Laura Carroll

PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity

Larralde M, Zeller G, Carroll LM

- - (-) - [2025-02-17; online 2025-02-17]

Telomemore enables single-cell analysis of cell cycle and chromatin condensation.

Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J

Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]

Year 2024

Annotated genome sequences of Salmonella Haifa, Salmonella Bangkok, and Salmonella Reading, isolated from chicken meat in South Africa.

Mathole M, Carroll L, Khabo-Mmekoa C, Mabogoane N, Matle I

Microbiol Resour Announc 13 (11) e0028424 [2024-11-12; online 2024-10-09]

Assessment of the exposure to cytotoxic Bacillus cereus group genotypes through high-temperature, short-time milk consumption.

Su J, Chandross-Cohen T, Qian C, ..., Wiedmann M, Kovac J

J Dairy Sci 107 (10) 7631-7647 [2024-10-00; online 2024-06-06]

Bacillamide D produced by Bacillus cereus from the mouse intestinal bacterial collection (miBC) is a potent cytotoxin in vitro.

Hohmann M, Brunner V, Johannes W, ..., Janßen KP, Gulder TAM

Commun Biol 7 (1) 655 [2024-05-28; online 2024-05-28]

Comparison of the performance of multiple whole-genome sequence-based tools for the identification of Bacillus cereus sensu stricto biovar Thuringiensis.

Chung T, Salazar A, Harm G, ..., Carroll LM, Kovac J

Applied and environmental microbiology 90 (4) e0177823 [2024-04-17; online 2024-03-12]

Year 2023

A community-curated, global atlas ofBacillus cereus sensu latogenomes for epidemiological surveillance

Ramnath V, Larralde M, Menchik P, ..., Henriksson J, Carroll LM

- - (-) - [2023-12-21; online 2023-12-21]

Artificial intelligence for natural product drug discovery.

Mullowney MW, Duncan KR, Elsayed SS, ..., Robinson SL, Medema MH

Nat Rev Drug Discov 22 (11) 895-916 [2023-11-00; online 2023-09-11]

Genus-wide genomic characterization of Macrococcus: insights into evolution, population structure, and functional potential.

Carroll LM, Pierneef R, Mafuna T, Magwedere K, Matle I

Front Microbiol 14 (-) 1181376 [2023-07-20; online 2023-07-20]

A multidrug-resistant Salmonella enterica Typhimurium DT104 complex lineage circulating among humans and cattle in the USA lost the ability to produce pertussis-like toxin ArtAB.

Carroll LM, Piacenza N, Cheng RA, Wiedmann M, Guldimann C

Microb Genom 9 (7) - [2023-07-00; online 2023-07-04]

More than mcr: canonical plasmid- and transposon-encoded mobilized colistin resistance genes represent a subset of phosphoethanolamine transferases.

Gaballa A, Wiedmann M, Carroll LM

Front. Cell. Infect. Microbiol. 13 (-) 1060519 [2023-06-08; online 2023-06-08]

Year 2022

Salmonella enterica serovar Cerro displays a phylogenetic structure and genomic features consistent with virulence attenuation and adaptation to cattle.

Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA

Front Microbiol 13 (-) 1005215 [2022-11-30; online 2022-11-30]

Laboratory Misidentifications Resulting from Taxonomic Changes to Bacillus cereus Group Species, 2018-2022.

Carroll LM, Matle I, Kovac J, Cheng RA, Wiedmann M

Emerg Infect Dis 28 (9) 1877-1881 [2022-09-00; online 2022-08-24]

Strains Associated with Two 2020 Welder Anthrax Cases in the United States Belong to Separate Lineages within Bacillus cereus sensu lato.

Carroll LM, Marston CK, Kolton CB, ..., Weiner ZP, Kovac J

Pathogens 11 (8) - [2022-07-29; online 2022-07-29]

Biosynthetic potential of the global ocean microbiome.

Paoli L, Ruscheweyh HJ, Forneris CC, ..., Piel J, Sunagawa S

Nature 607 (7917) 111-118 [2022-07-00; online 2022-06-22]

Genomic Sequencing of Bacillus cereus Sensu Lato Strains Isolated from Meat and Poultry Products in South Africa Enables Inter- and Intranational Surveillance and Source Tracking.

Carroll LM, Pierneef R, Mathole A, Atanda A, Matle I

Microbiol Spectr 10 (3) e0070022 [2022-06-29; online 2022-04-27]

Associations between Listeria monocytogenes genomic characteristics and adhesion to polystyrene at 8 °C.

