Publications 2025

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99 publications

PubMed DOI Crossref
Chromogranin A and catestatin regulate pancreatic islet homeostasis, endocrine function, and neurotransmitter signaling.
Muntjewerff EM, Epremidze D, Nezhyva M, ..., Mahata SK, Christoffersson G
Commun Biol 8 (1) 1684 [2025-11-26; online 2025-11-26]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Ultraprocessed Food Consumption and Risk of Early-Onset Colorectal Cancer Precursors Among Women.
Wang C, Du M, Kim H, ..., Cao Y, Chan AT
JAMA Oncol - (-) - [2025-11-13; online 2025-11-13]
DDLS Fellow Qiaoli Wang
PubMed DOI Crossref
Clonal Hematopoiesis and Major Adverse Cardiac Events in People With HIV: Insights From the REPRIEVE Trial.
Xue L, Bhattacharya R, Uddin MM, ..., Grinspoon SK, Natarajan P
Arterioscler. Thromb. Vasc. Biol. - (-) - [2025-11-06; online 2025-11-06]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Longitudinal development of sex differences in the limbic system is associated with age, puberty and mental health.
Matte Bon G, Walther J, Comasco E, Derntl B, Kaufmann T
Commun Biol 8 (1) 1524 [2025-11-05; online 2025-11-05]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Clonal Hematopoiesis and Risk of New-Onset Myocarditis and Pericarditis.
Schuermans A, Flynn S, Niroula A, ..., Natarajan P, Honigberg MC
JAMA Cardiol 10 (11) 1147-1156 [2025-11-01; online 2025-09-01]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
White Matter Regional Volumes in Relation to Menstrual Cycle Phase and Premenstrual Dysphoric Disorder.
Stenhammar E, Dubol M, Stiernman L, ..., Bixo M, Comasco E
Biol Psychiatry Glob Open Sci 5 (6) 100573 [2025-11-00; online 2025-07-28]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Thermodynamic principles link in vitro transcription factor affinities to single-molecule chromatin states in cells
Schaepe JM, Fries T, Doughty BR, ..., Marklund E, Greenleaf WJ
Cell - (-) - [2025-11-00; online 2025-11-00]
Emil Marklund SciLifeLab Fellow
PubMed DOI Crossref
Tissue and cellular spatiotemporal dynamics in colon aging.
Daly AC, Cambuli F, Äijö T, ..., Regev A, Vickovic S
Nat. Biotechnol. - (-) - [2025-10-22; online 2025-10-22]
Sanja Vickovic SciLifeLab Fellow
PubMed DOI Crossref
Association of estrogen receptor single nucleotide polymorphisms and perinatal depression.
Björvang RD, Gumbo LF, Årdahl A, ..., Fransson E, Skalkidou A
PLoS ONE 20 (10) e0334705 [2025-10-16; online 2025-10-16]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Artificial intelligence-assisted prostate cancer diagnosis for reduced use of immunohistochemistry
Blilie A, Mulliqi N, Ji X, ..., Eklund M, Kartasalo K
Commun Med (Lond) 5 (1) - [2025-10-15; online 2025-10-15]
DDLS Fellow Kimmo Kartasalo
DOI Crossref
Discovering the unseen: a performance comparison of taxonomic classification methods for unknown DNA barcodes
Orsholm J, Zito A, Somervuo P, ..., Roslin T, Furneaux B
- - (-) - [2025-10-14; online 2025-10-14]
DDLS Fellow Mariana Pires Braga
PubMed DOI Crossref
Electrospun PLGA fibers with calcium phosphate nanoparticles: effects of nanoparticle crystallinity and carbonate content on osteogenic activity.
Suárez-López YDC, Ramachandran RV, Platania V, ..., Chatzinikolaidou M, Sotiriou GA
Biomater Sci 13 (20) 5863-5873 [2025-10-07; online 2025-10-07]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Plasma Metabolome, Long-term Body Weight Change, and Type 2 Diabetes in U.S. Individuals.
Wu Z, Liu B, Li J, ..., Hu Y, Sun Q
Diabetes Care 48 (10) 1818-1826 [2025-10-01; online 2025-08-13]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Hierarchical Vision Transformers for prostate biopsy grading: Towards bridging the generalization gap.
