (-) - [2024-10-22; online 2024-10-22]

DDLS Fellow Johan Bengtsson-Palme

Resilience of genetic diversity in forest trees over the Quaternary.

Milesi P, Kastally C, Dauphin B, ..., Pyhäjärvi T, GenTree Consortium

Nat Commun 15 (1) 8538 [2024-10-14; online 2024-10-14]

Pascal Milesi SciLifeLab Fellow

Metagenomic assemblies tend to break around antibiotic resistance genes.

Abramova A, Karkman A, Bengtsson-Palme J

BMC Genomics 25 (1) 959 [2024-10-14; online 2024-10-14]

DDLS Fellow Johan Bengtsson-Palme

Properties and limitations of eDNA substrates for terrestrial animal monitoring

Zhao B, Andermann T

- - (-) - [2024-10-10; online 2024-10-10]