Publications 2018

1143 publications

Estrogen receptor alpha controls gene expression via translational offsetting
Lorent J, Rebello RJ, Hoef Vv, ..., Larsson O, Furic L
- - (-) - [2018-12-28; online 2018-12-28]
Vascular Targeting to Increase the Efficiency of Immune Checkpoint Blockade in Cancer.
Georganaki M, van Hooren L, Dimberg A
Front Immunol 9 (-) 3081 [2018-12-21; online 2018-12-21]
Transcriptional output, cell types densities and normalization in spatial transcriptomics
Saiselet M, Rodrigues-Vitória J, Tourneur A, ..., Maenhaut C, Detours V
- - (-) - [2018-12-21; online 2018-12-21]
Refinement of Highly Flexible Protein Structures using Simulation‐Guided Spectroscopy
Hays JM, Kieber MK, Li JZ, ..., Columbus L, Kasson PM
Angewandte Chemie 130 (52) 17356-17360 [2018-12-21; online 2018-11-27]
Refinement of Highly Flexible Protein Structures using Simulation-Guided Spectroscopy.
Hays JM, Kieber MK, Li JZ, ..., Columbus L, Kasson PM
Angew. Chem. Int. Ed. Engl. 57 (52) 17110-17114 [2018-12-21; online 2018-11-27]
Detection of single nucleotide polymorphisms with padlock probes v1
Krzywkowski T, Nilsson M
- - (-) - [2018-12-20; online 2018-12-20]
Clinical and Genetic Determinants of Varicose Veins.
Fukaya E, Flores AM, Lindholm D, ..., Ingelsson E, Leeper NJ
Circulation 138 (25) 2869-2880 [2018-12-18; online 2018-12-20]
Author Correction: Bi-directional cell-pericellular matrix interactions direct stem cell fate.
Ferreira SA, Motwani MS, Faull PA, ..., Bozec L, Gentleman E
Nat Commun 9 (1) 5419 [2018-12-18; online 2018-12-18]
Genome size evolution in the Archaea.
Kellner S, Spang A, Offre P, ..., Petitjean C, Williams TA
Emerg Top Life Sci 2 (4) 595-605 [2018-12-14; online 2018-12-14]
Hundreds of Unrecognized Halogenated Contaminants Discovered in Polar Bear Serum.
Liu Y, Richardson ES, Derocher AE, ..., Cheng L, Martin JW
Angew. Chem. Int. Ed. Engl. 57 (50) 16401-16406 [2018-12-10; online 2018-11-15]
Hundreds of Unrecognized Halogenated Contaminants Discovered in Polar Bear Serum
Liu Y, Richardson ES, Derocher AE, ..., Cheng L, Martin JW
Angewandte Chemie 130 (50) 16639-16644 [2018-12-10; online 2018-11-15]
High serum levels of p,p'-DDE are associated with an accelerated decline in GFR during 10 years follow-up.
Jayasinghe S, Lind L, Salihovic S, Larsson A, Lind PM
Sci. Total Environ. 644 (-) 371-374 [2018-12-10; online 2018-07-05]
Integration of Transcriptomics and Antibody-Based Proteomics for Exploration of Proteins Expressed in Specialized Tissues.
Sjöstedt E, Sivertsson Å, Hikmet Noraddin F, ..., Uhlén M, Lindskog C
J. Proteome Res. 17 (12) 4127-4137 [2018-12-07; online 2018-10-16]
Expanding the Use of Spectral Libraries in Proteomics.
Deutsch EW, Perez-Riverol Y, Chalkley RJ, ..., Bandeira N, Röst H
J. Proteome Res. 17 (12) 4051-4060 [2018-12-07; online 2018-10-11]
Cotranslational Folding of a Pentarepeat β-Helix Protein.
Notari L, Martínez-Carranza M, Farías-Rico JA, Stenmark P, von Heijne G
J. Mol. Biol. 430 (24) 5196-5206 [2018-12-07; online 2018-10-27]
An archaeal symbiont-host association from the deep terrestrial subsurface
Schwank K, Bornemann TLV, Dombrowski N, ..., Banfield JF, Probst AJ
- - (-) - [2018-12-05; online 2018-12-05]
miRTrace reveals the organismal origins of microRNA sequencing data.
Kang W, Eldfjell Y, Fromm B, ..., Biryukova I, Friedländer MR
Genome Biol. 19 (1) 213 [2018-12-04; online 2018-12-04]
Marc Friedländer SciLifeLab Fellow
Fusidic Acid: A Neglected Risk Factor for Statin-Associated Myopathy.