Grisi C, Kartasalo K, Eklund M, ..., van der Laak J, Litjens G
Med Image Anal 105 (-) 103663 [2025-10-00; online 2025-07-07]
DDLS Fellow Kimmo Kartasalo
PubMed DOI Crossref
Maternal aggression driven by the transient mobilisation of a dormant hormone-sensitive circuit.
Stagkourakis S, Williams P, Spigolon G, ..., Fisone G, Broberger C
Nat Commun 16 (1) 8553 [2025-09-29; online 2025-09-29]
SciLifeLab Fellow Stefanos Stagkourakis
PubMed DOI Crossref
Liquid biomarkers associate with TGF-β Type I receptor and hypoxia in kidney cancer.
Mallikarjuna P, Erdem C, Beorlegui RI, ..., Kamali-Moghaddam M, Landström M
Signal Transduct Target Ther 10 (1) 309 [2025-09-26; online 2025-09-26]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
Tertiary lymphoid structures in Merkel cell carcinoma facilitate naïve and central memory T-cell infiltration linked to immunotherapy response.
Srinivas N, Spassova I, Lei KC, ..., Lui WO, Becker JC
J Immunother Cancer 13 (9) - [2025-09-23; online 2025-09-23]
Camilla Engblom SciLifeLab Fellow
DOI Crossref
Gene copy number variation (gCNV) contributes to adaptation along environmental gradient
Zhou Q, Lascoux M, Milesi P
- - (-) - [2025-09-16; online 2025-09-16]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
Evolvability: progress and key questions
Pélabon C, Agudelo-Cantero GA, Araya Ajoy YG, ..., Walling C, Wright J
BioScience - (-) - [2025-09-09; online 2025-09-09]
DDLS Fellow Lisandro Milocco
PubMed DOI Crossref
Computational pathology annotation enhances the resolution and interpretation of breast cancer spatial transcriptomics data.
Li T, Yang Q, Acs B, ..., Chen X, Hartman J
NPJ Precis Oncol 9 (1) 310 [2025-09-09; online 2025-09-09]
Camilla Engblom SciLifeLab Fellow
PubMed DOI Crossref
Thiazole-fused thiazoliniums with ketone warheads as covalent inhibitors targeting Cys44 of SARS-CoV-2 3CLpro.
Cao Q, Zhang Z, Zhu G, ..., Ge G, Li B
Chem. Biol. Interact. 418 (-) 111620 [2025-09-05; online 2025-06-24]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
Genetic variation of the estrogen receptor and its association with depression and anxiety symptoms in young females.
Musaoglu MN, Olofsdotter S, Vadlin S, ..., Nieratschker V, Comasco E
Prog Neuropsychopharmacol Biol Psychiatry 142 (-) 111485 [2025-09-05; online 2025-09-05]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Understanding the transport of drugs across biomimetic barriers of various phospholipid compositions using a combined experimental and computational approach.
Kabedev A, Tønning MH, Teleki A, Bauer-Brandl A, Jacobsen AC
Colloids Surf B Biointerfaces 253 (-) 114706 [2025-09-00; online 2025-04-21]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Gene and pathway analysis of genome-wide genetic associations of bladder cancer.
Shi M, Meng X, Xu X, Wang Q
Curr Urol 19 (5) 321-330 [2025-09-00; online 2025-06-05]
DDLS Fellow Qiaoli Wang
PubMed DOI Crossref
Contextualizing Telomere Biology Through Biopsychological Plasticity: Insights From the Differential Susceptibility Hypothesis.
Comasco E
Biol Psychiatry Glob Open Sci 5 (5) 100548 [2025-09-00; online 2025-06-07]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
A Base-Mediated Rearrangement of the Benzylic 1,5-Hexadipyridynyl Moiety.
Remmerswaal WA, Nguyen TT, Han Z, ..., Zhu W, Erdelyi M
Chempluschem 90 (9) e202500252 [2025-09-00; online 2025-08-04]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
Colchicine and Longitudinal Dynamics of Clonal Hematopoiesis: An Exploratory Substudy of the LoDoCo2 Trial.
