Publications 2025

The collision of two genomes threatens global food security

North HL, Montejo-Kovacevich G, Amado D, ..., Omoto C, Jiggins CD

- - (-) - [2025-12-25; online 2025-12-25]

Gabriela Montejo-Kovacevich SciLifeLab Fellow

Retrospective validation of an artificial intelligence system for diagnostic assessment of prostate biopsies on the ProMort cohort: study protocol.

Ji X, Zelic R, Aspegren O, ..., Akre O, Kartasalo K

BMJ Open 15 (12) e111361 [2025-12-24; online 2025-12-24]

PubMed DOI Crossref

Maturation of human intestinal epithelial cell layers fortifies the apical surface against Salmonella attack.

van Rijn JM, Lopes ACC, Dienhart FSV, ..., Di Martino ML, Sellin ME

Cell Reports 44 (12) 116579 [2025-12-23; online 2025-11-21]

DOI Crossref

Data availability impacts the predictive accuracy of pressure-based biodiversity models

Nyström J, Smith JR, Mandle L, ..., Schön TB, Andermann T

- - (-) - [2025-12-23; online 2025-12-23]

PubMed DOI Crossref

The gut microbiome in early pregnancy is associated with the severity of nausea and vomiting: a nested case‒control study.

González-Valdivia C, Tong B, Hjalmarsson S, ..., Brusselaers N, Hugerth LW

Gut Microbes Rep 3 (1) 2603861 [2025-12-22; online 2025-12-22]

PubMed DOI Crossref

LIPA, a risk locus for coronary artery disease: decoding the variant-to-function relationship.

Li F, Flynn E, Ha P, ..., Lappalainen T, Zhang H

Eur. Heart J. 46 (48) 5273-5288 [2025-12-22; online 2025-08-19]

PubMed DOI Crossref

Protocol for image-based monitoring of de novo RNA synthesis at DNA double-strand breaks in human cell lines.

Pappas G, Gram HH, Bartek J, Galanos P

STAR Protoc 6 (4) 104157 [2025-12-19; online 2025-10-22]

PubMed DOI Crossref

Protocol for generation of endothelial cells from human-derived iPSCs and integration into mouse brain explants.

Erzar I, Noll N, Lugano R, ..., Arce M, Magnusson PU

STAR Protoc 6 (4) 104239 [2025-12-19; online 2025-12-05]

PubMed DOI Crossref

Insight into Malt1 activation mechanism through synergetic approach of AlphaFold, MD Simulation and NMR dynamic analyses.

Lesovoy D, Agback T, Roshchin K, ..., Orekhov V, Agback P

bioRxiv - (-) - [2025-12-19; online 2025-12-19]

PubMed DOI Crossref

Improved Identification of Large-effect Rare Genetic Variants using Haplotype Aggregated Allele-specific Expression Data.

Ganapathy KR, Broly M, Silverstein S, ..., Lappalainen T, Mohammadi P

medRxiv - (-) - [2025-12-18; online 2025-12-18]

PubMed DOI Crossref

Prenatal Exposure to Phthalates, Bisphenols and Their Mixtures and Early Childhood Allergic Conditions and Asthma: Results from the APrON Cohort.

Bartram E, England-Mason G, Martin JW, ..., Soomro MH, APrON Study Team

Int J Environ Res Public Health 22 (12) - [2025-12-17; online 2025-12-17]

DOI Crossref

The vaginal microbiota and gynaecological health study - VaMiGyn - description of a population-based Swedish cohort

Norenhag J, Edfeldt G, Stålberg K, ..., Engstrand L, Olovsson M

npj Womens Health 3 (1) - [2025-12-16; online 2025-12-16]

PubMed DOI Crossref

SARS-CoV-2 Spike Protein Amyloid Fibrils Impair Fibrin Formation and Fibrinolysis.

Westman H, Hammarström P, Nyström S

Biochemistry 64 (24) 4818-4829 [2025-12-16; online 2025-11-26]

PubMed DOI Crossref

Macrophages as central mediators of sympathetic neuro-immune interplay in autoimmunity.

Muntjewerff EM, Josyula VS, Lehmair F, Christoffersson G

Front Immunol 16 (-) 1654382 [2025-12-16; online 2025-12-16]

PubMed DOI Crossref

Minimal structural perturbation of Histatin 5 in crowded environments: Insights from small-angle X-ray scattering, dynamic light scattering, and computer simulations.

Fagerberg E, Holmqvist P, Lenton S, Pernot P, Skepö M

J Colloid Interface Sci 700 (Pt 1) 138310 [2025-12-15; online 2025-07-07]

PubMed DOI Crossref

PDGFRß targeted positron emission tomography as a non-invasive biomarker for activated hepatic stellate cells: lasts steps before clinical translation.

Yashaswini CN, Mitran B, Papadopoulos N, ..., Friedman SL, Eriksson O

EJNMMI Radiopharm Chem 10 (1) 80 [2025-12-13; online 2025-12-13]

PubMed DOI Crossref

Can we infer excitation-inhibition balance from the spectrum of population activity?

Chakravarty K, Roy S, Sinha A, Kumar A

Commun Biol 9 (1) 51 [2025-12-13; online 2025-12-13]

PubMed DOI Crossref

Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales.

Hallgren J, Dharamshi JE, Rodríguez-Gijón A, ..., Garcia SL, Jonas K

Nat Commun 16 (1) 11003 [2025-12-12; online 2025-12-12]

PubMed DOI Crossref

The Advanced Therapies model of Lund an integrated approach to accelerate access for many patients.

Helenius G, Jovinge S, Falk A

Mol Ther Methods Clin Dev 33 (4) 101637 [2025-12-11; online 2025-11-25]

PubMed DOI Crossref

Inter- and intra-individual differences in brain sex map to neuroendocrine profiles.

Bon GM, Kimmig AS, Comasco E, Derntl B, Kaufmann T

bioRxiv - (-) - [2025-12-11; online 2025-12-11]

PubMed DOI Crossref

Insulin-regulated aminopeptidase inhibitor C9 restores cellular activity in methadone-damaged primary cell cultures.

Stam F, Bjurling S, Nylander E, ..., Grönbladh A, Hallberg M

Neurosci. Lett. 869 (-) 138415 [2025-12-10; online 2025-10-10]

PubMed DOI Crossref

Integrating extensive functional annotations and multiomics of cattle enhances climate resilience prediction and mapping.

Xiang R, Breen E, Bolormaa S, ..., Chamberlain AJ, Goddard ME

Proc. Natl. Acad. Sci. U.S.A. 122 (49) e2514736122 [2025-12-09; online 2025-11-24]

PubMed DOI Crossref

Hair follicle gene expression profiling in the SubPopulations and InteRmediate Outcome Measures in COPD Study (SPIROMICS).

Buschur KL, Martorella M, Garcia-Flores R, ..., Barr RG, Lappalainen T

BMC Med Genomics 18 (1) 192 [2025-12-09; online 2025-12-09]

PubMed DOI Crossref

Discovery of Previously Unreported Per- and Polyfluoroalkyl Substances (PFAS) in Pooled Australian Human Serum Using Nontarget Analysis.

Dewapriya P, Nilsson S, Ghorbani Gorji S, ..., Kaserzon SL, Thomas KV

Environ. Sci. Technol. 59 (48) 26081-26091 [2025-12-09; online 2025-11-26]

DOI Crossref

A modular lentiviral system for multiplexed gene perturbation and functional analysis suggests interdependence of hormone receptors in breast cancer growth in vivo

Alam S, Matvienko D, Boström J, ..., Brisken C, Altun M

- - (-) - [2025-12-09; online 2025-12-09]

DOI Crossref

A Critical Review and Evaluation of Blood Microsampling Devices for Exposomics

Thiele S, Martin JW

Environ Sci Technol Lett 12 (12) 1595-1610 [2025-12-09; online 2025-11-07]

PubMed DOI Crossref

Evolvability: progress and key questions

Pélabon C, Agudelo-Cantero GA, Araya Ajoy YG, ..., Walling C, Wright J

Bioscience 75 (12) 1042-1057 [2025-12-08; online 2025-09-09]

DDLS Fellow Lisandro Milocco

PubMed DOI Crossref

Tissue-resident microbiota impacts colorectal cancer progression and prognosis.

Shi Z, Ren H, Lin C, ..., Sjöblom T, Zhong H

Nat Commun 17 (1) 346 [2025-12-07; online 2025-12-07]

PubMed DOI Crossref

Predicting allergy and postpartum depression from an incomplete compositional microbiome.

Shternshis A, Tong B, Skalkidou A, ..., Hugerth LW, Singh P

BMC Genomics 26 (1) 1092 [2025-12-06; online 2025-12-06]

DOI Crossref

Safe-and-sustainable-by-design approach to polyesters from non-oestrogenic bisphenols

Margarita C, Pierozan P, Subramaniyan S, ..., Karlsson O, Lundberg H

Nat Sustain 9 (1) 86-95 [2025-12-04; online 2025-12-04]

PubMed DOI Crossref

Evaluation of CD44v6-targeted radionuclide therapy on bone marrow, skin and esophageal epithelium using a novel internal dosimetry model.

Hemmingsson J, Nestor M, Mortensen AL, Frejd FY, Bernhardt P

Phys Med Biol 70 (23) - [2025-12-04; online 2025-12-04]

PubMed DOI Crossref

Microbial model communities exhibit widespread metabolic interdependencies.

Pacheco-Valenciana A, Tausch A, Veseli I, ..., Andersson AF, Garcia SL

Commun Biol 8 (1) 1752 [2025-12-03; online 2025-12-03]

PubMed DOI Crossref

Trait- versus state- grey matter volume alterations in premenstrual dysphoric disorder.

Stiernman L, Dubol M, Sundström-Poromaa I, Bixo M, Comasco E

BMC Psychiatry 25 (1) 1139 [2025-12-02; online 2025-12-02]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

Growth hormone regulates the stem cell population in the growth plate.

Chu NTL, Zhou B, Heinonen JO, ..., Ohlsson C, Chagin AS

Proc. Natl. Acad. Sci. U.S.A. 122 (48) e2512316122 [2025-12-02; online 2025-11-25]

DOI Crossref

Engineered Fab glycosylation of a blood-brain barrier transporter single-chain variable fragment preserved functionality but did not impact anti-drug antibody formation

Hederoth G, Liu J, Godec A, ..., Rethi B, Hultqvist G

- - (-) - [2025-12-02; online 2025-12-02]

PubMed DOI Crossref

Characterization of five environmental phages infecting Escherichia coli K-12 isolated during a phage biology training course.

Shyrokova L, Egorov AA, Cole A, ..., Hauryliuk V, Johansson MJO

Microbiol Spectr 13 (12) e0227425 [2025-12-02; online 2025-11-06]

DOI Crossref

Tissue architecture and immune niches govern ctDNA release in colorectal cancer

Kühberger S, Sallinger K, Müller CT, ..., El-Heliebi A, Heitzer E

- - (-) - [2025-12-01; online 2025-12-01]

PubMed DOI Crossref

Hormonal Contraceptive Formulations and Breast Cancer Risk in Adolescents and Premenopausal Women.

Hadizadeh F, Koteci A, Karlsson T, Ek WE, Johansson Å

JAMA Oncol 11 (12) 1497-1506 [2025-12-01; online 2025-10-30]

PubMed DOI Crossref

Ga-68-Labeled Affibody Molecule-Based Radiopharmaceutical Targeting Platelet Derived Growth Factor Receptor Beta for Detection of Active Fibrosis in Patients with Myocardial Infarction.

Velikyan I, Grinnemo KH, Flodin V, ..., Korsgren O, Eriksson O

Pharmaceuticals (Basel, Switzerland) 18 (12) - [2025-12-01; online 2025-12-01]

PubMed DOI Crossref

Breast cancer risk during oral contraceptive use in women with high polygenic risk.

Chatsatourian C, Lo Faro V, Karlsson T, Hadizadeh F, Johansson Å

Breast Cancer Res. 27 (1) 215 [2025-12-01; online 2025-12-01]

PubMed DOI Crossref

All-optical strategies to minimize photobleaching in reversibly switchable fluorescent proteins.

Marín-Aguilera G, Pennacchietti F, Volpato A, ..., Widengren J, Testa I

Nat Commun 16 (1) 10843 [2025-12-01; online 2025-12-01]

PubMed DOI Crossref

The effects of insulin-regulated aminopeptidase inhibition with HA08 on recognition memory acquisition and spatial working memory under reversed circadian conditions in male rats.

Stam F, Bjurling S, Zelleroth S, ..., Hallberg M, Grönbladh A

IBRO Neurosci Rep 19 (-) 854-861 [2025-12-00; online 2025-11-02]

PubMed DOI Crossref

Reprogramming Stars #25: Modeling Brain Aging with Direct Reprogramming of Skin Cells into Neurons-An Interview with Dr. Jerome Mertens.

Mertens J, Lopes M, Pereira CF

Cell Reprogram 27 (6) 207-212 [2025-12-00; online 2025-11-17]

PubMed DOI Crossref

Quest for Orthologs in the era of Data Deluge and AI: Challenges and Innovations in Orthology Prediction and Data Integration.

Majidian S, Hadziahmetovic A, Langschied F, ..., Ouangraoua A, Julca I

J. Mol. Evol. 93 (6) 702-719 [2025-12-00; online 2025-10-14]

PubMed DOI Crossref

Positron emission tomography to assess drug occupancy at peripheral and central incretin receptors.

Khalil A, Velikyan I, Xiong M, ..., Wagner M, Eriksson O

EBioMedicine 122 (-) 106033 [2025-12-00; online 2025-11-21]

PubMed DOI Crossref

Pangenomes as a framework for adaptive radiation, speciation, and adaptation.

Tellini N, Tørresen OK, Edwards D, ..., Jakobsen KS, Cerca J

American journal of botany 112 (12) e70130 [2025-12-00; online 2025-12-04]

PubMed DOI Crossref

PRIAMOS: A technique for mixing embedding media for freely adjusting pH value and refractive index (RI) for optical clearing (OC) of whole tissue samples.

Leischner U, Reifarth M, Brill MS, ..., Schubert US, Heintzmann R

J Microsc 300 (3) 302-314 [2025-12-00; online 2025-08-08]

DOI Crossref

Molecular classification of microsatellite-instable colorectal cancers reveals distinct predictors of immunotherapy response

Lin C, Luo T, Wu M, ..., Wu K, Sjöblom T

ESMO Gastrointestinal Oncology 10 (-) 100268 [2025-12-00; online 2025-12-00]

PubMed DOI Crossref

Improving accuracy in genome-wide association studies: a two-step approach for handling below limit of detection biomarker measurements.

Deng YA, Karlsson T, Johansson Å

NAR Genomics and Bioinformatics 7 (4) lqaf201 [2025-12-00; online 2025-12-31]

PubMed DOI Crossref

From slices to deep dishes: spatial transcriptomics and translatomics of thick tissue blocks.

Pleška M, Vickovic S

Nat. Methods 22 (12) 2500-2502 [2025-12-00; online 2025-11-25]

DOI Crossref

Estimating national Red List statuses for fungi in Sweden - An improved deep learning approach to account for unbalanced data

de Almeida FG, Baggström A, Andermann T

Ecological Informatics 92 (-) 103476 [2025-12-00; online 2025-12-00]

PubMed DOI Crossref

Diversity and evolution of alphaproteobacterial dimorphism.