Rönnqvist J, Hallberg P, Yue QY, Wadelius M
Clin Med Insights Cardiol 12 (-) 1179546818815162 [2018-12-04; online 2018-12-04]
Spatial chromosome folding and active transcription drive DNA fragility and formation of oncogenic MLL translocations
Gothe HJ, Bouwman BAM, Gusmao EG, ..., Crosetto N, Roukos V
- - (-) - [2018-12-03; online 2018-12-03]
Transcriptional and Epigenetic Changes Influencing Skeletal Muscle Metabolism in Women With Polycystic Ovary Syndrome.
Nilsson E, Benrick A, Kokosar M, ..., Ling C, Stener-Victorin E
J. Clin. Endocrinol. Metab. 103 (12) 4465-4477 [2018-12-01; online 2018-08-17]
Regulation of sex hormone receptors in sexual dimorphism of human cancers.
Zheng D, Williams C, Vold JA, ..., McLaughlin SA, Li Z
Cancer Lett. 438 (-) 24-31 [2018-12-01; online 2018-09-14]
Using Scipion for stream image processing at Cryo-EM facilities.
Gómez-Blanco J, de la Rosa-Trevín JM, Marabini R, ..., Conesa P, Carazo JM
J. Struct. Biol. 204 (3) 457-463 [2018-12-00; online 2018-10-05]
The structure of the tetanus toxin reveals pH-mediated domain dynamics
Masuyer G, Conrad J, Stenmark P
Toxicon 156 (-) S78 [2018-12-00; online 2018-12-00]
The adult human testis transcriptional cell atlas.
Guo J, Grow EJ, Mlcochova H, ..., Hotaling JM, Cairns BR
Cell Res. 28 (12) 1141-1157 [2018-12-00; online 2018-10-12]
Targeting PDGF-mediated recruitment of pericytes blocks vascular mimicry and tumor growth.
Thijssen VL, Paulis YW, Nowak-Sliwinska P, ..., Cao Y, Griffioen AW
J. Pathol. 246 (4) 447-458 [2018-12-00; online 2018-10-30]
Stereocilin gene variants associated with episodic vertigo: expansion of the DFNB16 phenotype.
Frykholm C, Klar J, Tomanovic T, Ameur A, Dahl N
Eur. J. Hum. Genet. 26 (12) 1871-1874 [2018-12-00; online 2018-09-24]
Soft-tissue evidence for homeothermy and crypsis in a Jurassic ichthyosaur.
Lindgren J, Sjövall P, Thiel V, ..., Ojika M, Schweitzer MH
Nature 564 (7736) 359-365 [2018-12-00; online 2018-12-05]
Padlock Probe Assay for Detection and Subtyping of Seasonal Influenza.
Neumann F, Hernández-Neuta I, Grabbe M, ..., Albert J, Nilsson M
Clin. Chem. 64 (12) 1704-1712 [2018-12-00; online 2018-09-26]
PO497 Dog Ownership And Cardiovascular Risk Factors: A Nationwide Register-Based Cohort Study
Mubanga M, Byberg L, Egenvall A, ..., Ingelsson E, Fall T
Global Heart 13 (4) 483 [2018-12-00; online 2018-12-00]
PO496 Dog Ownership and Mortality After a Major Cardiovascular Event – A Register-Based Prospective Study
Mubanga M, Byberg L, Egenvall A, Ingelsson E, Fall T
Global Heart 13 (4) 482-483 [2018-12-00; online 2018-12-00]
Image-Based Detection of Patient-Specific Drug-Induced Cell-Cycle Effects in Glioblastoma.
Matuszewski DJ, Wählby C, Krona C, Nelander S, Sintorn IM
SLAS Discov 23 (10) 1030-1039 [2018-12-00; online 2018-08-03]
Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes.
Lax G, Eglit Y, Eme L, ..., Roger AJ, Simpson AGB
Nature 564 (7736) 410-414 [2018-12-00; online 2018-11-14]
Front Cover
Kvarnung M, Taylan F, Nilsson D, ..., Nordgren A, Lundberg ES
Clin. Genet. 94 (6) - [2018-12-00; online 2018-11-14]
Differential clustering of fecal and mucosa-associated microbiota in 'healthy' individuals.
Carstens A, Roos A, Andreasson A, ..., Halfvarson J, Engstrand L
J Dig Dis 19 (12) 745-752 [2018-12-00; online 2018-11-24]
Bones in human CYP26B1 deficiency and rats with hypervitaminosis A phenocopy Vegfa overexpression.
