Gomez-Cabrero D

Family name	Gomez-Cabrero
Given name	David
Initials	D
ORCID	ORCID 0000-0003-4186-3788
Affiliations

15 publications

PubMed DOI Crossref

Multimodal foundation transformer models for multiscale genomics.

Khan SA, Martínez-de-Morentin X, Alsabbagh AR, ..., Lehmann R, Tegner J

Nat. Methods 23 (2) 299-311 [2026-02-00; online 2025-12-01]

PubMed DOI Crossref

Characterization of the bone marrow architecture of multiple myeloma using spatial transcriptomics.

Muiños-Lopez E, Lopez-Perez AR, Sudupe L, ..., Gomez-Cabrero D, Prosper F

Commun Biol 8 (1) 1620 [2025-11-20; online 2025-11-20]

PubMed DOI Crossref

Uncovering the regulatory landscape of early human B cell lymphopoiesis and its implications in the pathogenesis of B-ALL.

Planell N, Martínez-de-Morentin X, Mouzo D, ..., Prosper F, Gomez-Cabrero D

Sci Adv 11 (41) eadw3110 [2025-10-10; online 2025-10-10]

DOI Crossref

Fundamental Limits of Inferring Dynamical Gene Regulatory Models from Single-Cell Data

Balubaid A, Bernal Tamyo JP, Kumar R, ..., Kiani N, Tegner J

- - (-) - [2025-09-12; online 2025-09-12]

DOI Crossref

Data meets prior knowledge for interpretable mechanistic inference in biology

Gomez-Cabrero D, Tegnér JN

Nat Mach Intell 7 (7) 987-988 [2025-07-22; online 2025-07-22]

DOI Crossref

Charting the single cell transcriptional landscape governing visual imprinting

Lagani V, Chitadze L, Gonzalez Alvarez AC, ..., Gomez Cabrero D, Solomonia R

- - (-) - [2025-06-26; online 2025-06-26]

DOI Crossref

Single-cell profiling reveals a novel RAB13+ endothelial subpopulation and profibrotic mesenchymal cells in the aged human bone marrow

Cenzano I, Cócera M, Lopez-Perez AR, ..., Gomez-Cabrero D, Prosper F

- - (-) - [2025-01-29; online 2025-01-29]

PubMed DOI Crossref

Global compositional and functional states of the human gut microbiome in health and disease.

Lee S, Portlock T, Le Chatelier E, ..., Uhlen M, Shoaie S

Genome Res 34 (6) 967-978 [2024-07-23; online 2024-07-23]

Adil Mardinoglu Saeed Shoaie SciLifeLab Fellow

DOI Crossref

Stromal and Endothelial Transcriptional Changes during Progression from MGUS to Myeloma and after Treatment Response

Cenzano I, Cócera M, Larrayoz M, ..., Gomez-Cabrero D, Prosper F

- - (-) - [2024-04-25; online 2024-04-25]

DOI Crossref

Foundation Models Meet Imbalanced Single-Cell Data When Learning Cell Type Annotations

Alsabbagh AR, de Infante AMR, Gomez-Cabrero D, ..., Khan SA, Tegnér JN

- - (-) - [2023-10-27; online 2023-10-27]

DOI Crossref

LEP-AD: Language Embedding of Proteins and Attention to Drugs predicts drug target interactions

Daga A, Khan SA, Cabrero DG, ..., Kiani N, Tegner J

- - (-) - [2023-03-15; online 2023-03-15]

DOI Crossref

STATegra: Multi-omics data integration - A conceptual scheme and a bioinformatics pipeline

Planell N, Lagani V, Sebastian-Leon P, ..., Tegner J, Gomez-Cabrero D

- - (-) - [2020-11-20; online 2020-11-20]

PubMed DOI Crossref

Challenges in the Multivariate Analysis of Mass Cytometry Data: The Effect of Randomization.

Papoutsoglou G, Lagani V, Schmidt A, ..., Tegnér J, Tsamardinos I

Cytometry A 95 (11) 1178-1190 [2019-11-00; online 2019-11-06]

DOI Crossref

The ultra-sensitive Nodewalk technique identifies stochastic from virtual, population-based enhancer hubs regulating MYC in 3D: Implications for the fitness of cancer cells

Sumida N, Sifakis EG, Scholz BA, ..., Göndör A, Ohlsson R

- - (-) - [2018-03-27; online 2018-03-27]

PubMed DOI Crossref

A survey of best practices for RNA-seq data analysis.

Conesa A, Madrigal P, Tarazona S, ..., Zhang X, Mortazavi A

Genome Biol. 17 (-) 13 [2016-01-26; online 2016-01-26]