Mohammadnia N, Xue L, Vestjens LTW, ..., El Messaoudi S, Honigberg MC
J. Am. Coll. Cardiol. - (-) - [2025-08-29; online 2025-08-29]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
NAIP/NLRC4 inflammasome dynamics in murine enteroids are tuned by NAIP ligand concentration and epithelial cell differentiation.
Andreassen PR, Ernst C, Pimentel Mendes M, ..., Hardt WD, Vorholt JA
Cell Reports 44 (8) 116143 [2025-08-26; online 2025-08-20]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Flame-made nanoparticles for magnetic hyperthermia and MRI in colorectal cancer theranostics.
Zhang Y, Paraskeva C, Chen Q, ..., Koliaraki V, Teleki A
Nanoscale Adv 7 (17) 5284-5299 [2025-08-19; online 2025-07-16]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Matrix-M adjuvant triggers inflammasome activation and enables antigen cross-presentation through induction of lysosomal membrane permeabilization.
Zarnegar B, Carow B, Eriksson J, ..., Stertman L, Lunderius Andersson C
NPJ Vaccines 10 (1) 184 [2025-08-05; online 2025-08-05]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Risk of atherosclerotic cardiovascular disease after cancer diagnosis: findings from 3 prospective cohort studies.
Liu Q, Wang Q, Wang K, ..., Song M, Giovannucci E
J. Natl. Cancer Inst. 117 (8) 1707-1716 [2025-08-01; online 2025-05-30]
DDLS Fellow Qiaoli Wang
PubMed DOI Crossref
Mechanistic modeling of cell viability assays with in silico lineage tracing.
Mutsuddy A, Huggins JR, Amrit AK, ..., Calhoun JC, Birtwistle MR
PLoS Comput Biol 21 (8) e1013156 [2025-08-00; online 2025-08-29]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
Mast Cell Phenotypic Heterogeneity Impacts the Interplay with Pathogenic Salmonella Typhimurium Bacteria.
von Beek C, Prensa GI, Andersson JHM, Pejler G, Sellin ME
Eur. J. Immunol. 55 (8) e70040 [2025-08-00; online 2025-08-21]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy.
Liu J, Tran D, Xue L, ..., Natarajan P, Bolton KL
Nat. Genet. 57 (8) 1872-1880 [2025-08-00; online 2025-07-15]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
cONcat: Computational reconstruction of concatenated fragments from long Oxford Nanopore reads.
Petri AJ, Thi-Huyen Nguyen M, Rajwar A, Benson E, Sahlin K
PLoS ONE 20 (7) e0321246 [2025-07-24; online 2025-07-24]
Erik Benson Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Transcription of GABAA receptor subunits in circulating monocytes and association to emotional brain function in premenstrual dysphoric disorder.
Stiernman L, Comasco E, Johansson M, Bixo M
Transl Psychiatry 15 (1) 255 [2025-07-23; online 2025-07-23]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
ApoB-containing lipoproteins: count, type, size, and risk of coronary artery disease.
Morze J, Melloni GEM, Wittenbecher C, ..., Sabatine MS, Marston NA
Eur. Heart J. 46 (27) 2691-2701 [2025-07-14; online 2025-04-28]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Determinants of divergent Salmonella and Shigella epithelial colonization strategies resolved in human enteroids and colonoids.
Geiser P, Di Martino ML, Lopes ACC, ..., Eriksson J, Sellin ME
MBio 16 (7) e0091125 [2025-07-09; online 2025-05-30]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Optimized Artificial Colonic Mucus Enabling Physiologically Relevant Diffusion Studies of Drugs, Particles, and Delivery Systems.
Tjakra M, Chakrapeesirisuk N, Jacobson M, ..., Teleki A, Bergström CAS
Mol. Pharm. 22 (7) 4032-4045 [2025-07-07; online 2025-06-10]
Alexandra Teleki Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Development and retrospective validation of an artificial intelligence system for diagnostic assessment of prostate biopsies: study protocol.
Mulliqi N, Blilie A, Ji X, ..., Kartasalo K, Eklund M
BMJ Open 15 (7) e097591 [2025-07-07; online 2025-07-07]
DDLS Fellow Kimmo Kartasalo
PubMed DOI Crossref
High-throughput DNA melt measurements enable improved models of DNA folding thermodynamics.