Lind T, Lugano R, Gustafson AM, ..., Robertson SP, Andersson G
Bone Rep 9 (-) 27-36 [2018-12-00; online 2018-06-21]
Atrial fibrillation genetic risk differentiates cardioembolic stroke from other stroke subtypes.
Pulit SL, Weng LC, McArdle PF, ..., Lubitz SA, Anderson CD
Neurol Genet 4 (6) e293 [2018-12-00; online 2018-12-03]
Association of maternal prenatal smoking GFI1-locus and cardio-metabolic phenotypes in 18,212 adults.
Parmar P, Lowry E, Cugliari G, ..., Sebert S, GLOBAL Meth QTL Consortium
EBioMedicine 38 (-) 206-216 [2018-12-00; online 2018-11-13]
Ancestral diterpene cyclases show increased thermostability and substrate acceptance.
Hendrikse NM, Charpentier G, Nordling E, Syrén PO
FEBS J. 285 (24) 4660-4673 [2018-12-00; online 2018-11-16]
Air synthesis review: polycyclic aromatic compounds in the oil sands region
Harner T, Rauert C, Muir D, ..., Chow JC, Wang X
Environ. Rev. 26 (4) 430-468 [2018-12-00; online 2018-12-00]
A novel derivative of the fungal antimicrobial peptide plectasin is active against Mycobacterium tuberculosis.
Tenland E, Krishnan N, Rönnholm A, ..., Robertson BD, Godaly G
Tuberculosis (Edinb) 113 (-) 231-238 [2018-12-00; online 2018-10-30]
The APT complex is involved in non-coding RNA transcription and is distinct from CPF.
Lidschreiber M, Easter AD, Battaglia S, ..., Cramer P, Passmore LA
Nucleic Acids Res. 46 (21) 11528-11538 [2018-11-30; online 2018-09-25]
Microglia Induce PDGFRB Expression in Glioma Cells to Enhance Their Migratory Capacity.
Wallmann T, Zhang XM, Wallerius M, ..., Harris RA, Rolny C
iScience 9 (-) 71-83 [2018-11-30; online 2018-10-16]
Using High Content Imaging to Quantify Target Engagement in Adherent Cells.
Axelsson H, Almqvist H, Seashore-Ludlow B
J Vis Exp - (141) - [2018-11-29; online 2018-11-29]
Regulatory Changes in Pterin and Carotenoid Genes Underlie Balanced Color Polymorphisms in the Wall Lizard
Andrade P, Pinho C, de Lanuza GPi, ..., Andersson L, Carneiro M
- - (-) - [2018-11-29; online 2018-11-29]
Comparative Analysis of Independent Ex Vivo functional Drug Screens Identifies Predictive Biomarkers of BCL-2 Inhibitor Response in AML
White BS, Khan SA, Ammad-ud-din M, ..., Wennerberg K, Guinney J
Blood 132 (Supplement 1) 2763-2763 [2018-11-29; online 2018-11-29]
A Proinflammatory Invariant Natural Killer T Cells Phenotypic State Associates with Human Graft-Versus-Host Disease Onset and Response
Erkers T, Xei B, Kenyon L, ..., Maecker HT, Meyer EH
Blood 132 (Supplement 1) 2111-2111 [2018-11-29; online 2018-11-29]
pH Dependence of Zika Membrane Fusion Kinetics Reveals an Off-Pathway State.
Rawle RJ, Webster ER, Jelen M, Kasson PM, Boxer SG
ACS Cent Sci 4 (11) 1503-1510 [2018-11-28; online 2018-10-12]
Folding pathway of an Ig domain is conserved on and off the ribosome.
Tian P, Steward A, Kudva R, ..., Clarke J, Best RB
Proc. Natl. Acad. Sci. U.S.A. 115 (48) E11284-E11293 [2018-11-27; online 2018-11-09]
Immunoglobulin Gene Sequence Analysis In Chronic Lymphocytic Leukemia: From Patient Material To Sequence Interpretation.
Agathangelidis A, Sutton LA, Hadzidimitriou A, ..., Stamatopoulos K, Ghia P
J Vis Exp - (141) - [2018-11-26; online 2018-11-26]
Immunoglobulin Gene Sequence Analysis In Chronic Lymphocytic Leukemia: From Patient Material To Sequence Interpretation
Agathangelidis A, Sutton LA, Hadzidimitriou A, ..., Stamatopoulos K, Ghia P
J Vis Exp - (141) - [2018-11-26; online 2018-11-26]
Hundreds of Unrecognized Halogenated Contaminants Discovered in Polar Bear Blood
Liu Y, Richardson ES, Derocher AE, ..., Cheng L, Martin JW
- - (-) - [2018-11-23; online 2018-11-23]
Clinical factors predicting drug-induced liver injury due to flucloxacillin.
