Elofsson A

JSON
CSV
XLSX
TXT
Family name Elofsson
Given name Arne
Initials A
ORCID

ORCID 0000-0002-7115-9751
Affiliations Science for Life Laboratory, Department of Biochemistry and Biophysics, Stockholm University, 171 65 Solna, Sweden.

75 publications

PubMed DOI Crossref
Engaging the Community: CASP Special Interest Groups.
Elofsson A, Kretsch RC, Magnus M, Montelione GT
Proteins 94 (1) 432-434 [2026-01-00; online 2025-04-30]
PubMed DOI Crossref
AlphaFold3 at CASP16.
Elofsson A
Proteins 94 (1) 154-166 [2026-01-00; online 2025-08-25]
PubMed DOI Crossref
Blind Prediction of Complex Water and Ion Ensembles Around RNA in CASP16.
Kretsch RC, Posani E, Baulin EF, ..., Case DA, Das R
Proteins 94 (1) 381-402 [2026-01-00; online 2025-11-08]
PubMed DOI Crossref
Blind prediction of complex water and ion ensembles around RNA in CASP16.
Kretsch RC, Posani E, Baulin EF, ..., Case DA, Das R
bioRxiv - (-) - [2025-11-03; online 2025-11-03]
DOI Crossref
Evaluating Deep Learning Based Structure Prediction Methods on Antibody-Antigen Complexes
Fromm S, Ludaic M, Elofsson A
- - (-) - [2025-07-11; online 2025-07-11]
DOI Crossref
Limits of deep-learning-based RNA prediction methods
Ludaic M, Elofsson A
- - (-) - [2025-05-05; online 2025-05-05]
DOI Crossref
AlphaFold3 at CASP16
Elofsson A
- - (-) - [2025-04-16; online 2025-04-16]
PubMed DOI Crossref
MoLPC2: improved prediction of large protein complex structures and stoichiometry using Monte Carlo Tree Search and AlphaFold2.
Chim HY, Elofsson A
Bioinformatics 40 (6) - [2024-06-03; online 2024-05-23]
DOI Crossref
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
Elife 13 (-) - [2024-04-26; online 2024-04-26]
PubMed DOI Crossref
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse.
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
Elife 13 (-) - [2024-04-26; online 2024-04-26]
DOI Crossref
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
- - (-) - [2024-04-10; online 2024-04-10]
DOI Crossref
Author response: Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
- - (-) - [2024-04-10; online 2024-04-10]
DOI Crossref
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
- - (-) - [2024-01-04; online 2024-01-04]
PubMed DOI Crossref
M-Ionic: prediction of metal-ion-binding sites from sequence using residue embeddings.
Shenoy A, Kalakoti Y, Sundar D, Elofsson A
Bioinformatics 40 (1) - [2024-01-02; online 2024-01-04]
PubMed DOI Crossref
Peptide binder design with inverse folding and protein structure prediction.
Bryant P, Elofsson A
Commun Chem 6 (1) 229 [2023-10-25; online 2023-10-25]
PubMed DOI Crossref
The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems.
Ernits K, Saha CK, Brodiazhenko T, ..., Hauryliuk V, Atkinson GC
Proc. Natl. Acad. Sci. U.S.A. 120 (33) e2305393120 [2023-08-15; online 2023-08-09]
DOI Crossref
Deep learning insights into the architecture of the mammalian egg-sperm fusion synapse
Elofsson A, Han L, Bianchi E, Wright GJ, Jovine L
- - (-) - [2023-07-28; online 2023-07-28]
PubMed DOI Crossref
Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes.
Zhu W, Shenoy A, Kundrotas P, Elofsson A
Bioinformatics 39 (7) - [2023-07-01; online 2023-07-05]
PubMed DOI Crossref
Multiplexed selectivity screening of anti-GPCR antibodies.
Dahl L, Kotliar IB, Bendes A, ..., Sakmar TP, Schwenk JM
Sci Adv 9 (18) eadf9297 [2023-05-03; online 2023-05-03]
DOI Crossref
M-Ionic: Prediction of metal ion binding sites from sequence using residue embeddings
Shenoy A, Kalakoti Y, Sundar D, Elofsson A
- - (-) - [2023-04-06; online 2023-04-06]
DOI Crossref
The structural basis of hyperpromiscuity in a core combinatorial network of Type II toxin-antitoxin and related phage defence systems
Ernits K, Saha CK, Brodiazhenko T, ..., Hauryliuk V, Atkinson GC
- - (-) - [2023-03-22; online 2023-03-22]
PubMed DOI Crossref
AFTGAN: prediction of multi-type PPI based on attention free transformer and graph attention network.