Ke Y, Sharma E, Wayment-Steele HK, ..., Marklund E, Greenleaf WJ
Nat Commun 16 (1) 5572 [2025-07-01; online 2025-07-01]
Emil Marklund SciLifeLab Fellow
PubMed DOI Crossref
A genome-wide association study in 10,000 individuals links plasma N-glycome to liver disease and anti-inflammatory proteins.
Sharapov S, Timoshchuk A, Zaytseva O, ..., Lauc G, Aulchenko YS
Nat Commun 16 (1) 5525 [2025-07-01; online 2025-07-01]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
When numbers matter: Rethinking the role of gene duplication on short evolutionary timescales.
Lindstedt F, Zhou Q, Milesi P
American journal of botany 112 (7) e70072 [2025-07-00; online 2025-07-09]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
The value of mental science: we publish what matters.
Malhi GS, Adlington K, Al-Diwani A, ..., Zisman-Ilani Y, Fernandez-Egea E
Br J Psychiatry 227 (1) 429-433 [2025-07-00; online 2025-06-09]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Genetic structure and diversity of the declining orchid Gymnadenia conopsea in Scandinavia: implications for conservation and management
Söderquist L, Joffard N, Scofield DG, ..., Karrenberg S, Sletvold N
Ecography 2025 (7) - [2025-07-00; online 2025-03-19]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Bending the Course of Evolution: How Mutualistic Interactions Affect Macroevolutionary Dynamics of Diversification in Mimetic Ithomiini Butterflies.
Chazot N, Braga MP, Aubier TG, ..., Willmott KR, Elias M
Am Nat 206 (1) 1-15 [2025-07-00; online 2025-05-21]
DDLS Fellow Mariana Pires Braga
PubMed DOI Crossref
A scalable gut epithelial organoid model reveals the genome-wide colonization landscape of a human-adapted pathogen.
Di Martino ML, Jenniches L, Bhetwal A, ..., Barquist L, Sellin ME
Nat. Genet. 57 (7) 1730-1741 [2025-07-00; online 2025-06-12]
Mikael Sellin SciLifeLab Fellow
DOI Crossref
Accelerating Simulation-Based Inference with Variational Autoencoders
Nautiyal M, Shternshis A, Hellander A, Singh P
- - (-) 1-10 [2025-06-30; online 2025-06-30]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Flame-Made Doped Iron Oxide Nanoparticles as Tracers for Magnetic Particle Imaging.
Ansari SR, Imhoff ED, Suárez-López YDC, ..., Rinaldi-Ramos CM, Teleki A
Chem Mater 37 (11) 4071-4084 [2025-06-10; online 2025-05-20]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Emotion generation and regulation in premenstrual dysphoric disorder: dysregulation of large-scale brain networks across the menstrual cycle.
Stiernman L, Dubol M, Comasco E, ..., Stiernman L, Bixo M
Biol. Psychiatry - (-) - [2025-06-06; online 2025-06-06]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Differentially expressed transcripts associated with depressive symptoms during pregnancy and postpartum.
Björvang RD, Vrettou M, Bujanda Cundin X, ..., Comasco E, Skalkidou A
Mol. Psychiatry - (-) - [2025-06-05; online 2025-06-05]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Trajectories and dimensional phenotypes of depressive symptoms throughout pregnancy and postpartum in relation to prior premenstrual symptoms.
Schleimann-Jensen E, Sundström-Poromaa I, Meltzer-Brody S, ..., Skalkidou A, Comasco E
Br J Psychiatry 226 (6) 401-409 [2025-06-00; online 2025-06-20]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Subjective, behavioural and physiological correlates of stress in women using hormonal contraceptives.
Bürger Z, Kordowich C, Kübbeler J, ..., Derntl B, Kogler L
Br J Psychiatry 226 (6) 392-400 [2025-06-00; online 2025-06-13]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Psychiatric symptoms on the ovarian hormone roller-coaster.