Hallgren J, Jonas K

Curr Opin Microbiol 88 (-) 102661 [2025-12-00; online 2025-09-09]

PubMed DOI Crossref

Clinical and transcriptomic characterization of patients with chronic lymphocytic leukemia harboring t(14;19): an ERIC study.

Visentin A, Gaffo E, Fürstenau M, ..., Trentin L, Bortoluzzi S

Leukemia 39 (12) 2957-2967 [2025-12-00; online 2025-09-19]

PubMed DOI Crossref

Clinical Validation of Novel Immunoassays for Plasma Phosphorylated Tau 217, 212, 181, 231, and Brain-Derived Tau Across the Biochemical Spectrum of Alzheimer's Disease.

Dulewicz M, Kac PR, Ortiz FG, ..., Blennow K, Lewczuk P

J. Neurochem. 169 (12) e70313 [2025-12-00; online 2025-12-01]

PubMed DOI Crossref

Calcium stabilizes the flexible N-terminal domain of the bacterial ion channel DeCLIC.

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

J Struct Biol X 12 (-) 100139 [2025-12-00; online 2025-11-12]

PubMed DOI Crossref

Biodiversity Genomics Research Practices Require Harmonising to Meet Stakeholder Needs in Conservation.

Buzan E, de Guttry C, Bortoluzzi C, ..., Mazzoni CJ, Waterhouse RM

Mol. Ecol. 34 (23) e70001 [2025-12-00; online 2025-06-26]

PubMed DOI Crossref

Autosomal dominant primary hyperparathyroidism in the Keeshond dog breed is strongly associated with a missense variant in sirtuin-6.

Wade CM, Burmeister LM, Skelly BJ, ..., Lindblad-Toh K, Mellersh CS

Anim. Genet. 56 (6) e70056 [2025-12-00; online 2025-10-24]

PubMed DOI Crossref

Antigenic peptide delivery to antigen-presenting cells using a CD40-coiled coil affinity-based platform.

Nyesiga B, Hägerbrand K, Varas L, ..., Ellmark P, von Schantz L

Drug Deliv 32 (1) 2486340 [2025-12-00; online 2025-05-26]

DOI Crossref

A conditional two‐step approach for detecting Lewy Body pathology: smell function testing and α‐synuclein seed amplification

Mastenbroek SE, Collij LE, Vogel JW, ..., Ossenkoppele R, Hansson O

Alzheimers Dement 21 (S2) - [2025-12-00; online 2025-12-26]

DOI Crossref

Bayesian three-point water models

Nordman AT, Engblom S, van der Spoel D

npj Comput Mater 11 (1) - [2025-11-30; online 2025-11-30]

DOI Crossref

Tangerine: a new family of Starships from lichen-forming fungi

Tagirdzhanova G, Brown NE, Bucknell AH, ..., Gluck-Thaler E, Talbot NJ

- - (-) - [2025-11-27; online 2025-11-27]

PubMed DOI Crossref

Human plasma proteomic profile of clonal hematopoiesis.

Yu Z, Vromman A, Nguyen NQH, ..., Gupta RM, Natarajan P

Nat Commun 16 (1) 11688 [2025-11-27; online 2025-11-27]

PubMed DOI Crossref

Dynamic assembly of a large multidomain ribozyme visualized by cryo-electron microscopy.

Jadhav S, Maiorca M, Manigrasso J, ..., Topf M, Marcia M

Nat Commun 16 (1) 10195 [2025-11-27; online 2025-11-27]

DOI Crossref

OncoRisk: A state-of-the-art Web Server for bridging the oncogenic databases and pan-cancer cohorts to the translational oncology

Mardinoglu A, Song X, Green E, ..., Uhlén M, Zhang C

- - (-) - [2025-11-26; online 2025-11-26]

PubMed DOI Crossref

Extending the shelf life of ⁶⁸Ge/⁶⁸Ga generators via preconcentration of [⁶⁸Ga]GaCl₃ for preclinical application.

Mallapura H, Eriksson O

EJNMMI Radiopharm Chem 10 (1) 76 [2025-11-26; online 2025-11-26]

PubMed DOI Crossref

Evidence for a functional interaction between yeast Pol ε and PCNA in vivo.

Singh N, Odai R, Persson U, ..., Atkinson GC, Johansson E

Nucleic Acids Res. 53 (22) - [2025-11-26; online 2025-12-17]

PubMed DOI Crossref

Chromogranin A and catestatin regulate pancreatic islet homeostasis, endocrine function, and neurotransmitter signaling.

Muntjewerff EM, Epremidze D, Nezhyva M, ..., Mahata SK, Christoffersson G

Commun Biol 8 (1) 1684 [2025-11-26; online 2025-11-26]

Gustaf Christoffersson SciLifeLab Fellow

PubMed DOI Crossref

The AML cellular state space unveils NPM1 immune evasion subtypes with distinct clinical outcomes.

Lilljebjörn H, Peña-Martínez P, Thorsson H, ..., Orsmark-Pietras C, Fioretos T

Nat Commun 16 (1) 10592 [2025-11-25; online 2025-11-25]

DOI Crossref

Nonlinear transcriptional responses to gradual modulation of transcription factor dosage

Domingo J, Minaeva M, Morris JA, ..., Sanjana NE, Lappalainen T

- - (-) - [2025-11-25; online 2025-11-25]

DOI Crossref

The Swedish Reference Genome Portal: A Hub for Non-Human Eukaryotic Genomic Data Visualisation, Discovery, and Reuse

Lantz H, Brink D, Crean R, ..., Rung J, Fuentes-Pardo A

BISS 9 (-) - [2025-11-24; online 2025-11-24]

PubMed DOI Crossref

Proteomics discovery of MTDH and SND1 interaction vulnerabilities in ovarian cancer.

Esmaeili P, Nasimian A, Werner L, ..., Kazi JU, Levander F

Sci Rep 15 (1) 41818 [2025-11-24; online 2025-11-24]

PubMed DOI Crossref

Depression is an independent risk factor for stroke reccurence and cognitive impairment in stroke patients.

Cankaya S, Safa SS, Karakus A, ..., Kumral E, Yulug B

Transl Psychiatry 15 (1) 492 [2025-11-21; online 2025-11-21]

PubMed DOI Crossref

Genomic and biogeographic patterns of endemic geckos in the Galapagos Islands reveal population structure and species delimitation on inhabited islands.

Pozo G, Guadalupe JJ, Pozo MJ, ..., Velasco-Cedeño D, Torres ML

Sci Rep 15 (1) 41016 [2025-11-20; online 2025-11-20]

PubMed DOI Crossref

Myxococcus xanthus for active matter studies: a tutorial for its growth and potential applications.

Antúnez Domínguez JM, Pérez García L, Rivera-Yoshida N, ..., Adiels CB, Volpe G

Soft Matter 21 (45) 8602-8623 [2025-11-19; online 2025-11-19]

PubMed DOI Crossref

Local, calcium- and reward-based synaptic learning rule that enhances dendritic nonlinearities can solve the nonlinear feature binding problem.

Khodadadi Z, Trpevski D, Lindroos R, Hellgren Kotaleski J

Elife 13 (-) - [2025-11-17; online 2025-11-17]

DOI Crossref

Local, calcium- and reward-based synaptic learning rule that enhances dendritic nonlinearities can solve the nonlinear feature binding problem

Khodadadi Z, Trpevski D, Lindroos R, Hellgren Kotaleski J

Elife 13 (-) - [2025-11-17; online 2025-11-17]

PubMed DOI Crossref

Maternal exposure to trace elements and perfluoroalkyl acids and their associations with alterations of the hypothalamic-pituitary-adrenal axis.

Soomro MH, England-Mason G, Giesbrecht GF, ..., Martin JW, Dewey D

Environ. Res. 285 (Pt 2) 122379 [2025-11-15; online 2025-07-16]

PubMed DOI Crossref

Differences in the faecal microbiome of obese and non-obese pregnant women: a matched cohort study in Sweden.

Patavoukas E, Tong B, Guðnadóttir U, ..., Wiberg-Itzel E, Hugerth L

BMC Microbiol. 25 (1) 750 [2025-11-15; online 2025-11-15]

PubMed DOI Crossref

Progress and future outlook towards a safe and sustainable production and use of chemicals.

Munthe J, Bergström L, Bolinius D, ..., Witala M, Syrén PO

Commun Chem 8 (1) 350 [2025-11-14; online 2025-11-14]

PubMed DOI Crossref

Identification of protein biomarkers to differentiate between gram-negative and gram-positive infections in adults suspected of sepsis

Irani Shemirani M, Pernestig AK, Björkman J, ..., Ejdebäck M, Ståhlberg A

BMC Infect Dis 25 (1) 1576 [2025-11-14; online 2025-11-14]

Astrid von Mentzer DDLS Fellow

PubMed DOI Crossref

Giving an Enzyme Scissors: Serotonin Derivatives as Potent Organocatalytic Switches for DNA Repair Enzyme OGG1.

Varga M, Ortis F, Del Prado A, ..., Watson AJB, Michel M

J Med Chem 68 (21) 22455-22483 [2025-11-13; online 2025-10-15]

PubMed DOI Crossref

CD46 is a cellular receptor for species D human adenovirus.

Danskog K, Petersen F, Frängsmyr L, ..., Lenman A, Arnberg N

MBio 16 (11) e0158725 [2025-11-12; online 2025-09-22]

DOI Crossref

A streamlined nanopore-compatible 5PSeq protocol for rapid phenotypic antimicrobial sensitivity testing

Liu H, Huch S, Hull R, ..., Du J, Pelechano V

- - (-) - [2025-11-12; online 2025-11-12]

PubMed DOI Crossref

Targeting the parietal memory network with tDCS in MCI: study protocol for a randomized controlled trial.

Cankaya S, Akturk A, Karakus A, ..., Mardinoglu A, Yulug B

Front. Hum. Neurosci. 19 (-) 1661790 [2025-11-10; online 2025-11-10]

DOI Crossref

FOLD-FISH step-by-step protocol v1

Li-Wang X, Zetterberg A, Bienko M

- - (-) - [2025-11-07; online 2025-11-07]

PubMed DOI Crossref

Molecular profiling of ex vivo prostate cancer CAF models captures stromal heterogeneity and drug vulnerabilities.

Rantanen F, Murumägi A, Arjama M, ..., Ungureanu D, Kallioniemi O

Cell death discovery 11 (1) 507 [2025-11-06; online 2025-11-06]

PubMed DOI Crossref

Does human cytomegalovirus provide a novel therapeutic target for patients with glioblastoma?

Söderberg-Naucler C, Pantalone MR, Stragliotto G, Bartek J

Philos. Trans. R. Soc. Lond., B, Biol. Sci. 380 (1938) 20240403 [2025-11-06; online 2025-11-06]

PubMed DOI Crossref

Longitudinal development of sex differences in the limbic system is associated with age, puberty and mental health.

Matte Bon G, Walther J, Comasco E, Derntl B, Kaufmann T

Commun Biol 8 (1) 1524 [2025-11-05; online 2025-11-05]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

Unraveling the conformational landscape of amyloid precursor protein intracellular domain.

Mandal N, Skepö M

Biophys. J. 124 (21) 3527-3541 [2025-11-04; online 2025-08-14]

PubMed DOI Crossref

Keeping Wnt in check for efficient checkpoint blockade in glioblastoma.

Melssen M, Dimberg A

Proc. Natl. Acad. Sci. U.S.A. 122 (44) e2523639122 [2025-11-04; online 2025-10-27]

DOI Crossref

Single-cell multi-omics uncovers differentiation-dependent transcriptional programs shaping epigenetic subgroups in AML

Ochi Y, Liew-Littorin M, Nannya Y, ..., Lehmann S, Ogawa S

Blood 146 (Supplement 1) 5005-5005 [2025-11-03; online 2025-11-03]

PubMed DOI Crossref

Enhanced spatial clustering of single-molecule localizations with graph neural networks.

Pineda J, Masó-Orriols S, Masoliver M, ..., Volpe G, Manzo C

Nat Commun 16 (1) 9693 [2025-11-03; online 2025-11-03]

PubMed DOI Crossref

Blind prediction of complex water and ion ensembles around RNA in CASP16.

Kretsch RC, Posani E, Baulin EF, ..., Case DA, Das R

bioRxiv - (-) - [2025-11-03; online 2025-11-03]

DOI Crossref

Adaptive introgression from Pacific herring to Atlantic herring in the brackish Baltic Sea

Ferreira MS, Felkel S, Fuentes-Pardo AP, ..., Pettersson M, Andersson L

- - (-) - [2025-11-03; online 2025-11-03]

DOI Crossref

Neuroimmune interactions in the pancreas in health and disease- Identifying the components of nerve-macrophage association 2911

Sai Josyula V, Merchant K, Reiche M, ..., Lindsay R, Christoffersson G

J. Immunol. 214 (Supplement_1) - [2025-11-01; online 2025-11-20]

DOI Crossref

Longitudinal gut microbial trajectories show differences in early life LPS exposure and IFNγ responses 4153

Arzoomand A, Lou TE, Sahi M, ..., Schwenk J, Brodin P

J. Immunol. 214 (Supplement_1) - [2025-11-01; online 2025-11-20]

PubMed DOI Crossref

IntegrAlign: a comprehensive tool for multi-immunofluorescence panel integration through image alignment.

Hermet L, Laoubi L, Scavino M, ..., Caux C, Hubert M

Bioinformatics 41 (11) - [2025-11-01; online 2025-10-16]

PubMed DOI Crossref

Clonal Hematopoiesis and Risk of New-Onset Myocarditis and Pericarditis.

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Biomed. Pharmacother. 191 (-) 118447 [2025-10-00; online 2025-08-16]

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Global Ecology and Conservation 62 (-) e03757 [2025-10-00; online 2025-10-00]

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SciLifeLab Fellow Stefanos Stagkourakis

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Mallikarjuna P, Erdem C, Beorlegui RI, ..., Kamali-Moghaddam M, Landström M

Signal Transduct Target Ther 10 (1) 309 [2025-09-26; online 2025-09-26]

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Tsurumi T, Kato A, Kumar A, Morita K

Elife 14 (-) - [2025-09-24; online 2025-09-24]

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Mol Omics 21 (5) 456-463 [2025-09-22; online 2025-09-22]

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Motso A, Pelcman B, Kalinovich A, ..., Wright SC, Bengtsson T

Cell 188 (19) 5142-5156.e23 [2025-09-18; online 2025-06-23]

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Zhou Q, Lascoux M, Milesi P

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Int J Mol Sci 26 (18) - [2025-09-12; online 2025-09-12]

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Kylhammar D, Nilsson F, Dyverfeldt P, ..., Engvall J, Swahn E

Heart 111 (19) 904-909 [2025-09-11; online 2025-09-11]

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Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data

Li T, Yang Q, Acs B, ..., Chen X, Hartman J

NPJ Precis Oncol 9 (1) 310 [2025-09-09; online 2025-09-09]

Camilla Engblom SciLifeLab Fellow

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Sun S, Syrén PO

Commun Chem 8 (1) 272 [2025-09-09; online 2025-09-09]

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Höijer I, van Schendel R, Emmanouilidou A, ..., den Hoed M, Ameur A

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Hallström E, Kandavalli V, Wählby C, Hast A

PLoS ONE 20 (9) e0330265 [2025-09-08; online 2025-09-08]

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Thiazole-fused thiazoliniums with ketone warheads as covalent inhibitors targeting Cys44 of SARS-CoV-2 3CLpro.

