Publications 2025

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25 publications

PubMed DOI Crossref
Fish are poor sentinels for surveillance of riverine antimicrobial resistance.
Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U
One Health 20 (-) 101026 [2025-06-00; online 2025-04-01]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Environmental reservoir of resistance genes for the last resort antibiotic Cefiderocol
Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppe E
- - (-) - [2025-05-26; online 2025-05-26]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Gender differences in global antimicrobial resistance.
Salehi M, Laitinen V, Bhanushali S, ..., Pärnänen K, Lahti L
NPJ Biofilms Microbiomes 11 (1) 79 [2025-05-19; online 2025-05-19]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Community-promoted antibiotic resistance genes show increased dissemination among pathogens
Lund D, Johnning A, Holmström M, ..., Bengtsson-Palme J, Kristiansson E
- - (-) - [2025-05-15; online 2025-05-15]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Occurrence and spread of carbapenemase‐producing Enterobacterales (CPE) in the food chain in the EU/EFTA. Part 1: 2025 update
Allende A, Álvarez‐Ordóñez A, Bortolaia V, ..., Rabbås H, Peixe L
EFSA J 23 (4) - [2025-04-00; online 2025-04-00]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Seal milk oligosaccharides rival human milk complexity and exhibit functional dynamics during lactation
Jin C, Lundstrøm J, Cori CR, ..., Khoo KH, Bojar D
- - (-) - [2025-03-20; online 2025-03-20]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Early gonadotoxic effects of cyclophosphamide on the prepubertal testis and the feasibility of reducing toxicity through combined antioxidant therapy
Eskafinoghani A, Reyes Palomares A, Hao X, ..., Lundberg A, Rodriguez-Walberg KA
- - (-) - [2025-03-19; online 2025-03-19]
Arian Lundberg DDLS Fellow
PubMed DOI Crossref
Androgen Receptor Inhibition Increases MHC Class I Expression and Improves Immune Response in Prostate Cancer.
Chesner LN, Polesso F, Graff JN, ..., Feng FY, Moran AE
Cancer Discovery 15 (3) 481-494 [2025-03-03; online 2024-12-09]
Arian Lundberg DDLS Fellow
PubMed DOI Crossref
Recent advances in precision nutrition and cardiometabolic diseases.
Martínez-González MA, Planes FJ, Ruiz-Canela M, ..., Razquin C, Hu FB
Rev Esp Cardiol (Engl Ed) 78 (3) 263-271 [2025-03-00; online 2024-09-30]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Applying 3D cultures and high-throughput technologies to study host-pathogen interactions.
De Martinis ECP, Alves VF, Pereira MG, ..., Dannborg M, Bengtsson-Palme J
Front Immunol 16 (-) 1488699 [2025-02-20; online 2025-02-20]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Genetic adaptation to amoxicillin in Escherichia coli: The limited role of dinB and katE.
Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B
PLoS ONE 20 (2) e0312223 [2025-02-19; online 2025-02-19]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
Larralde M, Zeller G, Carroll LM
- - (-) - [2025-02-17; online 2025-02-17]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Towards an interpretable deep learning model of cancer.
Nilsson A, Meimetis N, Lauffenburger DA
NPJ Precis Oncol 9 (1) 46 [2025-02-14; online 2025-02-14]
Avlant Nilsson DDLS Fellow
DOI Crossref
The business case for investing in biodiversity data
Hasan F, Nyström J, Andersson C, ..., Johansson V, Andermann T
- - (-) - [2025-02-04; online 2025-02-04]
DDLS Fellow Tobias Andermann
PubMed DOI Crossref
Ceftazidime-avibactam tolerance and persistence among difficult-to-treat KPC-producing Klebsiella pneumoniae clinical isolates from bloodstream infections.
Abichabki N, Gaspar GG, Bortolato LR, ..., Darini ALC, Andrade LN
Eur. J. Clin. Microbiol. Infect. Dis. 44 (2) 343-353 [2025-02-00; online 2024-11-30]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Adaptation of Escherichia coli to ciprofloxacin and enrofloxacin: Differential proteomics of the SOS response and RecA-independent mechanisms.
Teichmann L, Pasman R, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B
Int. J. Antimicrob. Agents 65 (2) 107420 [2025-02-00; online 2024-12-30]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Telomemore enables single-cell analysis of cell cycle and chromatin condensation.
Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J
Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Fluoroquinolone-specific resistance trajectories in E. coli and their dependence on the SOS-response.
Teichmann L, Luitwieler S, Bengtsson-Palme J, Ter Kuile B
BMC Microbiol. 25 (1) 37 [2025-01-21; online 2025-01-21]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.
Meimetis N, Lauffenburger DA, Nilsson A
STAR Protoc 6 (1) 103573 [2025-01-16; online 2025-01-16]
Avlant Nilsson DDLS Fellow
DOI Crossref
DTPPI: predicting drug interactions using a weighted drug-protein network
Szydlik S, Taheri G
- - (-) - [2025-01-08; online 2025-01-08]
DDLS Fellow Golnaz Taheri
DOI Crossref
Unveiling Driver Modules in Lung Cancer: A Clustering-Based Gene-Gene Interaction Network Analysis
Taheri G, Szalai M, Habibi M, Papapetrou P
- - (-) 41-58 [2025-00-00; online 2025-01-01]
DDLS Fellow Golnaz Taheri
DOI Crossref
The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape
Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T
- - (-) - [2025-00-00; online 2025-00-00]
DDLS Fellow Tobias Andermann
DOI Crossref
Strategies for taxonomic and functional annotation of metagenomes
Abramova A, Bengtsson-Palme J
- - (-) 57-81 [2025-00-00; online 2025-00-00]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Menstrual cycle-related changes in the human brain
Pletzer B, Comasco E, Hidalgo-Lopez E, ..., Sundström-Poromaa I, Derntl B
- - (-) 604-623 [2025-00-00; online 2024-02-12]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Limited Effects of Tetracycline and Ciprofloxacin on Soil Bacterial Communities
Wenne M, Abramova A, Bengtsson-Palme J
- - (-) - [2025-00-00; online 2025-00-00]
DDLS Fellow Johan Bengtsson-Palme
SciLifeLab Data Centre
Publications 9.5.1