Comasco E, Epperson CN, Kulkarni J
Br J Psychiatry 226 (6) 329-330 [2025-06-00; online 2025-06-18]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Postdiagnosis physical activity and dietary inflammatory and insulinemic potential with overall survival in men with nonmetastatic prostate cancer.
Lee DH, Rezende LFM, Ferrari G, ..., Mucci LA, Giovannucci EL
Eur. J. Epidemiol. 40 (6) 669-679 [2025-06-00; online 2025-05-28]
DDLS Fellow Qiaoli Wang
PubMed DOI Crossref
Magnetic microfiber hyperthermia for synergistic antimicrobial activity against methicillin-resistant Staphylococcus aureus.
Ansari SR, Grimm D, Ramachandran RV, ..., Sotiriou GA, Teleki A
Mater Today Bio 32 (-) 101862 [2025-06-00; online 2025-05-12]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Fish are poor sentinels for surveillance of riverine antimicrobial resistance.
Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U
One Health 20 (-) 101026 [2025-06-00; online 2025-04-01]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Environmental reservoir of resistance genes for the last resort antibiotic Cefiderocol
Gschwind R, Bonnet M, Abramova A, ..., Bengtsson-Palme J, Ruppe E
- - (-) - [2025-05-26; online 2025-05-26]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Gender differences in global antimicrobial resistance
Salehi M, Laitinen V, Bhanushali S, ..., Pärnänen K, Lahti L
NPJ Biofilms Microbiomes 11 (1) 79 [2025-05-19; online 2025-05-19]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Community-promoted antibiotic resistance genes show increased dissemination among pathogens
Lund D, Johnning A, Holmström M, ..., Bengtsson-Palme J, Kristiansson E
- - (-) - [2025-05-15; online 2025-05-15]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
De novo clustering of large long-read transcriptome datasets with isONclust3.
Petri AJ, Sahlin K
Bioinformatics 41 (5) - [2025-05-06; online 2025-04-23]
Kristoffer Sahlin SciLifeLab Fellow
DOI Crossref
Gene regulatory networks linked to GABA signalling emerge as relevant for glioblastoma pathogenesis
Nissen I, Dakhel S, Chakraborty C, ..., Erdem C, Remeseiro S
- - (-) - [2025-05-05; online 2025-05-05]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
The Role of Artificial Intelligence in the Evaluation of Prostate Pathology.
Egevad L, Camilloni A, Delahunt B, ..., Eklund M, Kartasalo K
Pathol Int 75 (5) 213-220 [2025-05-00; online 2025-04-14]
DDLS Fellow Kimmo Kartasalo
PubMed DOI Crossref
Reply to the Letter to the Editor regarding "Early detection of pancreatic cancer: Study design and analytical considerations in biomarker discovery and early phase validation studies".
Mahoney DM, Smith LM, Wang QL, ..., Oberg AL, PCDC Biostatistics Subcommittee
Pancreatology 25 (3) 487-488 [2025-05-00; online 2025-05-10]
DDLS Fellow Qiaoli Wang
PubMed DOI Crossref
Precision nutrition for cardiometabolic diseases.
Guasch-Ferré M, Wittenbecher C, Palmnäs M, ..., Sargent JL, Merino J
Nat. Med. 31 (5) 1444-1453 [2025-05-00; online 2025-04-30]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Physical Color Calibration of Digital Pathology Scanners for Robust Artificial Intelligence-Assisted Cancer Diagnosis.
Ji X, Salmon R, Mulliqi N, ..., Eklund M, Kartasalo K
Mod. Pathol. 38 (5) 100715 [2025-05-00; online 2025-01-16]
DDLS Fellow Kimmo Kartasalo
DOI Crossref
Library-based single-cell analysis of CAR signaling reveals drivers of in vivo persistence
Perez CR, Garmilla A, Nilsson A, ..., Lauffenburger DA, Birnbaum ME
Cell Systems 16 (5) 101260 [2025-05-00; online 2025-05-00]
Avlant Nilsson DDLS Fellow
PubMed DOI Crossref
Sex differences in DNMT3A-mutant clonal hematopoiesis and the effects of estrogen.