Cao Q, Zhang Z, Zhu G, ..., Ge G, Li B

Chem. Biol. Interact. 418 (-) 111620 [2025-09-05; online 2025-06-24]

Ruisheng Xiong SciLifeLab Fellow

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PLoS Comput Biol 21 (8) e1013156 [2025-08-00; online 2025-08-29]

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Mikael Sellin SciLifeLab Fellow

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Abhishek Niroula DDLS Fellow

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A stratified treatment algorithm in psychiatry: a program on stratified pharmacogenomics in severe mental illness (Psych-STRATA): concept, objectives and methodologies of a multidisciplinary project funded by Horizon Europe.

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Eur Arch Psychiatry Clin Neurosci 275 (5) 1453-1464 [2025-08-00; online 2024-12-27]

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Epigenomic diagnosis and prognosis of Acute Myeloid Leukemia.

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Conserved architecture of a functional lncRNA-protein interaction in the DNA damage response pathway

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Erik Benson Kristoffer Sahlin SciLifeLab Fellow

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Transcription of GABAA receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder.

Stiernman L, Comasco E, Johansson M, Bixo M

Transl Psychiatry 15 (1) 255 [2025-07-23; online 2025-07-23]

Erika Comasco SciLifeLab Fellow

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Design of linear and cyclic peptide binders from protein sequence information.

Li Q, Vlachos EN, Bryant P

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Circular RNA signature of aggressive CLL with t(14;19)(q32;q13). An ERIC study.

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The Impact of Reference Genome Divergence on Ancient DNA Damage Detection in Metagenomic Contexts

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Immune development differs between preterm newborns fed mothers' own milk and donor milk.

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Establishing a Malonyl-CoA Biosensor for the Two Model Cyanobacteria Synechocystis sp. PCC 6803 and Synechococcus elongatus PCC 7942.

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Mol. Biol. Evol. 42 (7) - [2025-07-01; online 2025-07-01]

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Mol. Biol. Cell 36 (7) ar84 [2025-07-01; online 2025-05-15]

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Niu G, Toma MA, Geara J, ..., Sommar P, Xu Landén N

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Chazot N, Braga MP, Aubier TG, ..., Willmott KR, Elias M

Am Nat 206 (1) 1-15 [2025-07-00; online 2025-05-21]

DDLS Fellow Mariana Pires Braga

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IEEE Comput Graph Appl 45 (5) 64-77 [2025-06-20; online 2025-06-20]

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Kehler M, Zhou K, Kemas AM, ..., Lauschke VM, Michel M

Chemistry 31 (33) e202500382 [2025-06-12; online 2025-05-15]

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Sci Rep 15 (1) 20045 [2025-06-11; online 2025-06-11]

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Ansari SR, Imhoff ED, Suárez-López YDC, ..., Rinaldi-Ramos CM, Teleki A

Chem Mater 37 (11) 4071-4084 [2025-06-10; online 2025-05-20]

Alexandra Teleki SciLifeLab Fellow

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Kuang D, Romand S, Zvereva AS, ..., Costa A, Stael S

Curr. Biol. 35 (11) 2642-2658.e7 [2025-06-09; online 2025-05-20]

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Emotion generation and regulation in premenstrual dysphoric disorder: dysregulation of large-scale brain networks across the menstrual cycle.

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Differentially expressed transcripts associated with depressive symptoms during pregnancy and postpartum.

Björvang RD, Vrettou M, Bujanda Cundin X, ..., Comasco E, Skalkidou A

Mol. Psychiatry - (-) - [2025-06-05; online 2025-06-05]

Erika Comasco SciLifeLab Fellow

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Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN

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Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN

Elife 13 (-) - [2025-06-03; online 2025-06-03]

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A resource for whole-body gene expression map of human tissues based on integration of single cell and bulk transcriptomics.

Shi M, Méar L, Karlsson M, ..., Uhlén M, Zhang C

Genome Biol. 26 (1) 152 [2025-06-03; online 2025-06-03]

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BiGSM: Bayesian inference of gene regulatory network via sparse modelling.

Qin H, Garbulowski M, Sonnhammer ELL, Chatterjee S

Bioinformatics 41 (6) - [2025-06-02; online 2025-06-09]

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A Biological-Systems-Based Analyses Using Proteomic and Metabolic Network Inference Reveals Mechanistic Insights into Hepatic Lipid Accumulation: An IMI-DIRECT Study.

Atabaki NN, Coral DE, Pomares-Millan H, ..., Viñuela A, Franks PW

medRxiv - (-) - [2025-06-02; online 2025-06-02]

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Hum. Reprod. 40 (Supplement_1) - [2025-06-01; online 2025-06-23]

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P-129 Oxygen levels alter energy metabolism in bovine preimplantation embryos

Boskovic N, Ivask M, Yazgeldi Gunaydin G, ..., Daub CO, Kere J

Hum. Reprod. 40 (Supplement_1) - [2025-06-01; online 2025-06-23]

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Effects of the choice of the continuous phase in droplet microfluidics on internal particle manipulation with acoustophoresis.

Shi Q, Baasch T, Liu Z, ..., Barbe L, Tenje M

J Acoust Soc Am 157 (6) 4262-4272 [2025-06-01; online 2025-06-06]

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YCharOS protocol for antibody validation.

Monteiro FL, Voskuil JLA, Williams C

Nat Protoc 20 (6) 1389-1390 [2025-06-00; online 2024-12-18]

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Vestibular modulation by stimulant derivatives in a pentameric ligand-gated ion channel.

Karlsson E, Andén O, Fan C, ..., Delarue M, Lindahl E

Br J Pharmacol 182 (12) 2790-2802 [2025-06-00; online 2025-03-11]

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Schleimann-Jensen E, Sundström-Poromaa I, Meltzer-Brody S, ..., Skalkidou A, Comasco E

Br J Psychiatry 226 (6) 401-409 [2025-06-00; online 2025-06-20]

Erika Comasco SciLifeLab Fellow

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Toward clinical long-read genome sequencing for rare diseases.

Eisfeldt J, Ek M, Nordenskjöld M, Lindstrand A

Nat. Genet. 57 (6) 1334-1343 [2025-06-00; online 2025-05-07]

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Subjective, behavioural and physiological correlates of stress in women using hormonal contraceptives.

Bürger Z, Kordowich C, Kübbeler J, ..., Derntl B, Kogler L

Br J Psychiatry 226 (6) 392-400 [2025-06-00; online 2025-06-13]

Erika Comasco SciLifeLab Fellow

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Resolving the conformational ensemble of a membrane protein by integrating small-angle scattering with AlphaFold.

Lidbrink SE, Howard RJ, Haloi N, Lindahl E

PLoS Comput Biol 21 (6) e1013187 [2025-06-00; online 2025-06-27]

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Drouin-Ouellet J, Lopes M, Pereira CF

Cell Reprogram 27 (3) 95-101 [2025-06-00; online 2025-05-20]

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Comasco E, Epperson CN, Kulkarni J

Br J Psychiatry 226 (6) 329-330 [2025-06-00; online 2025-06-18]

Erika Comasco SciLifeLab Fellow

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Lee DH, Rezende LFM, Ferrari G, ..., Mucci LA, Giovannucci EL

Eur. J. Epidemiol. 40 (6) 669-679 [2025-06-00; online 2025-05-28]

DDLS Fellow Qiaoli Wang

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NAT2 activity increases cytotoxicity of anthracycline antibiotics and HDAC inhibitors.

Rameika N, Tsiara I, Zhang X, ..., Globisch D, Sjöblom T

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Magnetic microfiber hyperthermia for synergistic antimicrobial activity against methicillin-resistant Staphylococcus aureus.

Ansari SR, Grimm D, Ramachandran RV, ..., Sotiriou GA, Teleki A

Mater Today Bio 32 (-) 101862 [2025-06-00; online 2025-05-12]

Alexandra Teleki SciLifeLab Fellow

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Saloner R, Staffaroni AM, Dammer EB, ..., Casaletto KB, ALLFTD Consortium

Nat Aging 5 (6) 1143-1158 [2025-06-00; online 2025-05-16]

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Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder.

Strom NI, Gerring ZF, Galimberti M, ..., Derks EM, Mattheisen M

Nat. Genet. 57 (6) 1389-1401 [2025-06-00; online 2025-05-13]

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Fish are poor sentinels for surveillance of riverine antimicrobial resistance.

Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U

One Health 20 (-) 101026 [2025-06-00; online 2025-04-01]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Emerging multi-drug resistant and extended-spectrum β-lactamase (ESBL)-positive enterotoxigenic E. coli (ETEC) clones circulating in aquatic environments and in patients.

Joffré E, Martín-Rodríguez AJ, Justh de Neczpal A, von Mentzer A, Sjöling Å

One Health 20 (-) 100968 [2025-06-00; online 2025-01-10]

Astrid von Mentzer DDLS Fellow

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AI-first structural identification of pathogenic protein target interfaces.

Saluri M, Landreh M, Bryant P

PLoS Comput Biol 21 (6) e1013168 [2025-06-00; online 2025-06-26]

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A universal language for finding mass spectrometry data patterns.

Damiani T, Jarmusch AK, Aron AT, ..., Dorrestein PC, Wang M

Nat. Methods 22 (6) 1247-1254 [2025-06-00; online 2025-05-12]

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No evidence of transposable element bursts in the Galápagos Scalesia adaptive radiation despite hybridization, diversification and ecological niche shifts.

Cerca J, Díaz PJ, Goubert C, ..., Rieseberg LH, Martin MD

Mobile DNA 16 (1) 23 [2025-05-31; online 2025-05-31]

PubMed DOI Crossref

KRIT1 heterozygous mutations are sufficient to induce a pathological phenotype in patient-derived iPSC models of cerebral cavernous malformation.

Arce M, Erzar I, Yang F, ..., Latini R, Magnusson PU

Cell Reports 44 (5) 115576 [2025-05-27; online 2025-04-14]

DOI Crossref

Widespread potential for phototrophy and convergent reduction of lifecycle complexity in the dimorphic order Caulobacterales

Hallgren J, Dharamshi JE, Rodríguez-Gijón A, ..., Garcia SL, Jonas K

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Environmental reservoir of resistance genes for the last resort antibiotic Cefiderocol

Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppe E

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DDLS Fellow Johan Bengtsson-Palme

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1000 conifer genomes: Genome innovation, organisation and diversity

Nilsson O, Kalman TA, Delhomme N, ..., Nystedt B, Street N

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PubMed DOI Crossref

Age and Alzheimer's disease affect functional connectivity along separate axes of functional brain organization.

Rittmo J, Franzmeier N, Strandberg O, ..., Hansson O, Vogel JW

bioRxiv - (-) - [2025-05-25; online 2025-05-25]

DOI Crossref

From Structure to Immunogenicity: Decoding Correlated Dynamics at the Peptide MHC interface to Understand TCR Recognition

Resink T, Sala BM, Sun R, ..., Ljunggren HG, Achour A

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PubMed DOI Crossref

Library-based single-cell analysis of CAR signaling reveals drivers of in vivo persistence.

Perez CR, Garmilla A, Nilsson A, ..., Lauffenburger DA, Birnbaum ME

Cell Syst 16 (5) 101260 [2025-05-21; online 2025-04-10]

Avlant Nilsson DDLS Fellow

PubMed DOI Crossref

Association of matrix metalloproteinase 7 and the alpha-chain of fibrinogen at baseline with response to methotrexate at 3 months in patients with early rheumatoid arthritis.

Hambardzumyan K, Hamsten C, Lourido L, ..., Jakobsson PJ, Idborg H

BMC Rheumatol 9 (1) 56 [2025-05-21; online 2025-05-21]

DOI Crossref

Pathway activation model for personalized prediction of drug synergy

Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN

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PubMed DOI Crossref

Caveolin assemblies displace one bilayer leaflet to organize and bend membranes.

Doktorova M, Daum S, Reagle TR, ..., Kenworthy AK, Levental I

Proc. Natl. Acad. Sci. U.S.A. 122 (20) e2417024122 [2025-05-20; online 2025-05-13]

PubMed DOI Crossref

Gender differences in global antimicrobial resistance

Salehi M, Laitinen V, Bhanushali S, ..., Pärnänen K, Lahti L

NPJ Biofilms Microbiomes 11 (1) 79 [2025-05-19; online 2025-05-19]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Modelling Population-Level Hes1 Dynamics: Insights from a Multi-framework Approach.

Menz G, Engblom S

Bull. Math. Biol. 87 (6) 74 [2025-05-16; online 2025-05-16]

DOI Crossref

Chromosome-level genome assembly of Norwegian wild alpine reindeer ( Rangifer tarandus tarandus )

Tørresen OK, Tooming-Klunderud A, Skage M, ..., Mysterud A, Jakobsen KS

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PubMed DOI Crossref

Cell shapes decode molecular phenotypes in image-based spatial proteomics.

Le T, Leineweber WD, Viana MP, ..., Rafelski SM, Lundberg E

bioRxiv - (-) - [2025-05-16; online 2025-05-16]

DDLS Fellow Wei Ouyang

PubMed DOI Crossref

Uracil-induced replication stress drives mutations, genome instability, anti-cancer treatment efficacy, and resistance.

Mortusewicz O, Haslam J, Gad H, Helleday T

Mol. Cell 85 (10) 1897-1906 [2025-05-15; online 2025-05-17]

PubMed DOI Crossref

Ribosomes modulate transcriptome abundance via generalized frameshift and out-of-frame mRNA decay.

Zhang Y, Nersisyan L, Fürst E, ..., Piazza I, Pelechano V

Mol. Cell 85 (10) 2017-2031.e7 [2025-05-15; online 2025-05-17]

PubMed DOI Crossref

Nanoscale DNA tracing reveals the self-organization mechanism of mitotic chromosomes.

Beckwith KS, Brunner A, Morero NR, Jungmann R, Ellenberg J

Cell 188 (10) 2656-2669.e17 [2025-05-15; online 2025-03-24]

DOI Crossref

Community-promoted antibiotic resistance genes show increased dissemination among pathogens

Lund D, Johnning A, Holmström M, ..., Bengtsson-Palme J, Kristiansson E

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DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

A systematic implementation of padlock probing-based rolling circle amplification in an integrated microfluidic device for quantitative biomolecular analyses.

Caneira CRF, Rosa RR, Chu V, ..., Soares RRG, Conde JP

Anal. Chim. Acta 1351 (-) 343834 [2025-05-15; online 2025-02-23]

DOI Crossref

Uridine cytidine kinases dictate the therapeutic response of molnupiravir via its bioactivation

Shu H, Sharm S, Alam S, ..., Rudd SG, Zhang SM

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PubMed DOI Crossref

Extensively acquired antimicrobial-resistant bacteria restructure the individual microbial community in post-antibiotic conditions.