Lindh M, Hallberg P, Yue QY, Wadelius M
Drug Healthc Patient Saf 10 (-) 95-101 [2018-11-21; online 2018-11-21]
Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia.
Polychronidou E, Kalamaras I, Agathangelidis A, ..., Hatzidimitriou A, Tzovaras D
BMC Bioinformatics 19 (Suppl 14) 414 [2018-11-20; online 2018-11-20]
The Medical Genome Reference Bank: Whole genomes and phenotype of 2,570 healthy elderly
Pinese M, Lacaze P, Rath EM, ..., Dinger ME, Thomas DM
- - (-) - [2018-11-18; online 2018-11-18]
MutT homologue 1 (MTH1) catalyzes the hydrolysis of mutagenic O6-methyl-dGTP.
Jemth AS, Gustafsson R, Bräutigam L, ..., Stenmark P, Helleday T
Nucleic Acids Res. 46 (20) 10888-10904 [2018-11-16; online 2018-10-12]
Genomic analysis of dingoes identifies genomic regions under reversible selection during domestication and feralization
Zhang Sj, Wang GD, Ma P, ..., Savolainen P, Zhang Yp
- - (-) - [2018-11-16; online 2018-11-16]
Expression profiling and in situ screening of circular RNAs in human tissues.
Zaghlool A, Ameur A, Wu C, ..., Nilsson M, Feuk L
Sci Rep 8 (1) 16953 [2018-11-16; online 2018-11-16]
Levels of human proteins in plasma associated with acute paediatric malaria.
Reuterswärd P, Bergström S, Orikiiriza J, ..., Ribacke U, Nilsson P
Malar J 17 (1) 426 [2018-11-15; online 2018-11-15]
Dog characteristics and future risk of asthma in children growing up with dogs.
Fall T, Ekberg S, Lundholm C, Fang F, Almqvist C
Sci Rep 8 (1) 16899 [2018-11-15; online 2018-11-15]
Virus genomes from deep sea sediments expand the ocean megavirome and support independent origins of viral gigantism
Bäckström D, Yutin N, Jørgensen SL, ..., Koonin EV, Ettema TJG
- - (-) - [2018-11-14; online 2018-11-14]
Bioceramic microneedle arrays are able to deliver OVA to dendritic cells in human skin.
Vallhov H, Xia W, Engqvist H, Scheynius A
J Mater Chem B 6 (42) 6808-6816 [2018-11-14; online 2018-10-11]
Author Correction: Bi-directional cell-pericellular matrix interactions direct stem cell fate.
Ferreira SA, Motwani MS, Faull PA, ..., Bozec L, Gentleman E
Nat Commun 9 (1) 4851 [2018-11-14; online 2018-11-14]
Vaccination and Allergic Sensitization in Early Childhood - The ALADDIN Birth Cohort.
Swartz J, Aronsson B, Lindblad F, ..., Pershagen G, Alm J
EClinicalMedicine 4-5 (-) 92-98 [2018-11-06; online 2018-11-06]
Forces drive basement membrane invasion in Caenorhabditis elegans.
Cáceres R, Bojanala N, Kelley LC, ..., Sherwood DR, Plastino J
Proc. Natl. Acad. Sci. U.S.A. 115 (45) 11537-11542 [2018-11-06; online 2018-10-22]
Ilaria Testa SciLifeLab Fellow
Predictors of persistent disease activity and long quiescence in systemic lupus erythematosus: results from the Hopkins Lupus Cohort.
Giannakou I, Chatzidionysiou K, Magder LS, ..., van Vollenhoven R, Petri MA
Lupus Sci Med 5 (1) e000287 [2018-11-02; online 2018-11-02]
USING PROTEOMICS TO ELUCIDATE HOW VOLUNTARY EXERCISE COMBATS AGING PHENOTYPES IN MTDNA MUTATOR MICE
Ross JM, Coppotelli G, Branca R, ..., Sinclair D, Olson L
- 2 (suppl_1) 334-334 [2018-11-01; online 2018-11-11]
Risk of Esophageal Adenocarcinoma After Antireflux Surgery in Patients With Gastroesophageal Reflux Disease in the Nordic Countries.
