Cemal Erdem (10 publications)

Primary: Shown in the list of current labels.

Year 2024

PubMed DOI Crossref

Mechanistic modeling of cell viability assays with in silico lineage tracing.

Mutsuddy A, Huggins JR, Amrit A, ..., Calhoun JC, Birtwistle MR

bioRxiv - (-) - [2024-08-26; online 2024-08-26]

Cemal Erdem DDLS Fellow

Year 2023

PubMed DOI Crossref

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms.

Erdem C, Gross SM, Heiser LM, Birtwistle MR

Nat Commun 14 (1) 3991 [2023-07-06; online 2023-07-06]

Cemal Erdem DDLS Fellow

PubMed DOI Crossref

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.

Mutsuddy A, Erdem C, Huggins JR, ..., Feltus FA, Birtwistle MR

Bioinform Adv 3 (1) vbad039 [2023-03-23; online 2023-03-23]

Cemal Erdem DDLS Fellow

DOI Crossref

MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets

Erdem C, Birtwistle MR

Front. Syst. Biol. 3 (-) - [2023-03-09; online 2023-03-09]

Cemal Erdem DDLS Fellow

Year 2022

PubMed DOI Crossref

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.

Gross SM, Dane MA, Smith RL, ..., Gray JW, Heiser LM

Commun Biol 5 (1) 1066 [2022-10-07; online 2022-10-07]

Cemal Erdem DDLS Fellow

PubMed DOI Crossref

Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates.

Zadeh CO, Huggins JR, Sarmah D, ..., Erdem C, Birtwistle MR

ACS Omega 7 (33) 28912-28923 [2022-08-23; online 2022-08-11]

Cemal Erdem DDLS Fellow

PubMed DOI Crossref

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling.

Erdem C, Mutsuddy A, Bensman EM, ..., Feltus FA, Birtwistle MR

Nat Commun 13 (1) 3555 [2022-06-21; online 2022-06-21]

Cemal Erdem DDLS Fellow

Year 2021

PubMed DOI Crossref

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells.

Erdem C, Lee AV, Taylor DL, Lezon TR

PLoS Comput Biol 17 (6) e1009125 [2021-06-00; online 2021-06-30]

Cemal Erdem DDLS Fellow

Year 2016

PubMed DOI Crossref

Proteomic Screening and Lasso Regression Reveal Differential Signaling in Insulin and Insulin-like Growth Factor I (IGF1) Pathways.

Erdem C, Nagle AM, Casa AJ, ..., Lee AV, Lezon TR

Mol. Cell Proteomics 15 (9) 3045-3057 [2016-09-00; online 2016-06-30]

Cemal Erdem DDLS Fellow

Year 2015

DOI Crossref

MATHEMATICAL MODELING OF BEHÇET'S DISEASE: A DYNAMICAL SYSTEMS APPROACH

ERDEM C, BOZKURT Y, ERMAN B, GÜL A, DEMIR A

J. Biol. Syst. 23 (02) 231-257 [2015-06-00; online 2015-05-28]

Cemal Erdem DDLS Fellow