Baek JW, Lim S, Park N, ..., Koh A, Lee S

NPJ Biofilms Microbiomes 11 (1) 78 [2025-05-14; online 2025-05-14]

DOI Crossref

AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI

Cunha I, Panconi L, Bauer S, ..., Le Marois A, Griffié J

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PubMed DOI Crossref

The developmental factor TBX3 engages with the Wnt/β-catenin transcriptional complex in colorectal cancer to regulate metastasis genes.

Jauregi-Miguel A, Söderholm S, Weiss T, ..., Sheng G, Cantù C

Proc. Natl. Acad. Sci. U.S.A. 122 (19) e2419691122 [2025-05-13; online 2025-05-09]

DOI Crossref

Plasma membrane labelling efficiency, internalization and partitioning of functionalized fluorescent lipids as a function of lipid structure

Sezgin E

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PubMed DOI Crossref

Loss of lipid asymmetry facilitates plasma membrane blebbing by decreasing membrane lipid packing.

Wang HY, Rumin A, Doktorova M, ..., Levental KR, Levental I

Proc. Natl. Acad. Sci. U.S.A. 122 (19) e2417145122 [2025-05-13; online 2025-05-05]

DOI Crossref

Elevated KRAS protein level is associated with better survival in pancreatic cancer

Stålberg SM, Silwal-Pandit L, Hamfjord J, ..., Skålhegg BS, Kure EH

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DOI Crossref

Chemically Recyclable and Enzymatically Degradable Thermostable Polyesters with Inherent Strain from α-Pinene-Derived Chiral Diols

Ranjani G, Subramaniyan S, Lopez-Lorenzo X, Hakkarainen M, Syrén PO

ACS Sustainable Chem. Eng. 13 (18) 6696-6705 [2025-05-12; online 2025-04-25]

PubMed DOI Crossref

The effectiveness of selection in a species affects the direction of amino acid frequency evolution.

McShea H, Wheeler AL, Goodman P, ..., Huttley G, Masel J

bioRxiv - (-) - [2025-05-10; online 2025-05-10]

PubMed DOI Crossref

Phenotypic drug susceptibility testing for Mycobacterium tuberculosis variant bovis BCG in 12 hours.

Tran BM, Larsson J, Grip A, Karempudi P, Elf J

Nat Commun 16 (1) 4366 [2025-05-10; online 2025-05-10]

PubMed DOI Crossref

Mechanisms of autoimmune-mediated paraneoplastic syndromes: immune tolerance and disease pathogenesis.

Pérez-Bucio C, Behere A, Landegren N

Front Immunol 16 (-) 1608934 [2025-05-09; online 2025-05-09]

PubMed DOI Crossref

Evaluation of unsupervised learning algorithms for the classification of behavior from pose estimation data.

Mlost J, Dawli R, Liu X, Costa AR, Pollak Dorocic I

Patterns (N Y) 6 (5) 101237 [2025-05-09; online 2025-04-22]

Iskra Pollak Dorocic SciLifeLab Fellow

PubMed DOI Crossref

INLAomics for Scalable and Interpretable Spatial Multiomic Data Integration.

Arnroth L, Vickovic S

bioRxiv - (-) - [2025-05-08; online 2025-05-08]

PubMed DOI Crossref

Genome-wide association study of myocarditis and pericarditis following COVID-19 vaccination.

Cavalli M, Eriksson N, Baron T, ..., Hallberg P, Wadelius M

NPJ Vaccines 10 (1) 88 [2025-05-08; online 2025-05-08]

PubMed DOI Crossref

Topology-based metrics for finding the optimal sparsity in gene regulatory network inference.

Lundqvist N, Garbulowski M, Hillerton T, Sonnhammer ELL

Bioinformatics 41 (5) - [2025-05-06; online 2025-03-24]

PubMed DOI Crossref

De novo clustering of large long-read transcriptome datasets with isONclust3.

Petri AJ, Sahlin K

Bioinformatics 41 (5) - [2025-05-06; online 2025-04-23]

Kristoffer Sahlin SciLifeLab Fellow

DOI Crossref

Single-Shot Design of a Cyclic Peptide Inhibitor of HIV-1 Membrane Fusion with EvoBind

Daumiller D, Giammarino F, Li Q, ..., Ceña Diez R, Bryant P

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DOI Crossref

Limits of deep-learning-based RNA prediction methods

Ludaic M, Elofsson A

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DOI Crossref

Gene regulatory networks linked to GABA signalling emerge as relevant for glioblastoma pathogenesis

Nissen I, Dakhel S, Chakraborty C, ..., Erdem C, Remeseiro S

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Cemal Erdem DDLS Fellow

DOI Crossref

Spatial transcriptomics and genetically implicated genes identify putative causal tissue structures for complex traits

Kvastad L, Kollotzek A, Saghaleyni R, ..., Cao T, Lappalainen T

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PubMed DOI Crossref

Open-Source and FAIR Research Software for Proteomics.

Perez-Riverol Y, Bittremieux W, Noble WS, ..., Käll L, Fondrie WE

J. Proteome Res. 24 (5) 2222-2234 [2025-05-02; online 2025-04-23]

PubMed DOI Crossref

How to Train a Postprocessor for Tandem Mass Spectrometry Proteomics Database Search While Maintaining Control of the False Discovery Rate.

Freestone J, Käll L, Noble WS, Keich U

J. Proteome Res. 24 (5) 2266-2279 [2025-05-02; online 2025-03-31]

PubMed DOI Crossref

Dual-Nuclide Biodistribution and Therapeutic Evaluation of a Novel Antibody-Based Radiopharmaceutical in Anaplastic Thyroid Cancer Xenografts.

Lundgren Mortensen AC, Berglund H, Jha P, ..., Frejd FY, Nestor M

Mol. Cancer Ther. 24 (5) 753-762 [2025-05-02; online 2025-02-20]

PubMed DOI Crossref

Using machine learning to investigate the influence of the prenatal chemical exposome on neurodevelopment of young children.

England-Mason G, MacEachern SJ, Amador K, ..., Forkert ND, Dewey D

Neurotoxicology 108 (-) 218-230 [2025-05-00; online 2025-04-11]

PubMed DOI Crossref

The Role of Artificial Intelligence in the Evaluation of Prostate Pathology.

Egevad L, Camilloni A, Delahunt B, ..., Eklund M, Kartasalo K

Pathol Int 75 (5) 213-220 [2025-05-00; online 2025-04-14]

DDLS Fellow Kimmo Kartasalo

PubMed DOI Crossref

The Epstein-Barr virus deubiquitinase BPLF1 regulates stress-induced ribosome UFMylation and reticulophagy.

Liu J, Nagy N, Ayala-Torres C, ..., Larsson O, Masucci MG

Autophagy 21 (5) 996-1018 [2025-05-00; online 2025-01-22]

DOI Crossref

Sustained Release of Proteins Using Region‐Specific Tunable Degradability in Hydrogels through 3D Photopatterning and Complimentary Labile Bond Chemistry

Kivijärvi T, Cerrato CP, Kohlan TB, ..., Arsenian‐Henriksson M, Finne‐Wistrand A

Adv. Funct. Mater. 35 (22) - [2025-05-00; online 2025-01-19]

PubMed DOI Crossref

Spatial miRNomics: towards the integration of microRNAs in spatial biology.

Robles-Remacho A, Nilsson M

Nat. Rev. Genet. 26 (5) 291-292 [2025-05-00; online 2025-02-07]

PubMed DOI Crossref

Reply to the Letter to the Editor regarding "Early detection of pancreatic cancer: Study design and analytical considerations in biomarker discovery and early phase validation studies".

Mahoney DM, Smith LM, Wang QL, ..., Oberg AL, PCDC Biostatistics Subcommittee

Pancreatology 25 (3) 487-488 [2025-05-00; online 2025-05-10]

DDLS Fellow Qiaoli Wang

PubMed DOI Crossref

Precision nutrition for cardiometabolic diseases.

Guasch-Ferré M, Wittenbecher C, Palmnäs M, ..., Sargent JL, Merino J

Nat. Med. 31 (5) 1444-1453 [2025-05-00; online 2025-04-30]

Clemens Wittenbecher DDLS Fellow

PubMed DOI Crossref

Plasticity of the mammalian integrated stress response.

Chen CW, Papadopoli D, Szkop KJ, ..., Topisirovic I, Hatzoglou M

Nature 641 (8065) 1319-1328 [2025-05-00; online 2025-03-26]

PubMed DOI Crossref

Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence-Assisted Cancer Diagnosis.

Ji X, Salmon R, Mulliqi N, ..., Eklund M, Kartasalo K

Mod. Pathol. 38 (5) 100715 [2025-05-00; online 2025-01-16]

DDLS Fellow Kimmo Kartasalo

PubMed DOI Crossref

MEA-seqX: High-Resolution Profiling of Large-Scale Electrophysiological and Transcriptional Network Dynamics.

Emery BA, Hu X, Klütsch D, ..., Kempermann G, Amin H

Adv Sci (Weinh) 12 (20) e2412373 [2025-05-00; online 2025-04-30]

PubMed DOI Crossref

Investigating the Microbiome in Relation to Mental Distress Across Two Points During Pregnancy: Data From U.S. and Swedish Cohorts.

Kimmel M, Tong B, Devall AE, ..., Skalkidou A, Hugerth LW

Biol Psychiatry Glob Open Sci 5 (3) 100453 [2025-05-00; online 2025-01-30]

PubMed DOI Crossref

In Vitro Elimination of Highly Multidrug-Resistant Bacteria by the Lactic Acid Bacterial Drug Candidate ILP100.

Lofton-Tomenius H, Pang Y, Pallin A, ..., Roos S, Phillipson M

Infect Dis Ther 14 (5) 1119-1131 [2025-05-00; online 2025-03-31]

PubMed DOI Crossref

Identification and interpretation of risk factors for Charcot foot. Reply to Milbourn VEL, Bus SA, Game F, van Netten JJ [letter].

Tsatsaris G, Ekberg NR, Fall T, Catrina SB

Diabetologia 68 (5) 1078-1079 [2025-05-00; online 2025-02-20]

PubMed DOI Crossref

Error Reduction in Leukemia Machine Learning Classification With Conformal Prediction.

Lysenkova Wiklander M, Zachariah D, Krali O, Nordlund J

JCO Clin Cancer Inform 9 (-) e2400324 [2025-05-00; online 2025-05-28]

DOI Crossref

Advancing transdisciplinary research on Madagascar's grassy biomes to support resilience in ecosystems and livelihoods

Phelps LN, Razanatsoa E, Davis DS, ..., Vorontsova MS, Lehmann CER

Ecological Monographs 95 (2) - [2025-05-00; online 2025-07-15]

DOI Crossref

Small molecule bioactivity benchmarks are often well-predicted by counting cells

Seal S, Dee W, Shah A, ..., Bender A, Carpenter AE

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DOI Crossref

High Content Imaging Applications of Advanced and Translational Disease Models in Drug Discovery and Development

Cui W, Haffa M, Massai F, ..., Axelsson H, Seashore-Ludlow B

- - (-) 168-208 [2025-04-30; online 2025-04-30]

PubMed DOI Crossref

Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization.

Abramsson ML, Corey RA, Skerle JL, ..., Stansfeld PJ, Landreh M

Elife 14 (-) - [2025-04-30; online 2025-04-30]

DOI Crossref

Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Skerle JL, ..., Stansfeld PJ, Landreh M

Elife 14 (-) - [2025-04-30; online 2025-04-30]

DOI Crossref

Author response: Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Skerle JL, ..., Stansfeld PJ, Landreh M

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PubMed DOI Crossref

The overlooked trio: sleep duration, sampling time and physical exercise alter levels of olink-assessed blood biomarkers of cardiovascular risk.

Brandão LEM, Zhang L, Grip A, ..., Benedict C, Cedernaes J

Biomark Res 13 (1) 67 [2025-04-29; online 2025-04-29]

Daniel Espes SciLifeLab Fellow

PubMed DOI Crossref

GenePioneer: a comprehensive Python package for identification of essential genes and modules in cancer.

Haerianardakani A, Taheri G

Bioinform Adv 5 (1) vbaf094 [2025-04-29; online 2025-04-29]

PubMed DOI Crossref

Quantifying Acyl Chain Interdigitation in Simulated Bilayers via Direct Transbilayer Interactions.

Chaisson EH, Heberle FA, Doktorova M

J Chem Inf Model 65 (8) 3879-3885 [2025-04-28; online 2025-04-16]

DOI Crossref

Mitochondrial Dysfunction Induces Hepatic Lipid Accumulation and Inflammatory Responses in mtDNA Mutator Mice

Ross JM, Kim A, Berthod K, ..., Olson L, Coppotelli G

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DOI Crossref

Low anabolic independence emerges when cultivating more than three bacterial species together

Pacheco-Valenciana A, Tausch A, Veseli I, ..., Andersson AF, Garcia SL

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DOI Crossref

Multiplexed Deep Visual Proteomics Unveils Spatial Heterogeneity and Rare Endocrine States in Human Adult Pancreatic Islets

Mardamshina M, Dorka N, Thielert M, ..., Mann M, Lundberg E

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DOI Crossref

The time dimension matters: Improving mode of action classification with live-cell imaging

Forsgren E, Rietdijk J, Holmberg D, ..., Spjuth O, Jonsson P

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DOI Crossref

Local, calcium- and reward-based synaptic learning rule that enhances dendritic nonlinearities can solve the nonlinear feature binding problem

Khodadadi Z, Trpevski D, Lindroos R, Hellgren Kotaleski J

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DOI Crossref

Author response: Local, calcium- and reward-based synaptic learning rule that enhances dendritic nonlinearities can solve the nonlinear feature binding problem

Khodadadi Z, Trpevski D, Lindroos R, Hellgren Kotaleski J

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PubMed DOI Crossref

Astrocytic lipid droplets contain MHCII and may act as cogs in the antigen presentation machinery.

Beretta C, Dakhel A, Eltom K, ..., Michno WP, Erlandsson A

J Neuroinflammation 22 (1) 117 [2025-04-24; online 2025-04-24]

PubMed DOI Crossref

Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry.

Schulte D, Šiborová M, Käll L, Snijder J

Elife 14 (-) - [2025-04-23; online 2025-04-23]

DOI Crossref

Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry

Schulte D, Šiborová M, Käll L, Snijder J

Elife 14 (-) - [2025-04-23; online 2025-04-23]

PubMed DOI Crossref

Mechanisms of chemotherapy failure in refractory/relapsed acute myeloid leukemia: the role of cytarabine resistance and mitochondrial metabolism.

Yeon Chae S, Jang SY, Kim J, ..., Kim JS, Kim HI

Cell Death Dis 16 (1) 331 [2025-04-23; online 2025-04-23]

PubMed DOI Crossref

Sex differences in DNMT3A-mutant clonal hematopoiesis and the effects of estrogen.

Stomper J, Niroula A, Belizaire R, ..., Bandaru TS, Ebert BL

Cell Reports 44 (4) 115494 [2025-04-22; online 2025-04-02]

Abhishek Niroula DDLS Fellow

PubMed DOI Crossref

Omics Approach for Personalised Prevention of Type 2 Diabetes Mellitus for African and European Populations (OPTIMA): a protocol paper.