Stomper J, Niroula A, Belizaire R, ..., Bandaru TS, Ebert BL
Cell Reports 44 (4) 115494 [2025-04-22; online 2025-04-02]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Omics Approach for Personalised Prevention of Type 2 Diabetes Mellitus for African and European Populations (OPTIMA): a protocol paper.
Goedecke JH, Danquah I, Abidha CA, ..., Landberg R, Olsson T
BMJ Open 15 (4) e099108 [2025-04-22; online 2025-04-22]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Putting cancer immunotherapy into spatial context in the clinic.
Engblom C, Lundeberg J
Nat. Biotechnol. 43 (4) 471-476 [2025-04-00; online 2025-04-15]
Camilla Engblom SciLifeLab Fellow
DOI Crossref
Occurrence and spread of carbapenemase‐producing Enterobacterales (CPE) in the food chain in the EU/EFTA. Part 1: 2025 update
Allende A, Álvarez‐Ordóñez A, Bortolaia V, ..., Rabbås H, Peixe L
EFSA J 23 (4) - [2025-04-00; online 2025-04-00]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Seal milk oligosaccharides rival human milk complexity and exhibit functional dynamics during lactation
Jin C, Lundstrøm J, Cori CR, ..., Khoo KH, Bojar D
- - (-) - [2025-03-20; online 2025-03-20]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Early gonadotoxic effects of cyclophosphamide on the prepubertal testis and the feasibility of reducing toxicity through combined antioxidant therapy
Eskafinoghani A, Reyes Palomares A, Hao X, ..., Lundberg A, Rodriguez-Walberg KA
- - (-) - [2025-03-19; online 2025-03-19]
Arian Lundberg DDLS Fellow
DOI Crossref
Predicting allergy and postpartum depression from an incomplete compositional microbiome
Shternshis A, Tong B, Skalkidou A, ..., Hugerth LW, Singh P
- - (-) - [2025-03-06; online 2025-03-06]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Androgen Receptor Inhibition Increases MHC Class I Expression and Improves Immune Response in Prostate Cancer.
Chesner LN, Polesso F, Graff JN, ..., Feng FY, Moran AE
Cancer Discov 15 (3) 481-494 [2025-03-03; online 2024-12-09]
Arian Lundberg DDLS Fellow
PubMed DOI Crossref
Recent advances in precision nutrition and cardiometabolic diseases.
Martínez-González MA, Planes FJ, Ruiz-Canela M, ..., Razquin C, Hu FB
Rev Esp Cardiol (Engl Ed) 78 (3) 263-271 [2025-03-00; online 2024-09-30]
Clemens Wittenbecher DDLS Fellow
PubMed DOI Crossref
Click Chemistry-Based Bioconjugation of Iron Oxide Nanoparticles.
Asad S, Ahl D, Suárez-López YDC, ..., Phillipson M, Teleki A
Small 21 (11) e2407883 [2025-03-00; online 2025-02-09]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Applying 3D cultures and high-throughput technologies to study host-pathogen interactions.
De Martinis ECP, Alves VF, Pereira MG, ..., Dannborg M, Bengtsson-Palme J
Front Immunol 16 (-) 1488699 [2025-02-20; online 2025-02-20]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Genetic adaptation to amoxicillin in Escherichia coli: The limited role of dinB and katE.
Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B
PLoS ONE 20 (2) e0312223 [2025-02-19; online 2025-02-19]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
Larralde M, Zeller G, Carroll LM
- - (-) - [2025-02-17; online 2025-02-17]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Towards an interpretable deep learning model of cancer.
Nilsson A, Meimetis N, Lauffenburger DA
NPJ Precis Oncol 9 (1) 46 [2025-02-14; online 2025-02-14]
Avlant Nilsson DDLS Fellow
PubMed DOI Crossref
Rapid Evolution of Host Repertoire and Geographic Range in a Young and Diverse Genus of Montane Butterflies.
Mo S, Zhu Y, Braga MP, ..., Zhang P, Wang H
Syst. Biol. 74 (1) 141-157 [2025-02-10; online 2024-11-01]
DDLS Fellow Mariana Pires Braga
DOI Crossref
The business case for investing in biodiversity data
Hasan F, Nyström J, Andersson C, ..., Johansson V, Andermann T
- - (-) - [2025-02-04; online 2025-02-04]
DDLS Fellow Tobias Andermann
PubMed DOI Crossref
Ceftazidime-avibactam tolerance and persistence among difficult-to-treat KPC-producing Klebsiella pneumoniae clinical isolates from bloodstream infections.