Maret-Ouda J, Wahlin K, Artama M, ..., von Euler-Chelpin M, Lagergren J
JAMA Oncol 4 (11) 1576-1582 [2018-11-01; online 2018-11-14]
Uncovering the regional localization of inhaled salmeterol retention in the lung.
Bäckström E, Hamm G, Nilsson A, ..., Goodwin RJA, Fridén M
Drug Deliv 25 (1) 838-845 [2018-11-00; online 2018-03-29]
Affiliated researcher
Transfection of crayfish hematopoietic tissue cells.
Shi H, Ruan L, Söderhäll I, Söderhäll K, Xu X
Dev. Comp. Immunol. 88 (-) 70-76 [2018-11-00; online 2018-07-09]
The Neuropeptide Y System Regulates Both Mechanical and Histaminergic Itch.
Gao T, Ma H, Xu B, ..., Larhammar D, Lagerström MC
J. Invest. Dermatol. 138 (11) 2405-2411 [2018-11-00; online 2018-05-24]
Temporal variability of bacterioplankton is habitat driven.
Obertegger U, Bertilsson S, Pindo M, Larger S, Flaim G
Mol. Ecol. 27 (21) 4322-4335 [2018-11-00; online 2018-09-26]
Targeting BER enzymes in cancer therapy.
Visnes T, Grube M, Hanna BMF, ..., Cázares-Körner A, Helleday T
DNA Repair (Amst.) 71 (-) 118-126 [2018-11-00; online 2018-08-25]
SLC35A2-related congenital disorder of glycosylation: Defining the phenotype.
Yates TM, Suri M, Desurkar A, ..., Thuresson AC, Balasubramanian M
Eur. J. Paediatr. Neurol. 22 (6) 1095-1102 [2018-11-00; online 2018-08-27]
QCM mass underestimation in molecular biotechnology: Proximity ligation assay for norovirus detection as a case study
Neumann F, Madaboosi N, Hernández-Neuta I, ..., Mecea V, Nilsson M
Sensors and Actuators B: Chemical 273 (-) 742-750 [2018-11-00; online 2018-11-00]
Presence of thoracic and lumbar vertebral malformations in pugs with and without chronic neurological deficits.
Rohdin C, Häggström J, Ljungvall I, ..., Lindblad-Toh K, Hultin Jäderlund K
Vet. J. 241 (-) 24-30 [2018-11-00; online 2018-09-13]
PD-L1+ tumor-associated macrophages and PD-1+ tumor-infiltrating lymphocytes predict survival in primary testicular lymphoma.
Pollari M, Brück O, Pellinen T, ..., Leivonen SK, Leppä S
Haematologica 103 (11) 1908-1914 [2018-11-00; online 2018-07-19]
Metal-free ribonucleotide reduction powered by a DOPA radical in Mycoplasma pathogens.
Srinivas V, Lebrette H, Lundin D, ..., Sjöberg BM, Högbom M
Nature 563 (7731) 416-420 [2018-11-00; online 2018-10-31]
Human cytomegalovirus replication induces endothelial cell interleukin-11.
Gustafsson KLR, Renné T, Söderberg-Naucler C, Butler LM
Cytokine 111 (-) 563-566 [2018-11-00; online 2018-05-25]
Genomes of two archaeal endosymbionts show convergent adaptations to an intracellular lifestyle.
Lind AE, Lewis WH, Spang A, ..., Embley TM, Ettema TJG
ISME J 12 (11) 2655-2667 [2018-11-00; online 2018-07-10]
Flanking complex copy number variants in the same family formed through unequal crossing-over during meiosis.
Pettersson M, Eisfeldt J, Syk Lundberg E, Lundin J, Lindstrand A
Mutat Res 812 (-) 1-4 [2018-11-00; online 2018-10-22]
Epigenetic alterations in primary Sjögren's syndrome - an overview.
Imgenberg-Kreuz J, Sandling JK, Nordmark G
Clin. Immunol. 196 (-) 12-20 [2018-11-00; online 2018-04-09]
Detection of autoantibodies against cancer-testis antigens in non-small cell lung cancer.
Djureinovic D, Dodig-Crnković T, Hellström C, ..., Schwenk JM, Micke P
Lung Cancer 125 (-) 157-163 [2018-11-00; online 2018-09-17]
CRISPR-Cas9: A New Addition to the Drug Metabolism and Disposition Tool Box.
Karlgren M, Simoff I, Keiser M, Oswald S, Artursson P
Drug Metab. Dispos. 46 (11) 1776-1786 [2018-11-00; online 2018-08-20]
Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections.