Kang Y, Elofsson A, Jiang Y, ..., Yu M, Li Z
Bioinformatics 39 (2) - [2023-02-03; online 2023-01-25]
PubMed DOI Crossref
Towards a structurally resolved human protein interaction network.
Burke DF, Bryant P, Barrio-Hernandez I, ..., Beltrao P, Elofsson A
Nat. Struct. Mol. Biol. 30 (2) 216-225 [2023-02-00; online 2023-01-23]
PubMed DOI Crossref
A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1.
Saluri M, Leppert A, Gese GV, ..., Hällberg BM, Landreh M
PNAS Nexus 2 (2) pgac303 [2023-02-00; online 2023-01-06]
DOI Crossref
EvoBind: peptide binder design with inverse folding and protein structure prediction
Bryant P, Elofsson A
- - (-) - [2023-01-10; online 2023-01-10]
DOI Crossref
Evaluation of AlphaFold-Multimer prediction on multi-chain protein complexes
Zhu W, Shenoy A, Kundrotas P, Elofsson A
- - (-) - [2022-12-12; online 2022-12-12]
DOI Crossref
Multiplexed selectivity screening of anti-GPCR antibodies
Dahl L, Kotliar IB, Bendes A, ..., Sakmar TP, Schwenk JM
- - (-) - [2022-11-24; online 2022-11-24]
PubMed DOI Crossref
A structural biology community assessment of AlphaFold2 applications.
Akdel M, Pires DEV, Pardo EP, ..., Croll TI, Beltrao P
Nat. Struct. Mol. Biol. 29 (11) 1056-1067 [2022-11-00; online 2022-11-07]
PubMed DOI Crossref
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search.
Bryant P, Pozzati G, Zhu W, ..., Kundrotas P, Elofsson A
Nat Commun 13 (1) 6028 [2022-10-12; online 2022-10-12]
DOI Crossref
A “grappling hook” interaction balances self-assembly and chaperone activity of Nucleophosmin 1
Saluri M, Leppert A, Gese GV, ..., Hällberg BM, Landreh M
- - (-) - [2022-09-29; online 2022-09-29]
DOI Crossref
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search.
Elofsson A, Bryant P, Pozzati G, ..., Shenoy A, Kundrotas P
- - (-) - [2022-07-27; online 2022-07-27]
DOI Crossref
EvoBind: in silico directed evolution of peptide binders with AlphaFold
Bryant P, Elofsson A
- - (-) - [2022-07-23; online 2022-07-23]
PubMed DOI Crossref
Scoring of protein-protein docking models utilizing predicted interface residues.
Pozzati G, Kundrotas P, Elofsson A
Proteins 90 (7) 1493-1505 [2022-07-00; online 2022-03-14]
PubMed DOI Crossref
Author Correction: Improved prediction of protein-protein interactions using AlphaFold2.
Bryant P, Pozzati G, Elofsson A
Nat Commun 13 (1) 1694 [2022-03-24; online 2022-03-24]
DOI Crossref
Complementing machine learning-based structure predictions with native mass spectrometry
Allison TM, Degiacomi MT, Marklund EG, ..., Benesch JLP, Landreh M
- - (-) - [2022-03-19; online 2022-03-19]
DOI Crossref
Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search
Bryant P, Pozzati G, Zhu W, ..., Kundrotas P, Elofsson A
- - (-) - [2022-03-12; online 2022-03-12]
PubMed DOI Crossref
Improved prediction of protein-protein interactions using AlphaFold2.
Bryant P, Pozzati G, Elofsson A
Nat Commun 13 (1) 1265 [2022-03-10; online 2022-03-10]
PubMed DOI Crossref
The relationship between ageing and changes in the human blood and brain methylomes.
Bryant P, Elofsson A
NAR Genomics and Bioinformatics 4 (1) lqac001 [2022-03-00; online 2022-02-02]
PubMed DOI Crossref
Limits and potential of combined folding and docking.