Goedecke JH, Danquah I, Abidha CA, ..., Landberg R, Olsson T

BMJ Open 15 (4) e099108 [2025-04-22; online 2025-04-22]

Clemens Wittenbecher DDLS Fellow

DOI Crossref

Genetics of canine cancer: a guide for the veterinary oncologist

Arendt ML, van der Heiden AD, Pensch R, Lindblad-Toh K

Vet. Oncol. 2 (1) - [2025-04-22; online 2025-04-22]

DOI Crossref

Abstract 5300: Spatially resolved integrated omics profiling for ADC targets in urothelial carcinoma

Panshikar P, O´Roberts E, Krantz D, ..., Ullén A, Stadler C

Cancer Res. 85 (8_Supplement_1) 5300-5300 [2025-04-21; online 2025-04-21]

DOI Crossref

Abstract 176: Simultaneous spatial characterisation of copy number change and immune cell profiling using DNA FISH and multiplexed immunofluorescence

O'Roberts EM, Panshikar P, Li-Wang X, ..., Bienko M, Stadler C

Cancer Res. 85 (8_Supplement_1) 176-176 [2025-04-21; online 2025-04-21]

DOI Crossref

Nanobinders for Synaptotagmin 1 enable the analysis of synaptic vesicle dynamics in rodent and human models

Goel R, Jevdokimenko K, Rehm R, ..., Rizzoli SO, Fornasiero EF

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DOI Crossref

A co-speciation dilemma and a lifestyle transition with genomic consequences in Wolbachia of Neotropical Drosophila

Papachristos K, Miller WJ, Klasson L

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PubMed DOI Crossref

Dynamically chiral phosphonic acid-type metallo-β-lactamase inhibitors.

Gulyás KV, Zhou L, Salamonsen D, ..., Zhu W, Erdélyi M

Commun Chem 8 (1) 119 [2025-04-19; online 2025-04-19]

PubMed DOI Crossref

Functional relevance of CASP16 nucleic acid predictions as evaluated by structure providers.

Kretsch RC, Albrecht R, Andersen ES, ..., Moult J, Kryshtafovych A

bioRxiv - (-) - [2025-04-18; online 2025-04-18]

DOI Crossref

Genomic studies in Linum shed light on the evolution of the distyly supergene and the molecular basis of convergent floral evolution

Zervakis PI, Postel Z, Losvik A, ..., Churcher A, Slotte T

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PubMed DOI Crossref

Functionalized gold nanoflowers on carbon screen-printed electrodes: an electrochemical platform for biosensing hemagglutinin protein of influenza A H1N1 virus.

Torres-Méndez CE, Nandi S, Martinovic K, ..., Mestres G, Kamali-Moghaddam M

Beilstein J Nanotechnol 16 (-) 540-550 [2025-04-16; online 2025-04-16]

DOI Crossref

AlphaFold3 at CASP16

Elofsson A

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PubMed DOI Crossref

Integrated computational and biosensor-based strategies for the discovery of allosteric SMYD3 ligands using diperodon as a starting point.

FitzGerald EA, Rachman MM, Cederfelt D, ..., Koehler K, Danielson UH

Bioorg. Med. Chem. 121 (-) 118134 [2025-04-15; online 2025-02-25]

DOI Crossref

In Vitro Evaluation of Flame-Made Calcium Phosphate Nanoparticles for Antigen Delivery and Immunostimulation

Maheshwari A, Dookie R, Gaytán MO, Henriques-Normark B, Sotiriou GA

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DOI Crossref

Phenotypic Antibiotic Susceptibility Testing at the limit of one bacterial cell

Johansson L, Ahmad I, Larsson J, ..., Fange D, Elf J

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DOI Crossref

A Systematic Host-Centric Approach to Identifying Repurposed Drugs for Viral Infections

Tampere M, Asp E, Rietdijk J, ..., Seashore-Ludlow B, Östling P

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PubMed DOI Crossref

Discovering cryptic pocket opening and binding of a stimulant derivative in a vestibular site of the 5-HT3A receptor.

Haloi N, Karlsson E, Delarue M, Howard RJ, Lindahl E

Sci Adv 11 (15) eadr0797 [2025-04-11; online 2025-04-11]

PubMed DOI Crossref

Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder.

Strom NI, Gerring ZF, Galimberti M, ..., Derks EM, Mattheisen M

medRxiv - (-) - [2025-04-08; online 2025-04-08]

PubMed DOI Crossref

Cotranslational membrane insertion of the voltage-sensitive K+ channel KvAP.

Westerfield JM, Kozojedová P, Juli C, Metola A, von Heijne G

Proc. Natl. Acad. Sci. U.S.A. 122 (14) e2412492122 [2025-04-08; online 2025-03-31]

DOI Crossref

Revisiting the African mtDNA Landscape: A Continental Update from Complete Mitochondrial Genomes

Lankheet I, Chowdhury A, Tellgren-Roth C, ..., Malmström H, Schlebusch CM

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DOI Crossref

G-quadruplex profiling in complex tissues using single-cell CUT&Tag

Lyu J, Hetey S, Castelo-Branco G, Bartosovic M, Elsässer SJ

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PubMed DOI Crossref

Long-term gamma-aminobutyric acid (GABA) treatment fails to regain beta-cell function in longstanding type 1 diabetes in a randomized trial.

Hill H, Lundkvist P, Tsatsaris G, ..., Espes D, Carlsson PO

Sci Rep 15 (1) 11530 [2025-04-04; online 2025-04-04]

Daniel Espes SciLifeLab Fellow

DOI Crossref

Revealing molecular determinants of ligand efficacy and affinity at the D 2 dopamine receptor through molecular dynamics simulations

Chen Y, Kahlous NA, Saarinen M, ..., Delemotte L, Carlsson J

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DOI Crossref

Pairwise Attention: Leveraging Mass Differences to Enhance De Novo Sequencing of Mass Spectra

Lapin J, Nilsson A, Wilhelm M, Käll L

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Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions.

Shiver AL, Sun J, Culver R, ..., Deutschbauer AM, Huang KC

Cell 188 (7) 2003-2021.e19 [2025-04-03; online 2025-03-10]

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Computational design of constitutively active mutants of Dopamine D2 receptor inspired by ligand-independent activation mechanisms

Chen Y, Saarinen M, Naraine A, ..., Svenningsson P, Delemotte L

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Affinity maturation and optimization of CD44v6-targeting antibodies for molecular radiotherapy.

Mortensen ACL, Hofström C, Persson H, ..., Frejd FY, Nestor M

Nucl. Med. Biol. 144-145 (-) 109012 [2025-04-03; online 2025-04-03]

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Oxygen level alters energy metabolism in bovine preimplantation embryos.

Boskovic N, Ivask M, Yazgeldi Gunaydin G, ..., Daub CO, Kere J

Sci Rep 15 (1) 11327 [2025-04-02; online 2025-04-02]

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Mapping Lesions That Cause Psychosis to a Human Brain Circuit and Proposed Stimulation Target.

Pines AR, Frandsen SB, Drew W, ..., Silbersweig D, Siddiqi SH

JAMA Psychiatry 82 (4) 368-378 [2025-04-01; online 2025-02-12]

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How sub-optimal are the neural representations: show me your null model.

Lenninger M, Kumar A

J. Neurophysiol. 133 (4) 1083-1085 [2025-04-01; online 2025-02-27]

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Exploiting NRF2-ARE pathway activation in papillary renal cell carcinoma.

Angori S, Lakshminarayanan H, Banaei-Esfahani A, ..., Schraml P, Moch H

Int. J. Cancer 156 (7) 1457-1469 [2025-04-01; online 2024-12-20]

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Author Correction: Characterization of a second class Ie ribonucleotide reductase.

John J, Lundin D, Branca RM, ..., Lebrette H, Högbom M

Commun Biol 8 (1) 532 [2025-04-01; online 2025-04-01]

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The need to implement FAIR principles in biomolecular simulations.

Amaro RE, Åqvist J, Bahar I, ..., Zacharias M, Orozco M

Nat. Methods 22 (4) 641-645 [2025-04-00; online 2025-04-03]

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Synthesis of novel tetrahydrobenzo[b]thiophene-3-carbonitrile (THBTC)-based heterocycles: Structural insights, reactivity profiles, and in-silico bioactivity studies

Sebhaoui J, Ashraf S, Iqbal S, ..., Turkez H, Mardinoglu A

Journal of Molecular Structure 1326 (-) 141110 [2025-04-00; online 2025-04-00]

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Reprogramming Stars #21: RNA Regulatory Mechanisms That Instruct Cell Identity-An Interview with Dr. Bruno Di Stefano.

Di Stefano B, Lopes M, Pereira CF

Cell Reprogram 27 (2) 47-52 [2025-04-00; online 2025-03-20]

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Putting cancer immunotherapy into spatial context in the clinic.

Engblom C, Lundeberg J

Nat. Biotechnol. 43 (4) 471-476 [2025-04-00; online 2025-04-15]

Camilla Engblom SciLifeLab Fellow

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Occurrence and spread of carbapenemase‐producing Enterobacterales (CPE) in the food chain in the EU/EFTA. Part 1: 2025 update

Allende A, Álvarez‐Ordóñez A, Bortolaia V, ..., Rabbås H, Peixe L

EFSA J 23 (4) - [2025-04-00; online 2025-04-00]

DDLS Fellow Johan Bengtsson-Palme

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Enabling global image data sharing in the life sciences.

Bajcsy P, Bhattiprolu S, Börner K, ..., Taylor A, Keppler A

Nat. Methods 22 (4) 672-676 [2025-04-00; online 2025-03-28]

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Correction: Umbilical cord-derived mesenchymal stromal cells preserve endogenous insulin production in type 1 diabetes: a Phase I/II randomised double-blind placebo-controlled trial.

Carlsson PO, Espes D, Sisay S, ..., Smith CIE, Svahn MG

Diabetologia 68 (4) 900-901 [2025-04-00; online 2025-02-25]

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A burden of rare copy number variants in obsessive-compulsive disorder.

Halvorsen MW, de Schipper E, Bäckman J, ..., Mataix-Cols D, Crowley JJ

Mol. Psychiatry 30 (4) 1510-1517 [2025-04-00; online 2024-10-27]

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Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25.

Yulo PRJ, Desprat N, Gerth ML, ..., Rainey PB, Hendrickson HL

Elife 13 (-) - [2025-03-31; online 2025-03-31]

DOI Crossref

Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25

Yulo PRJ, Desprat N, Gerth ML, ..., Rainey PB, Hendrickson HL

Elife 13 (-) - [2025-03-31; online 2025-03-31]

DOI Crossref

Genomic Erosion Through the Lens of Comparative Genomics

Wang X, Fontsere C, Caballero XA, ..., Pacheco C, Morales HE

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DOI Crossref

Solution architecture of G3BP1 reveals pH-dependent conformational switching underlying liquid-liquid phase separation

Han X, Sun R, Graewert MA, ..., Svergun D, Achour A

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Development of DARPin T cell engagers for specific targeting of tumor-associated HLA/peptide complexes

Venetz-Arenas N, Schulte T, Müller S, ..., Walser M, Achour A

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A Multi-Omic Phenobank Reveals Axes of Glioblastoma Growth, Invasion, and Therapeutic Vulnerability

Krona C, Kundu S, Rosen E, ..., Mangukiya HB, Nelander S

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Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Škerle J, ..., Stansfeld PJ, Landreh M

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Author response: Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Škerle J, ..., Stansfeld PJ, Landreh M

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Ectopic germinal centers in the nasal turbinates contribute to B cell immunity to intranasal viral infection and vaccination.

Gailleton R, Mathew NR, Reusch L, ..., Bemark M, Angeletti D

Proc. Natl. Acad. Sci. U.S.A. 122 (12) e2421724122 [2025-03-25; online 2025-03-20]

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Author Correction: Integrative spatial and genomic analysis of tumor heterogeneity with Tumoroscope.

Shafighi S, Geras A, Jurzysta B, ..., Lagergren J, Szczurek E

Nat Commun 16 (1) 2801 [2025-03-21; online 2025-03-21]

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Unlocking protein networks with Predictomes: The SPOC advantage.

Elofsson A

Mol. Cell 85 (6) 1050-1051 [2025-03-20; online 2025-03-22]

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Transcriptional architecture and Pol II regulation at promoters, enhancers, and enhancer clusters in Canis lupus familiaris

Himanen SV, Rabenius A, Aktay S, Tekoniemi J, Vihervaara A

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Seal milk oligosaccharides rival human milk complexity and exhibit functional dynamics during lactation

Jin C, Lundstrøm J, Cori CR, ..., Khoo KH, Bojar D

- - (-) - [2025-03-20; online 2025-03-20]

DDLS Fellow Johan Bengtsson-Palme

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Pathway activation model for personalized prediction of drug synergy

Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN

- - (-) - [2025-03-20; online 2025-03-20]

PubMed DOI Crossref

Lab-in-a-Fiber detection and capture of cells.

Varela JC, Harish AV, Maniewski P, ..., Russom A, Laurell F

Sci Rep 15 (1) 9694 [2025-03-20; online 2025-03-20]

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Author response: Pathway activation model for personalized prediction of drug synergy

Trac QT, Huang Y, Erkers T, ..., Pawitan Y, Vu TN

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Survival and adaptative strategies of Enterotoxigenic E. coli (ETEC) to the freshwater environment.

Sjöling Å, Ashokkumar E, Bjurnemark C, ..., Zhu B, Joffré E

Res Sq - (-) - [2025-03-19; online 2025-03-19]

Astrid von Mentzer DDLS Fellow

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Early gonadotoxic effects of cyclophosphamide on the prepubertal testis and the feasibility of reducing toxicity through combined antioxidant therapy

Eskafinoghani A, Reyes Palomares A, Hao X, ..., Lundberg A, Rodriguez-Walberg KA

- - (-) - [2025-03-19; online 2025-03-19]

Arian Lundberg DDLS Fellow

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Disinfecting eukaryotic reference genomes to improve taxonomic inference from ancient environmental metagenomic data

Oskolkov N, Jin C, Clinton SL, ..., Heintzman PD, van der Valk T

- - (-) - [2025-03-19; online 2025-03-19]

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Characterizing the Sulfated and Glucuronidated (Poly)phenol Metabolome for Dietary Biomarker Discovery.

Tsiara I, Hervás Povo B, Alotaibi W, ..., Rodriguez-Mateos A, Globisch D

J Agric Food Chem 73 (11) 6702-6710 [2025-03-19; online 2025-03-02]

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Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry – a perspective

Schulte D, Šiborová M, Käll L, Snijder J

- - (-) - [2025-03-18; online 2025-03-18]

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Author response: Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry – a perspective

Schulte D, Šiborová M, Käll L, Snijder J

- - (-) - [2025-03-18; online 2025-03-18]

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Immune-Coagulation Dynamics in Severe COVID-19: Insights from Autoantibody Profiling and Transcriptomics

Ambikan AT, Cederholm A, Rezene S, ..., Landegren N, Gupta S

- - (-) - [2025-03-17; online 2025-03-17]

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Disrupted bone microenvironment and immune recovery following total body irradiation in a murine model

Sághy T, Gupta P, Horkeby K, ..., Chagin AS, Engdahl C

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Markers of inflammation predicts long-term mortality in patients with acute coronary syndrome - a cohort study.