Salmén F, Ståhl PL, Mollbrink A, ..., Frisén J, Lundeberg J
Nat Protoc 13 (11) 2501-2534 [2018-11-00; online 2018-10-26]
Sanja Vickovic SciLifeLab Fellow
Astrocyte-derived Jagged-1 mitigates deleterious Notch signaling in amyotrophic lateral sclerosis.
Nonneman A, Criem N, Lewandowski SA, ..., Van Den Bosch L, Robberecht W
Neurobiol. Dis. 119 (-) 26-40 [2018-11-00; online 2018-07-26]
Accumulation of endogenous peptides triggers a pathogen stress response in Arabidopsis thaliana.
Kmiec B, Branca RMM, Berkowitz O, ..., Glaser E, Teixeira PF
Plant J. 96 (4) 705-715 [2018-11-00; online 2018-09-23]
A new algorithm for high-resolution reconstruction of single particles by electron microscopy.
Sorzano COS, Vargas J, de la Rosa-Trevín JM, ..., Marabini R, Carazo JM
J. Struct. Biol. 204 (2) 329-337 [2018-11-00; online 2018-08-24]
Senolytic Cocktail Dasatinib+Quercetin (D+Q) Does Not Enhance the Efficacy of Senescence-Inducing Chemotherapy in Liver Cancer.
Kovacovicova K, Skolnaja M, Heinmaa M, ..., Bartek J, Vinciguerra M
Front Oncol 8 (-) 459 [2018-10-30; online 2018-10-30]
Affibody-derived drug conjugates: Potent cytotoxic molecules for treatment of HER2 over-expressing tumors.
Altai M, Liu H, Ding H, ..., Orlova A, Gräslund T
J Control Release 288 (-) 84-95 [2018-10-28; online 2018-08-30]
Electrospray sample injection for single-particle imaging with X-ray lasers
Bielecki J, Hantke MF, Daurer BJ, ..., Hajdu J, Maia FRNC
- - (-) - [2018-10-26; online 2018-10-26]
Detection of post-translational modifications using solid-phase proximity ligation assay.
Oliveira FMS, Mereiter S, Lönn P, ..., Reis CA, Kamali-Moghaddam M
N Biotechnol 45 (-) 51-59 [2018-10-25; online 2017-10-31]
A myopic perspective on the future of protein diagnostics.
Landegren U, Al-Amin RA, Björkesten J
N Biotechnol 45 (-) 14-18 [2018-10-25; online 2018-01-05]
Unicellular Origin of the Animal MicroRNA Machinery.
Bråte J, Neumann RS, Fromm B, ..., Grini PE, Shalchian-Tabrizi K
Curr. Biol. 28 (20) 3288-3295.e5 [2018-10-22; online 2018-10-11]
Programmed DNA elimination of germline development genes in songbirds
Kinsella CM, Ruiz-Ruano FJ, Dion-Côté AM, ..., Forstmeier W, Suh A
- - (-) - [2018-10-16; online 2018-10-16]
Spatially Resolved Transcriptomics Enables Dissection of Genetic Heterogeneity in Stage III Cutaneous Malignant Melanoma.
Thrane K, Eriksson H, Maaskola J, Hansson J, Lundeberg J
Cancer Res. 78 (20) 5970-5979 [2018-10-15; online 2018-08-28]
Samp1 Mislocalization in Emery-Dreifuss Muscular Dystrophy.
Mattioli E, Columbaro M, Jafferali MH, ..., Hallberg E, Lattanzi G
Cells 7 (10) - [2018-10-15; online 2018-10-15]
Reduced Expression of PROX1 Transitions Glioblastoma Cells into a Mesenchymal Gene Expression Subtype.
Goudarzi KM, Espinoza JA, Guo M, ..., Lindström MS, Hägerstrand D
Cancer Res. 78 (20) 5901-5916 [2018-10-15; online 2018-08-22]
Generalized displacement of DNA- and RNA-binding factors mediates the toxicity of arginine-rich cell-penetrating peptides
Lafarga V, Sirozh O, Díaz-López I, ..., Ventoso I, Fernandez-Capetillo O
- - (-) - [2018-10-14; online 2018-10-14]
The Cockayne syndrome protein B is involved in the repair of 5-AZA-2'-deoxycytidine-induced DNA lesions.
Burgos-Morón E, Calderón-Montaño JM, Pastor N, ..., Mateos S, Orta ML
Oncotarget 9 (80) 35069-35084 [2018-10-12; online 2018-10-12]
SPOP promotes transcriptional expression of DNA repair and replication factors to prevent replication stress and genomic instability.