Pozzati G, Zhu W, Bassot C, ..., Kundrotas P, Elofsson A
Bioinformatics 38 (4) 954-961 [2022-01-27; online 2021-11-18]
PubMed DOI Crossref
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation.
Quaglia F, Mészáros B, Salladini E, ..., Tosatto SCE, Piovesan D
Nucleic Acids Res. 50 (D1) D480-D487 [2022-01-07; online 2021-12-02]
DOI Crossref
Towards a structurally resolved human protein interaction network
Elofsson A, Burke D, Bryant P, ..., Kundrotas P, Beltrao P
- - (-) - [2021-12-16; online 2021-12-16]
PubMed DOI Crossref
Protein sequence-to-structure learning: Is this the end(-to-end revolution)?
Laine E, Eismann S, Elofsson A, Grudinin S
Proteins 89 (12) 1770-1786 [2021-12-00; online 2021-09-22]
DOI Crossref
Towards a structurally resolved human protein interaction network
Burke DF, Bryant P, Barrio-Hernandez I, ..., Beltrao P, Elofsson A
- - (-) - [2021-11-09; online 2021-11-09]
PubMed DOI Crossref
pyconsFold: a fast and easy tool for modeling and docking using distance predictions.
Lamb J, Elofsson A
Bioinformatics 37 (21) 3959-3960 [2021-11-05; online 2021-07-10]
DOI Crossref
A structural biology community assessment of AlphaFold 2 applications
Akdel M, Pires DEV, Porta Pardo E, ..., Croll TI, Beltrao P
- - (-) - [2021-09-26; online 2021-09-26]
DOI Crossref
Improved prediction of protein-protein interactions using AlphaFold2
Bryant P, Pozzati G, Elofsson A
- - (-) - [2021-09-15; online 2021-09-15]
DOI Crossref
Improved protein docking by predicted interface residues
Pozzati G, Kundrotas P, Elofsson A
- - (-) - [2021-08-26; online 2021-08-26]
PubMed DOI Crossref
The evolutionary history of topological variations in the CPA/AT transporters.
Sudha G, Bassot C, Lamb J, ..., Huang Y, Elofsson A
PLoS Comput Biol 17 (8) e1009278 [2021-08-00; online 2021-08-17]
DOI Crossref
Limits and potential of combined folding and docking using PconsDock
Pozzati G, Zhu W, Bassot C, ..., Kundrotas P, Elofsson A
- - (-) - [2021-06-07; online 2021-06-07]
PubMed DOI Crossref
GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction.
Li Z, Jiang K, Qin S, Zhong Y, Elofsson A
PLoS Comput Biol 17 (6) e1009048 [2021-06-00; online 2021-06-03]
PubMed DOI Crossref
Accurate contact-based modelling of repeat proteins predicts the structure of new repeats protein families.
Bassot C, Elofsson A
PLoS Comput Biol 17 (4) e1008798 [2021-04-00; online 2021-04-15]
DOI Crossref
Intra-helical salt bridge contribution to membrane protein insertion
Duart G, Lamb J, Ortiz-Mateu J, Elofsson A, Mingarro I
- - (-) - [2021-02-25; online 2021-02-25]
DOI Crossref
pyconsFold: A fast and easy tool for modelling and docking using distance predictions
Lamb J, Elofsson A
- - (-) - [2021-02-09; online 2021-02-09]
DOI Crossref
The relationship between ageing and changes in the human blood and brain methylomes
Bryant P, Elofsson A
- - (-) - [2021-01-27; online 2021-01-27]
DOI Crossref
The evolutionary history of topological variations in the CPA/AT superfamily
Govindarajan S, Bassot C, Lamb J, ..., Huang Y, Elofsson A
- - (-) - [2020-12-15; online 2020-12-15]
DOI Crossref
Identification of a novel fold type in CPA/AT transporters by ab-initio structure prediction
Bassot C, Govindarajan S, Lamb J, Elofsson A
- - (-) - [2020-11-05; online 2020-11-05]
DOI Crossref
Modelling the dispersion of SARS-CoV-2 on a dynamic network graph
Bryant P, Elofsson A
- - (-) - [2020-10-21; online 2020-10-21]
DOI Crossref
The limits of estimating COVID-19 intervention effects using Bayesian models
Bryant P, Elofsson A
- - (-) - [2020-08-16; online 2020-08-16]
PubMed DOI Crossref
Using Micro- and Macro-Level Network Metrics Unveils Top Communicative Gene Modules in Psoriasis.