Odeberg J, Halling A, Ringborn M, ..., Odeberg H, Lindblad U

BMC Cardiovasc Disord 25 (1) 190 [2025-03-15; online 2025-03-15]

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Construction of an atlas of transcription factor binding during mouse development identifies popular regulatory regions.

Nordin A, Zambanini G, Enar Jonasson M, ..., Pagella P, Cantù C

Development 152 (6) - [2025-03-15; online 2025-03-24]

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LN’s -Test: A Principled Approach to -Testing in Single-Cell RNA Sequencing

Kviman O, Jun SH, Lagergren J

- - (-) - [2025-03-14; online 2025-03-14]

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Common connective tissue disorder and anti-cytokine autoantibodies are enriched in idiopathic multicentric castleman disease patients.

Feng A, Gonzalez MV, Kalaycioglu M, ..., Fajgenbaum DC, Utz PJ

Front Immunol 16 (-) 1528465 [2025-03-13; online 2025-03-13]

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Visible-Light-Switchable Molecular Glues for Reversible Control of Protein Function.

Zhang J, Herzog LK, Li S, Chen X, Wu YW

Chemistry 31 (15) e202403808 [2025-03-12; online 2025-01-21]

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Cover Feature: Visible‐Light‐Switchable Molecular Glues for Reversible Control of Protein Function (Chem. Eur. J. 15/2025)

Zhang J, Herzog LK, Li S, Chen X, Wu Y

Chemistry 31 (15) - [2025-03-12; online 2025-03-12]

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An artificial motor protein that walks along a DNA track

Nilsson P, Robertson NO, Gustafsson N, ..., Linke H, Curmi PMG

- - (-) - [2025-03-12; online 2025-03-12]

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Abstract A017: Enhanced efficacy of anti-mesothelin CAR T cells in ovarian cancer through drug combinations: Impact of treatment kinetics, co-stimulatory domain, and donor variability

Pizarro LR, Poiret T, Gudoitytė G, ..., Magalhaes I, Erkers T

Cancer Res. 85 (5_Supplement) A017-A017 [2025-03-11; online 2025-03-11]

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Abstract 072: Plasma Metabolome Predicts Long-term Body Weight Gain and Type 2 Diabetes in Non-Obese Individuals

Wu Z, Liu B, Li J, ..., Hu Y, Sun Q

Circulation 151 (Suppl_1) - [2025-03-11; online 2025-03-11]

Clemens Wittenbecher DDLS Fellow

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cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads

Petri AJ, Thi-Huyen Nguyen M, Rajwar A, Benson E, Sahlin K

- - (-) - [2025-03-10; online 2025-03-10]

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Droplet microfluidics-based detection of very rare antibiotic-resistant subpopulation in clinical isolates of Escherichia coli from bloodstream infections

Agnihotri SN, Fatsis-Kavalopoulos N, Windhager J, Tenje M, Andersson DI

- - (-) - [2025-03-10; online 2025-03-10]

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Regulatory Effects of RNA-Protein Interactions Revealed by Reporter Assays of Bacteria Grown on Solid Media.

Pérez-Ropero G, Dolcemascolo R, Pérez-Ràfols A, ..., Rodrigo G, Buijs J

Biosensors (Basel) 15 (3) - [2025-03-08; online 2025-03-08]

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Predicting allergy and postpartum depression from an incomplete compositional microbiome

Shternshis A, Tong B, Skalkidou A, ..., Hugerth LW, Singh P

- - (-) - [2025-03-06; online 2025-03-06]

Prashant Singh SciLifeLab Fellow

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Organelle-Specific Thiochromenocarbazole Imide Derivative as a Heavy-Atom-Free Type I Photosensitizer for Biomolecule-Triggered Image-Guided Photodynamic Therapy.

Saczuk K, Kassem A, Dudek M, ..., Cabanetos C, Deiana M

J Phys Chem Lett 16 (9) 2273-2282 [2025-03-06; online 2025-02-23]

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Amino Acid Properties, Substitution Rates, and the Nearly Neutral Theory.

James JE, Lascoux M

Genome Biol Evol 17 (3) - [2025-03-06; online 2025-02-20]

PubMed DOI Crossref

adiposetissue.org: A knowledge portal integrating clinical and experimental data from human adipose tissue.

Zhong J, Zareifi D, Weinbrenner S, ..., Mejhert N, Rydén M

Cell Metab. 37 (3) 566-569 [2025-03-04; online 2025-02-20]

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Regulation of gene expression through protein-metabolite interactions.

Hornisch M, Piazza I

NPJ Metab Health Dis 3 (1) 7 [2025-03-04; online 2025-03-04]

PubMed DOI Crossref

Quantitative imaging of loop extruders rebuilding interphase genome architecture after mitosis.

Brunner A, Morero NR, Zhang W, ..., Beckwith KS, Ellenberg J

J. Cell Biol. 224 (3) - [2025-03-03; online 2025-01-09]

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Investigating Interaction Dynamics of an Enantioselective Peptide‐Catalyzed Acylation Reaction

Brauser M, Petzold K, Thiele CM

Angewandte Chemie 137 (10) - [2025-03-03; online 2024-12-12]

PubMed DOI Crossref

Investigating Interaction Dynamics of an Enantioselective Peptide-Catalyzed Acylation Reaction.

Brauser M, Petzold K, Thiele CM

Angew. Chem. Int. Ed. Engl. 64 (10) e202421062 [2025-03-03; online 2024-12-12]

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Androgen Receptor Inhibition Increases MHC Class I Expression and Improves Immune Response in Prostate Cancer.

Chesner LN, Polesso F, Graff JN, ..., Feng FY, Moran AE

Cancer Discov 15 (3) 481-494 [2025-03-03; online 2024-12-09] Open Access

Arian Lundberg DDLS Fellow

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Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies

Williams EC, Franzén L, Lindvall MO, ..., Tan J, Mohorianu I

- - (-) - [2025-03-02; online 2025-03-02]

PubMed DOI Crossref

Transcriptional enhancers in human neuronal differentiation provide clues to neuronal disorders.

Yoshihara M, Coschiera A, Bachmann JA, ..., Sahlén P, Kere J

EMBO Rep. 26 (5) 1212-1237 [2025-03-00; online 2025-02-13]

PubMed DOI Crossref

Specifying cellular context of transcription factor regulons for exploring context-specific gene regulation programs.

Minaeva M, Domingo J, Rentzsch P, Lappalainen T

NAR Genomics and Bioinformatics 7 (1) lqae178 [2025-03-00; online 2025-01-07]

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Recent advances in precision nutrition and cardiometabolic diseases.

Martínez-González MA, Planes FJ, Ruiz-Canela M, ..., Razquin C, Hu FB

Rev Esp Cardiol (Engl Ed) 78 (3) 263-271 [2025-03-00; online 2024-09-30]

Clemens Wittenbecher DDLS Fellow

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Nelarabine in T-cell acute lymphoblastic leukemia: intracellular metabolism and molecular mode-of-action.

Hormann FM, Rudd SG

Leukemia 39 (3) 531-542 [2025-03-00; online 2025-02-17]

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Guidelines for minimal reporting requirements, design and interpretation of experiments involving the use of eukaryotic dual gene expression reporters (MINDR).

Loughran G, Andreev DE, Terenin IM, ..., Dmitriev SE, Baranov PV

Nat. Struct. Mol. Biol. 32 (3) 418-430 [2025-03-00; online 2025-03-03]

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Enzymatic degradation of phthalate esters in the environment: Advances, challenges and opportunities

Sun S, Syrén PO

Chem Eng J 508 (-) 160640 [2025-03-00; online 2025-03-00]

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Click Chemistry-Based Bioconjugation of Iron Oxide Nanoparticles.

Asad S, Ahl D, Suárez-López YDC, ..., Phillipson M, Teleki A

Small 21 (11) e2407883 [2025-03-00; online 2025-02-09]

Alexandra Teleki SciLifeLab Fellow

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Baseline characteristics and 1-year outcome by left ventricular function in the CABG PREFERS.

Löfström U, Linde C, Eriksson MJ, ..., Persson H, Hage C

Eur Heart J Open 5 (2) oeaf014 [2025-03-00; online 2025-03-05]

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Avances en nutrición de precisión y enfermedades cardiometabólicas

Martínez-González MA, Planes FJ, Ruiz-Canela M, ..., Razquin C, Hu FB

Revista Española de Cardiología 78 (3) 263-271 [2025-03-00; online 2025-03-00]

Clemens Wittenbecher DDLS Fellow

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Sulfilimines: An Underexplored Bioisostere for Drug Design?

Arvidsson PI

J Med Chem 68 (4) 4056-4058 [2025-02-27; online 2025-01-31]

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Structure and dynamics of a multidomain ligand-gated ion channel revealed under acidic conditions

Andén O, Rovšnik U, Lycksell M, ..., Howard RJ, Lindahl E

- - (-) - [2025-02-27; online 2025-02-27]

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Isolation of individual natural killer cells from deep, high-aspect ratio microwell arrays - an evaluative study

Verron Q, Sandström N, van Ooijen H, ..., Frisk T, Önfelt B

- - (-) - [2025-02-27; online 2025-02-27]

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Geographical variation in mitogenomes of the largetooth sawfish Pristis pristis : challenges and perspectives for conservation efforts

Rodrigues AÉS, Brito RMS, Charvet P, ..., Ready JS, Sales JBL

- - (-) - [2025-02-27; online 2025-02-27]

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CombiCTx: Screening diffusion gradients of anti-cancer drug combinations

Stelzl C, Lerma-Clavero A, Camenisch S, ..., Kreuger J, O’Callaghan P

- - (-) - [2025-02-27; online 2025-02-27]

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Calcium stabilization of a flexible N-terminal domain in a pentameric ligand-gated ion channel

Fan C, Lycksell M, Zhuang Y, Howard RJ, Lindahl E

- - (-) - [2025-02-27; online 2025-02-27]

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Editorial: Allergen-specific antibodies: from basic science to clinical application.

Flicker S, Ohlin M, Atanasio A, Pomés A

Front Allergy 6 (-) 1568735 [2025-02-26; online 2025-02-26]

PubMed DOI Crossref

Functional proteoform group deconvolution reveals a broader spectrum of ibrutinib off-targets.

Leo IR, Kunold E, Audrey A, ..., Lehtiö J, Jafari R

Nat Commun 16 (1) 1948 [2025-02-25; online 2025-02-25]

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Evaluating feature extraction in ovarian cancer cell line co-cultures using deep neural networks.

Sharma O, Gudoityte G, Minozada R, ..., Paavolainen L, Seashore-Ludlow B

Commun Biol 8 (1) 303 [2025-02-25; online 2025-02-25]

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Genome-wide profiling of tRNA modifications reveal the presence of divergent signatures in Plasmodium falciparum

Li Q, Veith Y, Christ E, ..., Larsson O, Chan SCL

- - (-) - [2025-02-24; online 2025-02-24]

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Spatial mapping of DNA synthesis reveals dynamics and geometry of human replication nanostructures

Hawgood M, Urién González B, Agostinho A, ..., Blom H, Lemmens B

- - (-) - [2025-02-23; online 2025-02-23]

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Retinal tau phosphorylation in Alzheimer’s disease: a mass spectrometry study

Santiago J, Poceviciute D, Vogel J, Brinkmalm G, Wennström M

- - (-) - [2025-02-23; online 2025-02-23]

PubMed DOI Crossref

Uncovering pre-cytokinetic block in cancer cells under shear stress using a disturbed flow-generating device.

Beresova L, Vitecek J, Protivánková I, ..., Bartek J, Mistrik M

Sci Rep 15 (1) 6457 [2025-02-22; online 2025-02-22]

PubMed DOI Crossref

Characterization of a second class Ie ribonucleotide reductase.

John J, Lundin D, Branca RM, ..., Lebrette H, Högbom M

Commun Biol 8 (1) 281 [2025-02-22; online 2025-02-22]

DOI Crossref

Sheathless elasto-inertial focusing of sub-25 nm particles in straight microchannels

Tanriverdi S, Cruz J, Habibi S, ..., Sezgin E, Russom A

- - (-) - [2025-02-21; online 2025-02-21]

PubMed DOI Crossref

Sequence-dependent scale for translocon-mediated insertion of interfacial helices in membranes.

Grau B, Kormos R, Bañó-Polo M, ..., DeGrado WF, Mingarro I

Sci Adv 11 (8) eads6804 [2025-02-21; online 2025-02-19]

PubMed DOI Crossref

Development of an In Situ G Protein-Coupled Receptor Fragment Molecule Screening Approach with High-Resolution Magic Angle Spinning Nuclear Magnetic Resonance.

Petracco E, Ferré G, Kabelka I, ..., Allais F, Eddy MT

ACS chemical biology 20 (2) 401-411 [2025-02-21; online 2025-01-21]

PubMed DOI Crossref

Biological signatures in the Alzheimer's continuum discriminate between diagnosis-related and -unrelated associations to ATN categories.

Alanko V, Mravinacová S, Hall A, ..., Månberg A, Matton A

Brain Commun 7 (2) fcaf078 [2025-02-21; online 2025-02-21]

PubMed DOI Crossref

Data-driven resources and computational tools in non-model plant species.

Street NR

Physiol Plant 177 (1) e70133 [2025-02-20; online 2025-02-20]

PubMed DOI Crossref

Applying 3D cultures and high-throughput technologies to study host-pathogen interactions.

De Martinis ECP, Alves VF, Pereira MG, ..., Dannborg M, Bengtsson-Palme J

Front Immunol 16 (-) 1488699 [2025-02-20; online 2025-02-20]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Genetic adaptation to amoxicillin in Escherichia coli: The limited role of dinB and katE.

Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B

PLoS ONE 20 (2) e0312223 [2025-02-19; online 2025-02-19]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

A new understanding of Acanthamoeba castellanii: dispelling the role of bacterial pore-forming toxins in cyst formation and amoebicidal actions.

Yabrag A, Ullah N, Baryalai P, ..., Wai SN, Nadeem A

Cell death discovery 11 (1) 66 [2025-02-19; online 2025-02-19]

PubMed DOI Crossref

Integrative proteo-transcriptomic characterization of advanced fibrosis in chronic liver disease across etiologies.

Yang H, Atak D, Yuan M, ..., Mardinoglu A, Zeybel M

Cell Rep Med 6 (2) 101935 [2025-02-18; online 2025-01-30]

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Evolutionary rescue of spherical mreB deletion mutants of the rod-shape bacterium Pseudomonas fluorescens SBW25

Yulo PRJ, Desprat N, Gerth ML, ..., Rainey PB, Hendrickson HL

- - (-) - [2025-02-18; online 2025-02-18]

DOI Crossref

The cellular state space of AML unveils novel NPM1 subtypes with distinct clinical outcomes and immune evasion properties

Lilljebjörn H, Peña-Martínez P, Thorsson H, ..., Orsmark-Pietras C, Fioretos T

- - (-) - [2025-02-17; online 2025-02-17]

PubMed DOI Crossref

Synthesis and Characterization of Memantine-Loaded Niosomes for Enhanced Alzheimer's Disease Targeting.