Hjorth-Jensen K, Maya-Mendoza A, Dalgaard N, ..., Olsen JV, Flores-Morales A
Nucleic Acids Res. 46 (18) 9891 [2018-10-12; online 2018-08-31]
Convergent evolution of complex genomic rearrangements in two fungal meiotic drive elements.
Svedberg J, Hosseini S, Chen J, ..., Lascoux M, Johannesson H
Nat Commun 9 (1) 4242 [2018-10-12; online 2018-10-12]
IDH mutation status is associated with distinct vascular gene expression signatures in lower-grade gliomas.
Zhang L, He L, Lugano R, ..., Smits A, Dimberg A
Neuro-oncology 20 (11) 1505-1516 [2018-10-09; online 2018-05-31]
H19 Induces Abdominal Aortic Aneurysm Development and Progression.
Li DY, Busch A, Jin H, ..., Tsao PS, Maegdefessel L
Circulation 138 (15) 1551-1568 [2018-10-09; online 2018-04-20]
An orthotopic glioblastoma animal model suitable for high-throughput screenings.
Pudelko L, Edwards S, Balan M, ..., Helleday T, Bräutigam L
Neuro-oncology 20 (11) 1475-1484 [2018-10-09; online 2018-05-12]
Rapid Isolation of the Mitoribosome from HEK Cells
Aibara S, Andréll J, Singh V, Amunts A
J Vis Exp - (140) - [2018-10-04; online 2018-10-04]
Alexey Amunts SciLifeLab Fellow
Reconstitution of immune cell interactions in free-standing membranes.
Jenkins E, Santos AM, O'Brien-Ball C, ..., Eggeling C, Sezgin E
J. Cell. Sci. 132 (4) - [2018-10-02; online 2018-10-02]
Erdinc Sezgin SciLifeLab Fellow
Development and Validation of a Novel RNA Sequencing-Based Prognostic Score for Acute Myeloid Leukemia.
Wang M, Lindberg J, Klevebring D, ..., Grönberg H, Rantalainen M
J. Natl. Cancer Inst. 110 (10) 1094-1101 [2018-10-01; online 2018-03-06]
A spatial atlas of inhibitory cell types in mouse hippocampus
Qian X, Harris KD, Hauling T, ..., Hjerling-Leffler J, Nilsson M
- - (-) - [2018-10-01; online 2018-10-01]
The eukaryotic ancestor shapes up.
Eme L, Ettema TJG
Nature 562 (7727) 352-353 [2018-10-00; online 2018-10-17]
Quantifying Soft Tissue Changes in Cleft Lip and Palate Using Nonionizing Three-Dimensional Imaging: A Systematic Review.
Thierens LAM, De Roo NMC, De Pauw GAM, Brusselaers N
J Oral Maxillofac Surg 76 (10) 2210.e1-2210.e13 [2018-10-00; online 2018-05-26]
Mutation, methylation, and gene expression profiles in dup(1q)-positive pediatric B-cell precursor acute lymphoblastic leukemia.
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Leukemia 32 (10) 2117-2125 [2018-10-00; online 2018-03-12]
Molecular characterization of PRM-associated endometrial changes, PAEC, following mifepristone treatment.
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PLoS ONE 13 (9) e0204271 [2018-09-28; online 2018-09-28]
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PLoS ONE 13 (9) e0204234 [2018-09-27; online 2018-09-27]
Machine Learning Predicts the Yeast Metabolome from the Quantitative Proteome of Kinase Knockouts.
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PLoS ONE 13 (9) e0204522 [2018-09-25; online 2018-09-25]
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Benson E, Mohammed A, Rayneau-Kirkhope D, ..., Orponen P, Högberg B
ACS Nano 12 (9) 9291-9299 [2018-09-25; online 2018-09-06]
Erik Benson SciLifeLab Fellow
A drug screening assay on cancer cells chronically adapted to acidosis.
Pellegrini P, Serviss JT, Lundbäck T, ..., Linder S, De Milito A
Cancer Cell Int 18 (-) 147 [2018-09-25; online 2018-09-25]
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Nat Commun 9 (1) 3872 [2018-09-24; online 2018-09-24]
How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world’s largest rodent
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Vimentin Diversity in Health and Disease.
Danielsson F, Peterson MK, Caldeira Araújo H, Lautenschläger F, Gad AKB
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System-wide identification and prioritization of enzyme substrates by thermal analysis (SIESTA)
Saei AA, Beusch CM, Sabatier P, ..., Schüler H, Zubarev RA
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PLoS ONE 13 (9) e0204181 [2018-09-20; online 2018-09-20]
Analysis of porcine body size variation using re-sequencing data of miniature and large pigs.
