Sonnhammer ELL

Family name	Sonnhammer
Given name	Erik L L
Initials	ELL
ORCID	ORCID 0000-0002-9015-5588
Affiliations	Department of Biochemistry and Biophysics, Stockholm University, Science for Life Laboratory, Box 1031, 17121, Solna, Sweden. erik.sonnhammer@scilifelab.se.

17 publications

PubMed DOI Crossref

BiGSM: Bayesian inference of gene regulatory network via sparse modelling.

Qin H, Garbulowski M, Sonnhammer ELL, Chatterjee S

Bioinformatics 41 (6) - [2025-06-02; online 2025-06-09]

PubMed DOI Crossref

Topology-based metrics for finding the optimal sparsity in gene regulatory network inference.

Lundqvist N, Garbulowski M, Hillerton T, Sonnhammer ELL

Bioinformatics 41 (5) - [2025-05-06; online 2025-03-24]

PubMed DOI Crossref

FunCoup 6: advancing functional association networks across species with directed links and improved user experience.

Buzzao D, Persson E, Guala D, Sonnhammer ELL

Nucleic Acids Res. 53 (D1) D658-D671 [2025-01-06; online 2024-11-13]

PubMed DOI Crossref

The FunCoup Cytoscape App: multi-species network analysis and visualization.

Buzzao D, Steininger L, Guala D, Sonnhammer ELL

Bioinformatics 41 (1) - [2024-12-26; online 2024-12-19]

PubMed DOI Crossref

New developments for the Quest for Orthologs benchmark service.

Altenhoff A, Nevers Y, Tran V, ..., Ebersberger I, Sonnhammer E

NAR Genomics and Bioinformatics 6 (4) lqae167 [2024-12-00; online 2024-12-11]

PubMed DOI Crossref

Quest for Orthologs in the Era of Biodiversity Genomics.

Langschied F, Bordin N, Cosentino S, ..., Dessimoz C, Ebersberger I

Genome Biol Evol 16 (10) - [2024-10-09; online 2024-10-15]

DOI Crossref

FunCoup 6: advancing functional association networks across species with directed links and improved user experience

Buzzao D, Persson E, Guala D, Sonnhammer ELL

- - (-) - [2024-09-18; online 2024-09-18]

DOI Crossref

Benchmarking enrichment analysis methods with the disease pathway network

Buzzao D, Castresana-Aguirre M, Guala D, Sonnhammer ELL

- - (-) - [2023-09-30; online 2023-09-30]

PubMed DOI Crossref

GRNbenchmark - a web server for benchmarking directed gene regulatory network inference methods.

Seçilmiş D, Hillerton T, Sonnhammer ELL

Nucleic Acids Res. 50 (W1) W398-W404 [2022-07-05; online 2022-05-25]

PubMed DOI Crossref

The Quest for Orthologs orthology benchmark service in 2022.

Nevers Y, Jones TEM, Jyothi D, ..., Dessimoz C, Altenhoff A

Nucleic Acids Res. 50 (W1) W623-W632 [2022-07-05; online 2022-05-14]

PubMed DOI Crossref

InParanoid-DIAMOND: faster orthology analysis with the InParanoid algorithm.

Persson E, Sonnhammer ELL

Bioinformatics 38 (10) 2918-2919 [2022-05-13; online 2022-05-14]

PubMed DOI Crossref

PathwAX II: network-based pathway analysis with interactive visualization of network crosstalk.

Ogris C, Castresana-Aguirre M, Sonnhammer ELL

Bioinformatics 38 (9) 2659-2660 [2022-04-28; online 2022-03-11]

PubMed DOI Crossref

Fast and accurate gene regulatory network inference by normalized least squares regression.

Hillerton T, Seçilmiş D, Nelander S, Sonnhammer ELL

Bioinformatics 38 (8) 2263-2268 [2022-04-12; online 2022-02-18]

PubMed DOI Crossref

DNA Methylation Levels in Mononuclear Leukocytes from the Mother and Her Child Are Associated with IgE Sensitization to Allergens in Early Life.

Acevedo N, Scala G, Merid SK, ..., Greco D, Scheynius A

Int J Mol Sci 22 (2) - [2021-01-14; online 2021-01-14]

DOI Crossref

Drug repurposing improves disease targeting 11-fold on average. New insights from network module targeting and its application to COVID-19.

Rivero I, Castresana M, Guala D, Sonnhammer E

- - (-) - [2020-11-13; online 2020-11-13]

PubMed DOI Crossref

Uncovering cancer gene regulation by accurate regulatory network inference from uninformative data.

Seçilmiş D, Hillerton T, Morgan D, ..., Nordling TEM, Sonnhammer ELL

NPJ Syst Biol Appl 6 (1) 37 [2020-11-09; online 2020-11-09]

DOI Crossref

Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms

Morgan D, Studham M, Tjärnberg A, ..., Nordling TEM, Sonnhammer ELL

- - (-) - [2019-08-15; online 2019-08-15]