Turkez H, Oner S, Yıldırım OC, ..., Di Stefano A, Mardinoglu A

Pharmaceutics 17 (2) - [2025-02-17; online 2025-02-17]

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PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity

Larralde M, Zeller G, Carroll LM

- - (-) - [2025-02-17; online 2025-02-17]

DDLS Fellow Laura Carroll

PubMed DOI Crossref

Maintenance of cell wall remodeling and vesicle production are connected in Mycobacterium tuberculosis.

Salgueiro-Toledo VC, Bertol J, Gutierrez C, ..., Sanz J, Prados-Rosales R

Elife 13 (-) - [2025-02-17; online 2025-02-17]

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Maintenance of cell wall remodeling and vesicle production are connected in Mycobacterium tuberculosis

Salgueiro-Toledo VC, Bertol J, Gutierrez C, ..., Sanz J, Prados-Rosales R

Elife 13 (-) - [2025-02-17; online 2025-02-17]

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Maternal concentrations of perfluoroalkyl sulfonates and alterations in white matter microstructure in the developing brains of young children.

England-Mason G, Reardon AJF, Reynolds JE, ..., Lebel C, Dewey D

Environ. Res. 267 (-) 120638 [2025-02-15; online 2024-12-15]

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Towards an interpretable deep learning model of cancer.

Nilsson A, Meimetis N, Lauffenburger DA

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Avlant Nilsson DDLS Fellow

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Sub-5 nm Silicon Nanopore Sensors: Scalable Fabrication via Self-Limiting Metal-Assisted Chemical Etching.

De Ferrari F, Raja SN, Herland A, Niklaus F, Stemme G

ACS Appl Mater Interfaces 17 (6) 9047-9058 [2025-02-12; online 2025-01-30]

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Secure and federated quantitative trait loci mapping with privateQTL.

Choi YA, Kim Y, Miao P, Lappalainen T, Gürsoy G

Cell Genom 5 (2) 100769 [2025-02-12; online 2025-02-14]

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Dynamical organization of vimentin intermediate filaments in living cells revealed by MoNaLISA nanoscopy.

Smoler M, Pennacchietti F, De Rossi MC, ..., Testa I, Levi V

Biosci. Rep. 45 (2) - [2025-02-12; online 2025-02-12]

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Cryo-EM ligand building using generative AI and molecular dynamics

Haloi N, Howard RJ, Lindahl E

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Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats.

Yang H, Zhang C, Kim W, ..., Turkez H, Mardinoglu A

Elife 13 (-) - [2025-02-11; online 2025-02-11]

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Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats

Yang H, Zhang C, Kim W, ..., Turkez H, Mardinoglu A

Elife 13 (-) - [2025-02-11; online 2025-02-11]

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Rapid Evolution of Host Repertoire and Geographic Range in a Young and Diverse Genus of Montane Butterflies.

Mo S, Zhu Y, Braga MP, ..., Zhang P, Wang H

Syst. Biol. 74 (1) 141-157 [2025-02-10; online 2024-11-01]

DDLS Fellow Mariana Pires Braga

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Modular Photoswitchable Molecular Glues for Chemo‐Optogenetic Control of Protein Function in Living Cells

Zhang J, Herzog LK, Corkery DP, ..., Li Y, Wu Y

Angewandte Chemie 137 (7) - [2025-02-10; online 2025-01-21]

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Modular Photoswitchable Molecular Glues for Chemo-Optogenetic Control of Protein Function in Living Cells.

Zhang J, Herzog LK, Corkery DP, ..., Li Y, Wu YW

Angew. Chem. Int. Ed. Engl. 64 (7) e202416456 [2025-02-10; online 2025-01-21]

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Begum N, Lee S, Almeida M, ..., Shoiae S, Moyes DL

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Spectral STED microscopy improves spectral sensitivity with polarity-sensitive probes and enables correlative measurements of membrane order and anomalous lipid diffusion

Urbančič I, Schneider F, Galiani S, Sezgin E, Eggeling C

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Modeling cryo-EM structures in alternative states with generative AI and density-guided simulations

Shugaeva T, Howard RJ, Haloi N, Lindahl E

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Design, Synthesis, and Computational Evaluation of 3,4-Dihydroquinolin-2(1H)-One Analogues as Potential VEGFR2 Inhibitors in Glioblastoma Multiforme.

Buhlak S, Abad N, Akachar J, ..., Türkez H, Mardinoglu A

Pharmaceuticals (Basel, Switzerland) 18 (2) - [2025-02-08; online 2025-02-08]

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Disparate and shared transcriptomic signatures associated with cortical atrophy in genetic behavioral variant frontotemporal degeneration.

Shen T, Vogel JW, Van Deerlin VM, ..., Irwin DJ, McMillan CT

Mol Neurodegener 20 (1) 17 [2025-02-07; online 2025-02-07]

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Accurate Protein Dynamic Conformational Ensembles: Combining AlphaFold, MD and Amide 15 N( 1 H) NMR Relaxation

Lesovoy D, Roshchin K, Sala BM, ..., Orekhov V, Agback P

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Molecular basis of proton sensing by G protein-coupled receptors.

Howard MK, Hoppe N, Huang XP, ..., Coyote-Maestas W, Manglik A

Cell 188 (3) 671-687.e20 [2025-02-06; online 2025-01-02]

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Localized Nanopore Fabrication in Silicon Nitride Membranes by Femtosecond Laser Exposure and Subsequent Controlled Breakdown.

Leva CV, Jain S, Kistermann K, ..., Niklaus F, Raja SN

ACS Appl Mater Interfaces 17 (5) 8737-8748 [2025-02-05; online 2025-01-27]

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Repeated positron emission tomography tracing neutrophil elastase in a porcine intensive-care sepsis model.

Wilske F, Eriksson O, Amini RM, ..., Castegren M, Antoni G

Intensive Care Med Exp 13 (1) 14 [2025-02-04; online 2025-02-04]

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Tumor-Associated Macrophages Improve The Efficacy Of SMAC Mimetics Combined With Chemotherapy In Ovarian Cancer

Coelho R, Seashore-Ludlow B, Schütz S, ..., Heinzelmann-Schwarz V, Jacob F

International Journal of Gynecological Cancer 35 (2) 101462 [2025-02-00; online 2025-02-00]

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ProHap enables human proteomic database generation accounting for population diversity.

Vašíček J, Kuznetsova KG, Skiadopoulou D, ..., Käll L, Vaudel M

Nat. Methods 22 (2) 273-277 [2025-02-00; online 2024-12-09]

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Mechanisms of neutralization of toxSAS from toxin-antitoxin modules.

Dominguez-Molina L, Kurata T, Cepauskas A, ..., Hauryliuk V, Garcia-Pino A

Nat. Chem. Biol. 21 (2) 182-192 [2025-02-00; online 2024-06-04]

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Machine learning prediction of tau-PET in Alzheimer's disease using plasma, MRI, and clinical data.

Karlsson L, Vogel J, Arvidsson I, ..., Mattsson-Carlgren N, Hansson O

Alzheimers Dement 21 (2) e14600 [2025-02-00; online 2025-02-22]

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Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection.

Lian W, Lindblad J, Runow Stark C, Hirsch JM, Sladoje N

Comput Biol Med 185 (-) 109498 [2025-02-00; online 2024-12-10]

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Cerebrospinal fluid levels of NfM in relation to NfL and pNfH as prognostic markers in amyotrophic lateral sclerosis.

Olofsson J, Bergström S, Mravinacová S, ..., Nilsson P, Månberg A

Amyotroph Lateral Scler Frontotemporal Degener 26 (1-2) 113-123 [2025-02-00; online 2024-11-22]

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Cell Painting: a decade of discovery and innovation in cellular imaging.

Seal S, Trapotsi MA, Spjuth O, ..., Bender A, Carpenter AE

Nat. Methods 22 (2) 254-268 [2025-02-00; online 2024-12-05]

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Ceftazidime-avibactam tolerance and persistence among difficult-to-treat KPC-producing Klebsiella pneumoniae clinical isolates from bloodstream infections.

Abichabki N, Gaspar GG, Bortolato LR, ..., Darini ALC, Andrade LN

Eur. J. Clin. Microbiol. Infect. Dis. 44 (2) 343-353 [2025-02-00; online 2024-11-30]

DDLS Fellow Johan Bengtsson-Palme

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BPS2025 - Lipid and voltage regulation of Na+/H+ exchangers

Drew D

Biophysical Journal 124 (3) 352a [2025-02-00; online 2025-02-00]

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Pan R, Kusay AS, Frampton DJA, Delemotte L, Liin SI

Biophysical Journal 124 (3) 123a [2025-02-00; online 2025-02-00]

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BPS2025 - Cardiotoxic effects of synthetic cannabinoid receptor agonists: Inhibition of hERG and Kv7.1/KCNE1 channels with proposed hERG binding site

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Biophysical Journal 124 (3) 277a-278a [2025-02-00; online 2025-02-00]

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BPS2025 - Cardiotoxic effects of synthetic cannabinoid receptor agonists: Inhibition of hERG and Kv7.1/KCNE1 channels with proposed hERG binding site

Frampton DJA, Pipatpolkai T, Sridhar A, ..., Ottosson NE, Liin SI

Biophysical Journal 124 (3) 345a [2025-02-00; online 2025-02-00]

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Author Correction: Cell Painting: a decade of discovery and innovation in cellular imaging.

Seal S, Trapotsi MA, Spjuth O, ..., Bender A, Carpenter AE

Nat. Methods 22 (2) 447 [2025-02-00; online 2024-12-13]

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Adaptation of Escherichia coli to ciprofloxacin and enrofloxacin: Differential proteomics of the SOS response and RecA-independent mechanisms.

Teichmann L, Pasman R, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B

Int. J. Antimicrob. Agents 65 (2) 107420 [2025-02-00; online 2024-12-30]

DDLS Fellow Johan Bengtsson-Palme

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Acute Vestibular Syndrome Unmasking an RFC1-Spectrum Disorder.

Verrecchia L, Alm V, Thonberg H, ..., Nilsson D, Paucar M

Neurol Genet 11 (1) e200238 [2025-02-00; online 2025-01-16]

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A Microfluidic Platform for In Situ Studies of Bacteria Electroporation (Adv. Mater. Technol. 4/2025)

Volkov IL, Khaji Z, Johansson M, Tenje M

Adv Materials Technologies 10 (4) - [2025-02-00; online 2025-02-19]

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A Microfluidic Platform for In Situ Studies of Bacteria Electroporation

Volkov IL, Khaji Z, Johansson M, Tenje M

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Trogocytosis of chimeric antigen receptors between T cells is regulated by their transmembrane domains.

Barbera S, Schuiling MJA, Sanjaya NA, ..., Essand M, Dimberg A

Sci Immunol 10 (103) eado2054 [2025-01-31; online 2025-01-31]

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Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells.

Schaepe JM, Fries T, Doughty BR, ..., Marklund E, Greenleaf WJ

bioRxiv - (-) - [2025-01-30; online 2025-01-30]

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Photosynthesis in Synechocystis sp. PCC 6803 is not optimally regulated under very high CO2.

Carrasquer-Alvarez E, Hoffmann UA, Geissler AS, ..., Hudson EP, Frigaard NU

Appl. Microbiol. Biotechnol. 109 (1) 33 [2025-01-30; online 2025-01-30]

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Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats

Yang H, Zhang C, Kim W, ..., Turkez H, Mardinoglu A

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Author response: Multi-tissue network analysis reveals the effect of JNK inhibition on dietary sucrose-induced metabolic dysfunction in rats

Yang H, Zhang C, Kim W, ..., Turkez H, Mardinoglu A

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The genetic architecture of resistance to flubendiamide insecticide in Helicoverpa armigera (Hübner).

Amado D, Koch EL, Cordeiro EMG, ..., Jiggins CD, Omoto C

PLoS ONE 20 (1) e0318154 [2025-01-29; online 2025-01-29]

Gabriela Montejo-Kovacevich SciLifeLab Fellow

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Cellular and immune landscape of chronic liver diseases: insights from immunophenotyping.

Soleimani S, Albayrak O, Somay K, ..., Dayangac M, Zeybel M

Front Mol Biosci 11 (-) 1521811 [2025-01-29; online 2025-01-29]

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Evolution of complexity through regulatory variation at a single gene.

Ferreira MS

Proc. Natl. Acad. Sci. U.S.A. 122 (4) e2424050122 [2025-01-28; online 2025-01-21]

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Probing the Hidden Photoisomerization of a Symmetric Phosphaalkene Switch

Deka R, Steen JD, Hilbers MF, ..., Orthaber A, Crespi S

Angewandte Chemie 137 (5) - [2025-01-27; online 2024-12-13]

Ruisheng Xiong SciLifeLab Fellow

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Native Mass Spectrometry Captures the Conformational Plasticity of Proteins with Low-Complexity Domains.

Osterholz H, Stevens A, Abramsson ML, ..., Leppert A, Landreh M

JACS Au 5 (1) 281-290 [2025-01-27; online 2025-01-08]

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Met-ID: An Open-Source Software for Comprehensive Annotation of Multiple On-Tissue Chemical Modifications in MALDI-MSI

Bjärterot P, Nilsson A, Shariatgorji R, ..., Käll L, Andrén PE

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FlashFold: a standalone command-line tool for accelerated protein structure and stoichiometry prediction

Saha CK, Roghanian M, Häussler S, Guy L

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Telomemore enables single-cell analysis of cell cycle and chromatin condensation.

Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J

Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]

DDLS Fellow Laura Carroll

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Mettl15-Mettl17 modulates the transition from early to late pre-mitoribosome.

Zgadzay Y, Mirabello C, Wanes G, ..., Gahura O, Amunts A

bioRxiv - (-) - [2025-01-24; online 2025-01-24]

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Multiomic profiling of metastatic potential in estrogen receptor-positive human epidermal growth factor-negative breast cancer

Mosquim S, Zamore M, Vallon-Christersson J, Rydén L, Levander F

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Characterizing and targeting glioblastoma neuron-tumor networks with retrograde tracing.

Tetzlaff SK, Reyhan E, Layer N, ..., Heiland DH, Venkataramani V

Cell 188 (2) 390-411.e36 [2025-01-23; online 2024-12-06]

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Proper 5'-3' cotranslational mRNA decay in yeast requires import of Xrn1 to the nucleus.

Jordán-Pla A, Zhang Y, García-Martínez J, ..., Pelechano V, Pérez-Ortín JE

PLoS ONE 20 (1) e0308195 [2025-01-22; online 2025-01-22]

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Emotion regulation-based internet-delivered cognitive behavioural therapy for premenstrual dysphoric disorder: study protocol for a randomised controlled trial in Sweden.

Hoppe JM, Weise C, Kleinstaeuber M, ..., Andersson G, Buhrman M

BMJ Open 15 (1) e091649 [2025-01-22; online 2025-01-22]

Erika Comasco SciLifeLab Fellow

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All-Optical Strategies to Minimize Photo-Bleaching in Reversibly Switchable Fluorescent Proteins

Marín-Aguilera G, Pennacchietti F, Volpato A, ..., Widengren J, Testa I

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Fluoroquinolone-specific resistance trajectories in E. coli and their dependence on the SOS-response.