Abichabki N, Gaspar GG, Bortolato LR, ..., Darini ALC, Andrade LN
Eur. J. Clin. Microbiol. Infect. Dis. 44 (2) 343-353 [2025-02-00; online 2024-11-30]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Adaptation of Escherichia coli to ciprofloxacin and enrofloxacin: Differential proteomics of the SOS response and RecA-independent mechanisms.
Teichmann L, Pasman R, Luitwieler S, ..., Bengtsson-Palme J, Ter Kuile B
Int. J. Antimicrob. Agents 65 (2) 107420 [2025-02-00; online 2024-12-30]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Probing the Hidden Photoisomerization of a Symmetric Phosphaalkene Switch
Deka R, Steen JD, Hilbers MF, ..., Orthaber A, Crespi S
Angewandte Chemie 137 (5) - [2025-01-27; online 2024-12-13]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
Telomemore enables single-cell analysis of cell cycle and chromatin condensation.
Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J
Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Emotion regulation-based internet-delivered cognitive behavioural therapy for premenstrual dysphoric disorder: study protocol for a randomised controlled trial in Sweden.
Hoppe JM, Weise C, Kleinstaeuber M, ..., Andersson G, Buhrman M
BMJ Open 15 (1) e091649 [2025-01-22; online 2025-01-22]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Fluoroquinolone-specific resistance trajectories in E. coli and their dependence on the SOS-response.
Teichmann L, Luitwieler S, Bengtsson-Palme J, Ter Kuile B
BMC Microbiol. 25 (1) 37 [2025-01-21; online 2025-01-21]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.
Meimetis N, Lauffenburger DA, Nilsson A
STAR Protoc 6 (1) 103573 [2025-01-16; online 2025-01-16]
Avlant Nilsson DDLS Fellow
PubMed DOI Crossref
Liquid crystal nanoparticles for oral combination antibiotic therapies: A strategy towards protecting commensal gut bacteria during treatment.
He X, Karlsson PA, Xiong R, ..., Bergström CAS, Hubert M
J Colloid Interface Sci 678 (Pt B) 287-300 [2025-01-15; online 2024-08-31]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study.
Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E
Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 [2025-01-10; online 2024-10-23]
Erika Comasco SciLifeLab Fellow
DOI Crossref
DTPPI: predicting drug interactions using a weighted drug-protein network
Szydlik S, Taheri G
- - (-) - [2025-01-08; online 2025-01-08]
DDLS Fellow Golnaz Taheri
PubMed DOI Crossref
Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females.
Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E
Front Neuroendocrinol 76 (-) 101160 [2025-01-00; online 2024-11-06]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Unveiling Driver Modules in Lung Cancer: A Clustering-Based Gene-Gene Interaction Network Analysis
Taheri G, Szalai M, Habibi M, Papapetrou P
- - (-) 41-58 [2025-00-00; online 2025-01-01]
DDLS Fellow Golnaz Taheri
DOI Crossref
The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape
Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T
- - (-) - [2025-00-00; online 2025-00-00]
DDLS Fellow Tobias Andermann
DOI Crossref
Strategies for taxonomic and functional annotation of metagenomes
Abramova A, Bengtsson-Palme J
- - (-) 57-81 [2025-00-00; online 2025-00-00]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
Menstrual cycle-related changes in the human brain
Pletzer B, Comasco E, Hidalgo-Lopez E, ..., Sundström-Poromaa I, Derntl B
- - (-) 604-623 [2025-00-00; online 2024-02-12]
Erika Comasco SciLifeLab Fellow
DOI Crossref
Limited Effects of Tetracycline and Ciprofloxacin on Soil Bacterial Communities
Wenne M, Abramova A, Bengtsson-Palme J
- - (-) - [2025-00-00; online 2025-00-00]
DDLS Fellow Johan Bengtsson-Palme
SciLifeLab Data Centre
Publications 9.5.1