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SciLifeLab Affiliated and Fellows Publications

The publications in this database are authored by SciLifeLab Fellows, DDLS Fellows and other researchers affiliated with SciLifeLab.

Publications resulting from research assisted by the infrastructure units of SciLifeLab are available in a separate database at https://publications.scilifelab.se/.

Publications by year

The 20 most recent publications

PubMed DOI Crossref

Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.

Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C

Life Sci. Alliance 7 (2) - [2024-02-00; online 2023-11-20]

Claudia Kutter SciLifeLab Fellow

Adaptive Parameter-Free Robust Learning using Latent Bernoulli Variables

Karakulev A, Zachariah D, Singh P

arxiv preprint - (-) - [2023-12-01; online 2023-12-04]

Prashant Singh SciLifeLab Fellow

PubMed DOI Crossref

Nutritional control of bacterial DNA replication.

Hallgren J, Jonas K

Curr Opin Microbiol 77 (-) 102403 [2023-11-29; online 2023-11-29]

Kristina Jonas SciLifeLab Fellow

PubMed DOI Crossref

Gasdermin D is the only Gasdermin that provides protection against acute Salmonella gut infection in mice.

Fattinger SA, Maurer L, Geiser P, ..., Sellin ME, Hardt WD

Proc. Natl. Acad. Sci. U.S.A. 120 (48) e2315503120 [2023-11-28; online 2023-11-21]

Mikael Sellin SciLifeLab Fellow

PubMed DOI Crossref

Phosphate starvation decouples cell differentiation from DNA replication control in the dimorphic bacterium Caulobacter crescentus.

Hallgren J, Koonce K, Felletti M, ..., Turco E, Jonas K

PLoS Genet 19 (11) e1010882 [2023-11-27; online 2023-11-27]

Kristina Jonas SciLifeLab Fellow

PubMed DOI Crossref

The heat shock protein LarA activates the Lon protease in response to proteotoxic stress.

Omnus DJ, Fink MJ, Kallazhi A, ..., Landreh M, Jonas K

Nat Commun 14 (1) 7636 [2023-11-22; online 2023-11-22]

Kristina Jonas SciLifeLab Fellow

A conserved ribosomal protein has entirely dissimilar structures in different organisms

Schierholz L, Brown CR, Helena-Bueno K, ..., Barandun J, Melnikov SV

Molecular Biology and Evolution - (-) - [2023-11-21; online 2023-11-21]

Jonas Barandun SciLifeLab Fellow

PubMed DOI Crossref

Spatial host-microbiome sequencing reveals niches in the mouse gut.

Lötstedt B, Stražar M, Xavier R, Regev A, Vickovic S

Nat. Biotechnol. - (-) - [2023-11-20; online 2023-11-20]

Sanja Vickovic SciLifeLab Fellow

PubMed DOI Crossref

Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.

Meineke B, Heimgärtner J, Caridha R, ..., Landreh M, Elsässer SJ

Cell Rep Methods 3 (11) 100626 [2023-11-20; online 2023-11-06]

SciLifeLab Fellow Simon Elsässer

PubMed DOI Crossref

CCR5 promoter region polymorphisms in systemic lupus erythematosus.

Schauren JDS, de Oliveira AH, Consiglio CR, ..., Ellwanger JH, Chies JAB

Int J Immunogenet - (-) - [2023-11-20; online 2023-11-20]

Camila Consiglio DDLS Fellow

PubMed DOI Crossref

Multi-omics network analysis on samples from sequential biopsies reveals vital role of proliferation arrest for Macrosteatosis related graft failure in rats after liver transplantation.

Liu Z, Wang W, Li X, ..., Mardinoglu A, Zheng S

Genomics 115 (6) 110748 [2023-11-19; online 2023-11-19]

Adil Mardinoglu SciLifeLab Fellow

Genomic analyses elucidate the causes and consequences of breakdown of distyly inLinum trigynum

Gutiérrez-Valencia J, Zervakis PI, Postel Z, ..., Arroyo J, Slotte T

- - (-) - [2023-11-17; online 2023-11-17]

SciLifeLab Fellow Tanja Slotte

PubMed DOI Crossref

The association of the RSC remodeler complex with chromatin is influenced by the prefoldin-like Bud27 and determines nucleosome positioning and polyadenylation sites usage in Saccharomyces cerevisiae.

Cuevas-Bermúdez A, Martínez-Fernández V, Garrido-Godino AI, ..., Pelechano V, Francisco N

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms - (-) 194995 [2023-11-13; online 2023-11-13]

SciLifeLab Fellow Vicent Pelechano

Core genes driving climate adaptation in plants

Yeaman S, Whiting J, Booker T, ..., Wright S, Zhou L

- - (-) - [2023-11-10; online 2023-11-10]

Pascal Milesi SciLifeLab Fellow

PubMed DOI Crossref

Anticancer Potential of Novel Cinnamoyl Derivatives against U87MG and SHSY-5Y Cell Lines.

Gouleni N, Di Rienzo A, Oner S, ..., Vassiliou S, Cacciatore I

Anticancer Agents Med Chem - (-) - [2023-11-10; online 2023-11-10]

Adil Mardinoglu SciLifeLab Fellow

PubMed DOI Crossref

Non-invasive imaging of sympathetic innervation of the pancreas in individuals with type 2 diabetes.

Vyakaranam AR, Mahamed MM, Hellman P, ..., Christoffersson G, Sundin A

Diabetologia - (-) - [2023-11-07; online 2023-11-07]

Daniel Espes Gustaf Christoffersson SciLifeLab Fellow

PubMed DOI Crossref

NIPMAP: niche-phenotype mapping of multiplex histology data by community ecology.

El Marrahi A, Lipreri F, Kang Z, ..., Alber D, Hausser J

Nat Commun 14 (1) 7182 [2023-11-07; online 2023-11-07]

Jean Hausser SciLifeLab Fellow

PubMed DOI Crossref

Regulation of the general stress response sigma factor σT by Lon-mediated proteolysis.

Akar R, Fink MJ, Omnus DJ, Jonas K

J. Bacteriol. 205 (11) e0022823 [2023-11-06; online 2023-11-06]

Kristina Jonas SciLifeLab Fellow

PubMed DOI Crossref

PRO-IP-seq tracks molecular modifications of engaged Pol II complexes at nucleotide resolution.

Vihervaara A, Versluis P, Himanen SV, Lis JT

Nat Commun 14 (1) 7039 [2023-11-03; online 2023-11-03]

Anniina Vihervaara SciLifeLab Fellow

PubMed DOI Crossref

Open MoA: revealing the mechanism of action (MoA) based on network topology and hierarchy.

Liao X, Ozcan M, Shi M, ..., Mardinoglu A, Zhang C

Bioinformatics 39 (11) - [2023-11-01; online 2023-11-06]

Adil Mardinoglu SciLifeLab Fellow

SciLifeLab Data Centre

Publications 9.5.0