Tobias Andermann

The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape

Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T

- - (-) - [2025-00-00; online 2025-00-00]

Year 2024

The last of their kind: Is the genus Scutiger (Anura: Megophryidae) a relict element of the paleo-Transhimalaya biota?

Hofmann S, Podsiadlowski L, Andermann T, ..., Jablonski D, Schmidt J

Mol. Phylogenet. Evol. 201 (-) 108166 [2024-12-00; online 2024-08-09]

A Phylogenomic Analysis of Genipa (Rubiaceae) Using Target Sequence Capture Data

Ridley R, Persson C, Oxelman B, Andermann T, Bacon CD

Systematic Botany 49 (3) 617-625 [2024-11-19; online 2024-11-19]

Properties and limitations of eDNA substrates for terrestrial animal monitoring

Zhao B, Andermann T

- - (-) - [2024-10-10; online 2024-10-10]

Deep learning segmentation model produces accurate biodiversity predictions at 10 m spatial resolution

Andermann T, Häggmark J, Olsson P, Högström A

- - (-) - [2024-09-05; online 2024-09-05]

Exploring Paleogene Tibet's warm temperate environments through target enrichment and phylogenetic niche modelling of Himalayan spiny frogs (Paini, Dicroglossidae).

Hofmann S, Rödder D, Andermann T, ..., Schmidt J, Podsiadlowski L

Mol. Ecol. 33 (15) e17446 [2024-08-00; online 2024-07-01]

Year 2023

Undiscovered bird extinctions obscure the true magnitude of human-driven extinction waves.

Cooke R, Sayol F, Andermann T, ..., Antonelli A, Faurby S

Nat Commun 14 (1) 8116 [2023-12-19; online 2023-12-19]

Year 2022

Madagascar's extraordinary biodiversity: Threats and opportunities.

Ralimanana H, Perrigo AL, Smith RJ, ..., Zizka A, Antonelli A

Science (New York, N.Y.) 378 (6623) eadf1466 [2022-12-02; online 2022-12-02]

Madagascar's extraordinary biodiversity: Evolution, distribution, and use.

Antonelli A, Smith RJ, Perrigo AL, ..., Zizka A, Ralimanana H

Science (New York, N.Y.) 378 (6623) eabf0869 [2022-12-02; online 2022-12-02]

The origin and evolution of open habitats in North America inferred by Bayesian deep learning models.

Andermann T, Strömberg CAE, Antonelli A, Silvestro D

Nat Commun 13 (1) 4833 [2022-08-17; online 2022-08-17]

Recent and local diversification of Central American understorey palms

Cano Á, Stauffer FW, Andermann T, ..., Perret M, Antonelli A

Global Ecol. Biogeogr. 31 (8) 1513-1525 [2022-08-00; online 2022-05-11]

Global Estimation and Mapping of the Conservation Status of Tree Species Using Artificial Intelligence.

Silva SV, Andermann T, Zizka A, Kozlowski G, Silvestro D

Front Plant Sci 13 (-) 839792 [2022-04-29; online 2022-04-29]

Estimating Alpha, Beta, and Gamma Diversity Through Deep Learning.

Andermann T, Antonelli A, Barrett RL, Silvestro D

Front Plant Sci 13 (-) 839407 [2022-04-19; online 2022-04-19]

Target sequence capture of Barnadesioideae (Compositae) demonstrates the utility of low coverage loci in phylogenomic analyses.

Ferreira PL, Batista R, Andermann T, ..., Bacon CD, Antonelli A

Mol. Phylogenet. Evol. 169 (-) 107432 [2022-04-00; online 2022-02-04]

IUCNN – Deep learning approaches to approximate species' extinction risk

Zizka A, Andermann T, Silvestro D

Diversity and Distributions 28 (2) 227-241 [2022-02-00; online 2021-12-16]

Year 2021

A bioinformatic platform to integrate target capture and whole genome sequences of various read depths for phylogenomics.

G Ribeiro P, Torres Jiménez MF, Andermann T, ..., Bacon CD, Matos-Maraví P

Mol. Ecol. 30 (23) 6021-6035 [2021-12-00; online 2021-10-31]

Genomic and niche divergence in an Amazonian palm species complex

Bacon CD, Roncal J, Andermann T, ..., Tunarosa N, Antonelli A

- 197 (4) 498-512 [2021-11-29; online 2021-05-10]

Phylogenomics of the tropical plant family Ochnaceae using targeted enrichment of nuclear genes and 250+ taxa

Schneider JV, Jungcurt T, Cardoso D, ..., Berberich T, Zizka G

TAXON 70 (1) 48-71 [2021-02-00; online 2020-12-31]

<i>iucn_sim</i> : a new program to simulate future extinctions based on IUCN threat status

Andermann T, Faurby S, Cooke R, Silvestro D, Antonelli A

Ecography 44 (2) 162-176 [2021-02-00; online 2020-11-10]

Year 2020

The past and future human impact on mammalian diversity.

Andermann T, Faurby S, Turvey ST, Antonelli A, Silvestro D

Sci Adv 6 (36) - [2020-09-00; online 2020-09-04]

A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project.

Andermann T, Torres Jiménez MF, Matos-Maraví P, ..., Bacon CD, Antonelli A

Front Genet 10 (-) 1407 [2020-02-21; online 2020-02-21]

Phylogenomics and biogeography of the world's thrushes (Aves, Turdus): new evidence for a more parsimonious evolutionary history.

Batista R, Olsson U, Andermann T, ..., Ribas CC, Antonelli A

Proc. Biol. Sci. 287 (1919) 20192400 [2020-01-29; online 2020-01-22]

Year 2019

CoordinateCleaner: Standardized cleaning of occurrence records from biological collection databases

Zizka A, Silvestro D, Andermann T, ..., Zizka V, Antonelli A

Methods Ecol Evol 10 (5) 744-751 [2019-05-00; online 2019-02-24]

Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements.

Andermann T, Fernandes AM, Olsson U, ..., Faircloth BC, Antonelli A

Syst. Biol. 68 (1) 32-46 [2019-01-01; online 2018-05-18]

Year 2018

Conceptual and empirical advances in Neotropical biodiversity research.

Antonelli A, Ariza M, Albert J, ..., Zizka A, Edwards SV

PeerJ 6 (-) e5644 [2018-10-04; online 2018-10-04]

SECAPR-a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments.

Andermann T, Cano Á, Zizka A, Bacon C, Antonelli A

PeerJ 6 (-) e5175 [2018-07-13; online 2018-07-13]

Estimating Age-Dependent Extinction: Contrasting Evidence from Fossils and Phylogenies.

Hagen O, Andermann T, Quental TB, Antonelli A, Silvestro D

Syst. Biol. 67 (3) 458-474 [2018-05-01; online 2017-10-27]

Year 2016

An introduction to plant phylogenomics with a focus on palms

Barrett CF, Bacon CD, Antonelli A, Cano Á, Hofmann T

Bot. J. Linn. Soc. 182 (2) 234-255 [2016-10-00; online 2016-03-18]