Mahoney DBJ, Falardeau J, Hingston P, ..., Jang SS, Wang S

Food Microbiol 102 (-) 103915 [2022-04-00; online 2021-09-23]

Year 2021

Monitoring the Microevolution of Salmonella enterica in Healthy Dairy Cattle Populations at the Individual Farm Level Using Whole-Genome Sequencing.

Carroll LM, Buehler AJ, Gaballa A, ..., Cheng RA, Wiedmann M

Front Microbiol 12 (-) 763669 [2021-10-18; online 2021-10-18]

Recent Evolution and Genomic Profile of Salmonella enterica Serovar Heidelberg Isolates from Poultry Flocks in Brazil.

Kipper D, Orsi RH, Carroll LM, ..., Wiedmann M, Lunge VR

Applied and environmental microbiology 87 (21) e0103621 [2021-10-14; online 2021-08-18]

Characterization of Basal Transcriptomes Identifies Potential Metabolic and Virulence-Associated Adaptations Among Diverse Nontyphoidal Salmonella enterica Serovars.

Cohn AR, Orsi RH, Carroll LM, ..., Wiedmann M, Cheng RA

Front Microbiol 12 (-) 730411 [2021-10-13; online 2021-10-13]

Genomic Characterization of Endemic and Ecdemic Non-typhoidal Salmonella enterica Lineages Circulating Among Animals and Animal Products in South Africa.

Carroll LM, Pierneef R, Mathole M, Matle I

Front Microbiol 12 (-) 748611 [2021-10-04; online 2021-10-04]

Accuratede novoidentification of biosynthetic gene clusters with GECCO

Carroll LM, Larralde M, Fleck JS, ..., Cappio E, Zeller G

- - (-) - [2021-05-04; online 2021-05-04]

Keeping up with the Bacillus cereus group: taxonomy through the genomics era and beyond.

Carroll LM, Cheng RA, Wiedmann M, Kovac J

Crit Rev Food Sci Nutr 62 (28) 7677-7702 [2021-05-03; online 2021-05-03]

Antibiotic Resistance in Shiga Toxigenic Escherichia coli Isolates from Surface Waters and Sediments in a Mixed Use Urban Agricultural Landscape.

Ma Y, Chen J, Fong K, ..., Delaquis P, Wang S

Antibiotics (Basel) 10 (3) - [2021-02-26; online 2021-02-26]

Year 2020

Genomic Characterization of Salmonella Minnesota Clonal Lineages Associated with Poultry Production in Brazil.

Kipper D, Carroll LM, Mascitti AK, ..., Ikuta N, Lunge VR

Animals (Basel) 10 (11) - [2020-11-05; online 2020-11-05]

Novel Effective Bacillus cereus Group Species "Bacillus clarus" Is Represented by Antibiotic-Producing Strain ATCC 21929 Isolated from Soil.

Méndez Acevedo M, Carroll LM, Mukherjee M, ..., Dudley EG, Kovac J

mSphere 5 (6) - [2020-11-04; online 2020-11-04]

No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods.

Carroll LM, Cheng RA, Kovac J

Front Microbiol 11 (-) 580691 [2020-09-22; online 2020-09-22]

Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State.

Carroll LM, Huisman JS, Wiedmann M

Sci Rep 10 (1) 14428 [2020-09-02; online 2020-09-02]

Cereulide Synthetase Acquisition and Loss Events within the Evolutionary History of Group III Bacillus cereus Sensu Lato Facilitate the Transition between Emetic and Diarrheal Foodborne Pathogens.

Carroll LM, Wiedmann M

MBio 11 (4) - [2020-08-25; online 2020-08-25]

Comparative genomics reveals different population structures associated with host and geographic origin in antimicrobial-resistant Salmonella enterica.

Liao J, Orsi RH, Carroll LM, Wiedmann M

Environ. Microbiol. 22 (7) 2811-2828 [2020-07-00; online 2020-04-27]

Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes.

Carroll LM, Wiedmann M, Kovac J

MBio 11 (1) - [2020-02-25; online 2020-02-25]

Paenibacillus odorifer, the Predominant Paenibacillus Species Isolated from Milk in the United States, Demonstrates Genetic and Phenotypic Conservation of Psychrotolerance but Clade-Associated Differences in Nitrogen Metabolic Pathways.

Beno SM, Cheng RA, Orsi RH, ..., Martin NH, Wiedmann M

mSphere 5 (1) - [2020-01-22; online 2020-01-22]

Year 2019

Serotype-specific evolutionary patterns of antimicrobial-resistant Salmonella enterica.