Teichmann L, Luitwieler S, Bengtsson-Palme J, Ter Kuile B

BMC Microbiol. 25 (1) 37 [2025-01-21; online 2025-01-21]

DDLS Fellow Johan Bengtsson-Palme

DOI Crossref

Oligodendroglia vulnerability in the human dorsal striatum in Parkinson’s disease

Barba-Reyes JM, Harder L, Salas SM, ..., Serrano-Pozo A, Muñoz-Manchado AB

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Single-Cell Morphological Profiling Reveals Insights into Programmed Cell Death

Frey B, Holmberg D, Byström P, ..., Carreras-Puigvert J, Spjuth O

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PubMed DOI Crossref

Syngap1 promotes cognitive function through regulation of cortical sensorimotor dynamics.

Vaissiere T, Michaelson SD, Creson T, ..., Fontolan L, Rumbaugh G

Nat Commun 16 (1) 812 [2025-01-18; online 2025-01-18]

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Simultaneous polyclonal antibody sequencing and epitope mapping by cryo electron microscopy and mass spectrometry – a perspective

Schulte D, Šiborová M, Käll L, Snijder J

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Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.

Meimetis N, Lauffenburger DA, Nilsson A

STAR Protoc 6 (1) 103573 [2025-01-16; online 2025-01-16]

Avlant Nilsson DDLS Fellow

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Immune dynamics throughout life in relation to sex hormones and perspectives gained from gender-affirming hormone therapy.

Yalcinkaya A, Yalcinkaya R, Sardh F, Landegren N

Front Immunol 15 (-) 1501364 [2025-01-16; online 2025-01-16]

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Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Škerle J, ..., Stansfeld PJ, Landreh M

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DOI Crossref

Author response: Engineering cardiolipin binding to an artificial membrane protein reveals determinants for lipid-mediated stabilization

Abramsson ML, Corey RA, Škerle J, ..., Stansfeld PJ, Landreh M

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DOI Crossref

Whole-genome duplication increases genetic diversity and load in outcrossing Arabidopsis

Vlček J, Hämälä T, Cobo CV, ..., Yant L, Kolář F

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PubMed DOI Crossref

Liquid crystal nanoparticles for oral combination antibiotic therapies: A strategy towards protecting commensal gut bacteria during treatment.

He X, Karlsson PA, Xiong R, ..., Bergström CAS, Hubert M

J Colloid Interface Sci 678 (Pt B) 287-300 [2025-01-15; online 2024-08-31]

Ruisheng Xiong SciLifeLab Fellow

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Lipoproteins and lipoprotein lipid composition are associated with stages of dysglycemia and subclinical coronary atherosclerosis.

Gigante B, Chen Q, Björkbacka H, ..., Haglöw JT, Östgren CJ

Int. J. Cardiol. 419 (-) 132698 [2025-01-15; online 2024-11-03]

DOI Crossref

Front Cover: Conformational Selection in Enzyme‐Catalyzed Depolymerization of Bio‐based Polyesters (ChemBioChem 2/2025)

Lopez‐Lorenzo X, Ranjani G, Syrén P

Chembiochem 26 (2) - [2025-01-14; online 2025-01-29]

PubMed DOI Crossref

Conformational Selection in Enzyme-Catalyzed Depolymerization of Bio-based Polyesters.

Lopez-Lorenzo X, Ranjani G, Syrén PO

Chembiochem 26 (2) e202400456 [2025-01-14; online 2024-09-17]

DOI Crossref

Advancing Chronic Liver Disease Diagnoses: Targeted Proteomics for the Non-Invasive Detection of Fibrosis

Villanueva Raisman A, Kotol D, Altay O, ..., Zeybel M, Edfors F

Livers 5 (1) 2 [2025-01-14; online 2025-01-14]

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Functionalized gold nanoflowers on carbon screen-printed electrodes: an electrochemical platform for biosensing hemagglutinin protein of influenza A H1N1 virus

Torres Méndez CE, Nandi S, Martinovic K, ..., Mestres G, Kamali-Moghaddam M

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PubMed DOI Crossref

White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study.

Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E

Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 [2025-01-10; online 2024-10-23]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

Adaptive sampling-based structural prediction reveals opening of a GABAA receptor through the αβ interface.

Haloi N, Eriksson Lidbrink S, Howard RJ, Lindahl E

Sci Adv 11 (2) eadq3788 [2025-01-10; online 2025-01-08]

PubMed DOI Crossref

Influenza A Virus H7 nanobody recognizes a conserved immunodominant epitope on hemagglutinin head and confers heterosubtypic protection.

Chen ZS, Huang HC, Wang X, ..., Zhu Q, Angeletti D

Nat Commun 16 (1) 432 [2025-01-09; online 2025-01-09]

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DTPPI: predicting drug interactions using a weighted drug-protein network

Szydlik S, Taheri G

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DDLS Fellow Golnaz Taheri

PubMed DOI Crossref

Cardiovascular events following coronavirus disease 2019 vaccination in adults: a nationwide Swedish study.

Xu Y, Li H, Santosa A, ..., Gisslén M, Nyberg F

Eur. Heart J. 46 (2) 147-157 [2025-01-07; online 2024-09-30]

PubMed DOI Crossref

The Pfam protein families database: embracing AI/ML.

Paysan-Lafosse T, Andreeva A, Blum M, ..., Wood V, Bateman A

Nucleic Acids Res. 53 (D1) D523-D534 [2025-01-06; online 2024-11-14]

PubMed DOI Crossref

Targeting mutant p53: Evaluation of novel anti-p53R175H monoclonal antibodies as diagnostic tools.

Spiegelberg D, Hwang LA, Pua KH, ..., Nestor M, Lane D

Sci Rep 15 (1) 1000 [2025-01-06; online 2025-01-06]

PubMed DOI Crossref

Multi-omics characterization of improved cognitive functions in Parkinson's disease patients after the combined metabolic activator treatment: a randomized, double-blinded, placebo-controlled phase II trial.

Yulug B, Altay O, Li X, ..., Uhlén M, Mardinoglu A

Brain Commun 7 (1) fcae478 [2025-01-06; online 2025-01-06]

PubMed DOI Crossref

MirGeneDB 3.0: improved taxonomic sampling, uniform nomenclature of novel conserved microRNA families and updated covariance models.

Clarke AW, Høye E, Hembrom AA, ..., Peterson KJ, Fromm B

Nucleic Acids Res. 53 (D1) D116-D128 [2025-01-06; online 2024-12-14]

DOI Crossref

Maintenance of cell wall remodeling and vesicle production are connected in Mycobacterium tuberculosis

Salgueiro V, Bertol J, Gutierrez C, ..., Sanz J, Prados-Rosales R

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PubMed DOI Crossref

FunCoup 6: advancing functional association networks across species with directed links and improved user experience.

Buzzao D, Persson E, Guala D, Sonnhammer ELL

Nucleic Acids Res. 53 (D1) D658-D671 [2025-01-06; online 2024-11-13]

DOI Crossref

Author response: Maintenance of cell wall remodeling and vesicle production are connected in Mycobacterium tuberculosis

Salgueiro V, Bertol J, Gutierrez C, ..., Sanz J, Prados-Rosales R

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DOI Crossref

TCR clonality and TCR clonal expansion in the in situ microenvironment of non-small cell lung cancer

Yu H, Magoulopoulou A, Amini RM, ..., Strell C, Micke P

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DOI Crossref

Human iPSC-based coculture model reveals neuroinflammatory crosstalk between microglia and astrocytes

Tujula I, Hyvärinen T, Lotila J, ..., Narkilahti S, Hagman S

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PubMed DOI Crossref

Addressing inter individual variability in CSF levels of brain derived proteins across neurodegenerative diseases.

Mravinacová S, Bergström S, Olofsson J, ..., Nilsson P, Månberg A

Sci Rep 15 (1) 668 [2025-01-03; online 2025-01-03]

PubMed DOI Crossref

A propofol binding site in the voltage sensor domain mediates inhibition of HCN1 channel activity.

Burtscher V, Wang L, Cowgill J, ..., Evers AS, Chanda B

Sci Adv 11 (1) eadr7427 [2025-01-03; online 2025-01-03]

PubMed DOI Crossref

DGCR2 targeting affibody molecules for delivery of drugs and imaging reagents to human beta cells.

Cheung P, Persson J, Zhang B, ..., Löfblom J, Eriksson O

Sci Rep 15 (1) 417 [2025-01-02; online 2025-01-02]

DOI Crossref

Nucleobase catalysts for the enzymatic activation of 8-oxoguanine DNA glycosylase 1

Hank EC, D'Arcy-Evans N, Scaletti ER, ..., Helleday T, Michel M

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PubMed DOI Crossref

Identification and hazard prioritization of hydrophobic organic chemicals in flowback and produced water particles: Implications for water management.

Lin H, Zhong C, Wen R, ..., Alessi DS, He Y

Water Res 268 (Pt B) 122674 [2025-01-01; online 2024-10-21]

PubMed DOI Crossref

The human and non-human primate developmental GTEx projects.

Coorens THH, Guillaumet-Adkins A, Kovner R, ..., Van Hoose PM, dGTEx Consortium

Nature 637 (8046) 557-564 [2025-01-00; online 2025-01-15]

PubMed DOI Crossref

The Human Pathology Atlas for deciphering the prognostic features of human cancers.

Yuan M, Zhang C, Von Feilitzen K, ..., Uhlén M, Mardinoglu A

EBioMedicine 111 (-) 105495 [2025-01-00; online 2024-12-10]

PubMed DOI Crossref

TRACERx analysis identifies a role for FAT1 in regulating chromosomal instability and whole-genome doubling via Hippo signalling.

Lu WT, Zalmas LP, Bailey C, ..., Kanu N, Swanton C

Nat. Cell Biol. 27 (1) 154-168 [2025-01-00; online 2024-12-30]

PubMed DOI Crossref

Proteomic signatures of Alzheimer's disease and Lewy body dementias: A comparative analysis.

Canal-Garcia A, Branca RM, Francis PT, ..., Pereira JB, Bereczki E

Alzheimers Dement 21 (1) e14375 [2025-01-00; online 2024-12-23]

PubMed DOI Crossref

Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females.

Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E

Front Neuroendocrinol 76 (-) 101160 [2025-01-00; online 2024-11-06]

Erika Comasco SciLifeLab Fellow

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Predicting gene distribution in ammonia-oxidizing archaea using phylogenetic signals.

Redondo MA, Jones CM, Legendre P, Guénard G, Hallin S

ISME Commun 5 (1) ycaf087 [2025-01-00; online 2025-05-23]

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International multicenter validation of AI-driven ultrasound detection of ovarian cancer.

Christiansen F, Konuk E, Ganeshan AR, ..., Smith K, Epstein E

Nat. Med. 31 (1) 189-196 [2025-01-00; online 2025-01-02]

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Disease characteristics and outcomes of acute myeloid leukemia in germline RUNX1 deficiency (Familial Platelet Disorder with associated Myeloid Malignancy).

Ernst MPT, Versluis J, Valk PJM, ..., Ripperger T, Raaijmakers MHGP

Hemasphere 9 (1) e70057 [2025-01-00; online 2025-01-16]

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Capacity and limitations of microfluidic flow to increase solute transport in three-dimensional cell cultures.

Bonneuil WV, Katiyar N, Tenje M, Bagheri S

J R Soc Interface 22 (222) 20240463 [2025-01-00; online 2025-01-29]

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Bacteria use exogenous peptidoglycan as a danger signal to trigger biofilm formation.

Vaidya S, Saha D, Rode DKH, ..., Cava F, Drescher K

Nat. Microbiol 10 (1) 144-157 [2025-01-00; online 2025-01-03]

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Unveiling Driver Modules in Lung Cancer: A Clustering-Based Gene-Gene Interaction Network Analysis

Taheri G, Szalai M, Habibi M, Papapetrou P

- - (-) 41-58 [2025-00-00; online 2025-01-01]

DDLS Fellow Golnaz Taheri

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The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape

Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T

- - (-) - [2025-00-00; online 2025-00-00]

DDLS Fellow Tobias Andermann

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Strategies for taxonomic and functional annotation of metagenomes

Abramova A, Bengtsson-Palme J

- - (-) 57-81 [2025-00-00; online 2025-00-00]

DDLS Fellow Johan Bengtsson-Palme

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PKLR-Modulating Compounds Show Promising Effects for the Treatment of Hepatocellular Carcinoma

Kim W, Jin H, Miao P, ..., Zhang C, Mardinoglu A

- - (-) - [2025-00-00; online 2025-00-00]

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Multi-Omics Analysis Reveals Key Factors Associated with the Parkinson's Disease Severity

Mardinoglu A, Jin H, Meng L, ..., Zhang C, Uhlen M

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Minimising Source-Plate Swaps for Robotised Compound Dispensing in Microplates

Gindullin R, Francisco Rodríguez MA, Seashore-Ludlow B, Spjuth O

- - (-) 256-273 [2025-00-00; online 2025-06-29]

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Menstrual cycle-related changes in the human brain

Pletzer B, Comasco E, Hidalgo-Lopez E, ..., Sundström-Poromaa I, Derntl B

- - (-) 604-623 [2025-00-00; online 2024-02-12]

Erika Comasco SciLifeLab Fellow

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Limited Effects of Tetracycline and Ciprofloxacin on Soil Bacterial Communities

Wenne M, Abramova A, Bengtsson-Palme J

- - (-) - [2025-00-00; online 2025-00-00]

DDLS Fellow Johan Bengtsson-Palme

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Interdisciplinary Study on Drug-Induced-Phospholipidosis of Repurposing Libraries Through Machine Learning and Experimental Evaluation in Different Cell Lines

Kuzikov M, Kalman A, Reinshagen J, ..., Gribbon P, Zaliani A

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Engineering Kyat1 to Enhance Msc Metabolism for Selenium-Based Cancer Therapy

Selvam A, Sun R, Sandalova T, ..., Achour A, Björnstedt M

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Distinct Spatiotemporal Inflammatory Programs Underlying Experimental Chronic Colitis

Fransson J, Sorini C, Castillo F, ..., Smith P, Villablanca EJ

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Demographic and Clinical Characteristics of Early-Onset Colorectal Cancer in Scandinavia: A Retrospective Cohort Study Comparing Populations and Time

Charalambidi MM, Hukkinen T, Kaprio T, ..., Böckelman C, Gkekas I

- - (-) - [2025-00-00; online 2025-00-00]

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An Anti-Cea Affibody Showing High-Definition Staining in Human Pancreatic Cancer Tissue Sections and Selective Tumor Targeting in Vivo

Nygren PÅ, Papalanis E, Novin M, ..., Achour A, Björnstedt M

- - (-) - [2025-00-00; online 2025-00-00]

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Advances in whole genome methylomic sequencing

Nordlund J

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11: To remap or not to remap: the relevance of the genome references to resolve rare inversions

Carvalho CMB, Saether KB, Bengtsson J, ..., Marom R, Lindstrand A

Genetics in Medicine Open 3 (-) 101928 [2025-00-00; online 2025-00-00]

Publications 2025

697 publications