van der Valk T

Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring.

López Clinton S, Iwaszkiewicz-Eggebrecht E, Miraldo A, ..., Ronquist F, van der Valk T

Ecol Evol 15 (9) e72163 [2025-09-00; online 2025-09-16]

Genomic and morphological analysis reveals long-term mammoth hybridization in British Columbia, Canada.

Dehasque M, van der Valk T, Chacón-Duque JC, ..., Lister A, Dalén L

Biol. Lett. 21 (9) 20250305 [2025-09-00; online 2025-09-24]

The Impact of Reference Genome Divergence on Ancient DNA Damage Detection in Metagenomic Contexts

Guinet B, Sharif BM, van der Valk T

- - (-) - [2025-07-20; online 2025-07-20]

Disinfecting eukaryotic reference genomes to improve taxonomic inference from ancient environmental metagenomic data

Oskolkov N, Jin C, Clinton SL, ..., Heintzman PD, van der Valk T

- - (-) - [2025-03-19; online 2025-03-19]

Improving taxonomic inference from ancient environmental metagenomes by masking microbial-like regions in reference genomes.

Oskolkov N, Jin C, Clinton SL, ..., Heintzman PD, van der Valk T

Gigascience 14 (-) - [2025-01-06; online 2025-10-03]

Unravelling reference bias in ancient DNA datasets.

Dolenz S, van der Valk T, Jin C, ..., Dalén L, Heintzman PD

Bioinformatics 40 (7) - [2024-07-01; online 2024-07-04]

aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow.

Pochon Z, Bergfeldt N, Kırdök E, ..., Unneberg P, Oskolkov N

Genome Biol. 24 (1) 242 [2023-10-23; online 2023-10-23]

Ghost admixture in eastern gorillas

Pawar H, Rymbekova A, Cuadros S, ..., Marques-Bonet T, Kuhlwilm M

- - (-) - [2022-12-19; online 2022-12-19]

Genomic trajectories of a near-extinction event in the Chatham Island black robin.

von Seth J, van der Valk T, Lord E, ..., Robertson BC, Dussex N

BMC Genomics 23 (1) 747 [2022-11-10; online 2022-11-10]

aMeta: an accurate and memory-efficient ancient Metagenomic profiling workflow

Pochon Z, Bergfeldt N, Kırdök E, ..., Unneberg P, Oskolkov N

- - (-) - [2022-10-05; online 2022-10-05]

Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations.

von Seth J, Dussex N, Díez-Del-Molino D, ..., Götherström A, Dalén L

Nat Commun 12 (1) 2393 [2021-04-26; online 2021-04-26]

Million-year-old DNA sheds light on the genomic history of mammoths.

van der Valk T, Pečnerová P, Díez-Del-Molino D, ..., Götherström A, Dalén L

Nature 591 (7849) 265-269 [2021-03-00; online 2021-02-17]

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies.

van der Valk T, Vezzi F, Ormestad M, Dalén L, Guschanski K

Mol Ecol Resour 20 (5) 1171-1181 [2020-09-00; online 2019-05-05]

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin.

Hooper R, Brealey JC, van der Valk T, ..., Foote AD, Guschanski K

Mol. Ecol. 28 (2) 484-502 [2019-01-00; online 2018-10-24]