Erdem C

Mechanistic modeling of cell viability assays with in silico lineage tracing.

Mutsuddy A, Huggins JR, Amrit A, ..., Calhoun JC, Birtwistle MR

bioRxiv - (-) - [2024-08-26; online 2024-08-26]

Cemal Erdem DDLS Fellow

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms.

Erdem C, Gross SM, Heiser LM, Birtwistle MR

Nat Commun 14 (1) 3991 [2023-07-06; online 2023-07-06]

Cemal Erdem DDLS Fellow

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.

Mutsuddy A, Erdem C, Huggins JR, ..., Feltus FA, Birtwistle MR

Bioinform Adv 3 (1) vbad039 [2023-03-23; online 2023-03-23]

Cemal Erdem DDLS Fellow

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.

Gross SM, Dane MA, Smith RL, ..., Gray JW, Heiser LM

Commun Biol 5 (1) 1066 [2022-10-07; online 2022-10-07]

Cemal Erdem DDLS Fellow

Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates.

Zadeh CO, Huggins JR, Sarmah D, ..., Erdem C, Birtwistle MR

ACS Omega 7 (33) 28912-28923 [2022-08-23; online 2022-08-11]

Cemal Erdem DDLS Fellow

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling.

Erdem C, Mutsuddy A, Bensman EM, ..., Feltus FA, Birtwistle MR

Nat Commun 13 (1) 3555 [2022-06-21; online 2022-06-21]

Cemal Erdem DDLS Fellow

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells.

Erdem C, Lee AV, Taylor DL, Lezon TR

PLoS Comput Biol 17 (6) e1009125 [2021-06-00; online 2021-06-30]

Cemal Erdem DDLS Fellow