Naderi R, Saadati Mollaei H, Elofsson A, Hosseini Ashtiani S
Genes (Basel) 11 (8) - [2020-08-10; online 2020-08-10]
DOI Crossref
The effect of opening up the US on COVID-19 spread
Bryant P, Elofsson A
- - (-) - [2020-07-04; online 2020-07-04]
PubMed DOI Crossref
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community).
Orengo C, Velankar S, Wodak S, ..., Salminen T, Schneider B
F1000Res 9 (-) - [2020-04-22; online 2020-04-22]
PubMed DOI Crossref
A New Census of Protein Tandem Repeats and Their Relationship with Intrinsic Disorder.
Delucchi M, Schaper E, Sachenkova O, Elofsson A, Anisimova M
Genes (Basel) 11 (4) - [2020-04-09; online 2020-04-09]
DOI Crossref
The Use of GC-, Codon-, and Amino Acid-frequencies to Understand the Evolutionary Forces at a Genomic Scale
Elofsson A
- - (-) - [2019-12-03; online 2019-12-03]
PubMed DOI Crossref
Estimation of model accuracy in CASP13.
Cheng J, Choe MH, Elofsson A, ..., Venclovas Č, Wallner B
Proteins 87 (12) 1361-1377 [2019-12-00; online 2019-07-16]
DOI Crossref
Accurate contact-based modelling of repeat proteins predicts the structure of Curlin and SPW repeats
Bassot C, Elofsson A
- - (-) - [2019-10-17; online 2019-10-17]
PubMed DOI Crossref
An intrinsically disordered proteins community for ELIXIR.
Davey NE, Babu MM, Blackledge M, ..., Wichapong K, Tosatto SCE
F1000Res 8 (-) - [2019-10-15; online 2019-10-15]
PubMed DOI Crossref
Detecting sequence signals in targeting peptides using deep learning.
Almagro Armenteros JJ, Salvatore M, Emanuelsson O, ..., Elofsson A, Nielsen H
Life Sci. Alliance 2 (5) - [2019-10-00; online 2019-09-30]
PubMed DOI Crossref
Why do eukaryotic proteins contain more intrinsically disordered regions?
Basile W, Salvatore M, Bassot C, Elofsson A
PLoS Comput Biol 15 (7) e1007186 [2019-07-00; online 2019-07-22]
DOI Crossref
Detecting Novel Sequence Signals in Targeting Peptides Using Deep Learning
Almagro Armenteros JJ, Salvatore M, Emanuelsson O, ..., Elofsson A, Nielsen H
- - (-) - [2019-05-17; online 2019-05-17]
PubMed DOI Crossref
Ten simple rules on how to create open access and reproducible molecular simulations of biological systems.
Elofsson A, Hess B, Lindahl E, ..., van der Spoel D, Wallqvist A
PLoS Comput Biol 15 (1) e1006649 [2019-01-00; online 2019-01-17]
DOI Crossref
Why do eukaryotic proteins contain more intrinsically disordered regions?
Basile W, Salvatore M, Bassot C, Elofsson A
- - (-) - [2018-02-23; online 2018-02-23]
PubMed DOI Crossref
High GC content causes orphan proteins to be intrinsically disordered.
Basile W, Sachenkova O, Light S, Elofsson A
PLoS Comput Biol 13 (3) e1005375 [2017-03-00; online 2017-03-29]
Affiliated researcher
DOI Crossref
High GC Content Causes Orphan Proteins to be Intrinsically Disordered
Basile W, Sachenkova O, Light S, Elofsson A
- - (-) - [2017-01-27; online 2017-01-27]
DOI Crossref
Accurate contact predictions for thousands of protein families using PconsC3
Skwark MJ, Michel M, Menéndez Hurtado D, Ekeberg M, Elofsson A
- - (-) - [2016-10-07; online 2016-10-07]
PubMed DOI Crossref
All-atom 3D structure prediction of transmembrane β-barrel proteins from sequences.
Hayat S, Sander C, Marks DS, Elofsson A
Proc. Natl. Acad. Sci. U.S.A. 112 (17) 5413-5418 [2015-04-28; online 2015-04-09]
SciLifeLab Data Centre
Publications 9.5.1