Liao J, Orsi RH, Carroll LM, ..., Zhang H, Wiedmann M

BMC Evol Biol BMC Evolutionary Biology 19 (1) 132 [2019-06-21; online 2019-06-21]

Assembly and Characterization of a Pathogen Strain Collection for Produce Safety Applications: Pre-growth Conditions Have a Larger Effect on Peroxyacetic Acid Tolerance Than Strain Diversity.

Harrand AS, Kovac J, Carroll LM, ..., Kent DJ, Wiedmann M

Front Microbiol 10 (-) 1223 [2019-05-31; online 2019-05-31]

Identification of Novel Mobilized Colistin Resistance Gene mcr-9 in a Multidrug-Resistant, Colistin-Susceptible Salmonella enterica Serotype Typhimurium Isolate.

Carroll LM, Gaballa A, Guldimann C, ..., Henderson LO, Wiedmann M

MBio 10 (3) - [2019-05-07; online 2019-05-07]

Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges.

Carroll LM, Wiedmann M, Mukherjee M, ..., Cole JA, Kovac J

Front Microbiol 10 (-) 144 [2019-02-12; online 2019-02-12]

Next-Generation Sequencing

Wiedmann M, Carroll LM

- - (-) 376-383 [2019-00-00; online 2019-00-00]

Year 2018

First report of an mcr-1-harboring Salmonella enterica subsp. enterica serotype 4,5,12:i:- strain isolated from blood of a patient in Switzerland.

Carroll LM, Zurfluh K, Jang H, ..., Stephan R, Guldimann C

Int. J. Antimicrob. Agents 52 (5) 740-741 [2018-11-00; online 2018-08-10]

Impacts of feeding preweaned calves milk containing drug residues on the functional profile of the fecal microbiota.

Pereira RVV, Carroll LM, Lima S, ..., Bicalho RC, Warnick LD

Sci Rep 8 (1) 554 [2018-01-11; online 2018-01-11]

Year 2017

Precision food safety: A systems approach to food safety facilitated by genomics tools

Kovac J, Bakker Hd, Carroll LM, Wiedmann M

TrAC Trends in Analytical Chemistry 96 (-) 52-61 [2017-11-00; online 2017-11-00]

Rapid, High-Throughput Identification of Anthrax-Causing and Emetic Bacillus cereus Group Genome Assemblies via BTyper, a Computational Tool for Virulence-Based Classification of Bacillus cereus Group Isolates by Using Nucleotide Sequencing Data.

Carroll LM, Kovac J, Miller RA, Wiedmann M

Applied and environmental microbiology 83 (17) - [2017-09-01; online 2017-08-17]

Whole-Genome Sequencing of Drug-Resistant Salmonella enterica Isolates from Dairy Cattle and Humans in New York and Washington States Reveals Source and Geographic Associations.

Carroll LM, Wiedmann M, den Bakker H, ..., Warnick LD, Pereira RV

Applied and environmental microbiology 83 (12) - [2017-06-15; online 2017-05-31]

Temporal Genomic Phylogeny Reconstruction Indicates a Geospatial Transmission Path of Salmonella Cerro in the United States and a Clade-Specific Loss of Hydrogen Sulfide Production.

Kovac J, Cummings KJ, Rodriguez-Rivera LD, ..., Thachil A, Wiedmann M

Front Microbiol 8 (-) 737 [2017-05-01; online 2017-05-01]

Year 2016

Bacillus wiedmannii sp. nov., a psychrotolerant and cytotoxic Bacillus cereus group species isolated from dairy foods and dairy environments.

Miller RA, Beno SM, Kent DJ, ..., Boor KJ, Kovac J

Int. J. Syst. Evol. Microbiol. 66 (11) 4744-4753 [2016-11-00; online 2016-08-12]

Production of hemolysin BL by Bacillus cereus group isolates of dairy origin is associated with whole-genome phylogenetic clade.

Kovac J, Miller RA, Carroll LM, ..., Beno SM, Wiedmann M

BMC Genomics 17 (-) 581 [2016-08-09; online 2016-08-09]

Application of a Nonlinear Model to Transcript Levels of Upregulated Stress Response Gene ibpA in Stationary-Phase Salmonella enterica Subjected to Sublethal Heat Stress.

Carroll LM, Bergholz TM, Hildebrandt IM, Marks BP

J Food Prot 79 (7) 1089-1096 [2016-07-00; online 2016-07-01]