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BMC Genomics 19 (1) 687 [2018-09-19; online 2018-09-19]
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Hofmeister W, Vaz R, Edwards S, Dueñas Rey A, Lindstrand A
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Dioecy in plants: an evolutionary dead end? Insights from a population genomics study in the Silene genus
Muyle A, Martin H, Zemp N, ..., Touzet P, Marais GA
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Phylogeny and Systematics of Kewa (Kewaceae)
Thulin M, Larsson A, Edwards EJ, Moore AJ
Systematic Botany 43 (3) 689-700 [2018-09-10; online 2018-09-10]
Genomic and Strontium Isotope Variation Reveal Immigration Patterns in a Viking Age Town.
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Monnahan P, Kolář F, Baduel P, ..., Bomblies K, Yant L
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SciLifeLab Fellow Tanja Slotte
Biogeochemical Cycling by a Low-Diversity Microbial Community in Deep Groundwater.
Bell E, Lamminmäki T, Alneberg J, ..., Sommer G, Bernier-Latmani R
Front Microbiol 9 (-) 2129 [2018-09-07; online 2018-09-07]
Xdrop: targeted sequencing of long DNA molecules from low input samples using droplet sorting
Madsen EB, Kvist T, Höijer I, Ameur A, Mikkelsen MJ
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A coding and non-coding transcriptomic perspective on the genomics of human metabolic disease.
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Nucleic Acids Res. 46 (15) 7772-7792 [2018-09-06; online 2018-07-10]
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The MDM2/MDMX-p53 Antagonist PM2 Radiosensitizes Wild-Type p53 Tumors.
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Cancer Res. 78 (17) 5084-5093 [2018-09-01; online 2018-07-19]
Neuronal Expression of Opioid Gene is Controlled by Dual Epigenetic and Transcriptional Mechanism in Human Brain.
Bazov I, Sarkisyan D, Kononenko O, ..., Yakovleva T, Bakalkin G
Cereb. Cortex 28 (9) 3129-3142 [2018-09-01; online 2017-10-03]
Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.
Lundholm IV, Sellberg JA, Ekeberg T, ..., Gorkhover T, Maia FRNC
IUCrJ 5 (Pt 5) 531-541 [2018-09-01; online 2018-09-01]
Complex Evolutionary History of Translation Elongation Factor 2 and Diphthamide Biosynthesis in Archaea and Parabasalids.
Narrowe AB, Spang A, Stairs CW, ..., Miller CS, Ettema TJG
Genome Biol Evol 10 (9) 2380-2393 [2018-09-01; online 2018-09-01]
Comparative analysis of tissue reconstruction algorithms for 3D histology.
Kartasalo K, Latonen L, Vihinen J, ..., Nykter M, Ruusuvuori P
Bioinformatics 34 (17) 3013-3021 [2018-09-01; online 2018-04-24]
DDLS Fellow Kimmo Kartasalo
The downfall of TBA-354 - a possible explanation for its neurotoxicity via mass spectrometric imaging.
Ntshangase S, Shobo A, Kruger HG, ..., Govender T, Baijnath S
Xenobiotica 48 (9) 938-944 [2018-09-00; online 2017-10-13]
Targeting EZH2 in Multiple Myeloma-Multifaceted Anti-Tumor Activity.
Alzrigat M, Jernberg-Wiklund H, Licht JD
Epigenomes 2 (3) - [2018-09-00; online 2018-09-03]
Targeting ATR in cancer.
Lecona E, Fernandez-Capetillo O
Nat. Rev. Cancer 18 (9) 586-595 [2018-09-00; online 2018-06-15]
Survival of Campylobacter jejuni and Campylobacter coli water isolates in lake and well water.
Nilsson A, Johansson C, Skarp A, ..., Bertilsson S, Rautelin H
APMIS 126 (9) 762-770 [2018-09-00; online 2018-08-31]
Superoxide: quinone oxidoreductase – a new player in the respiratory chain?
von Ballmoos C, Lundgren CAK, Sjöstrand D, ..., Carlsson J, Högbom M
Biochim Biophys Acta Bioenerg 1859 (-) e10-e11 [2018-09-00; online 2018-09-00]
Refractory chronic "ITP": When platelet size matters.
Baliakas P, Kättström M, Rossing M, Amini RM
Clin Case Rep 6 (9) 1779-1780 [2018-09-00; online 2018-07-20]
Prognostic, predictive, and pharmacogenomic assessments of CDX2 refine stratification of colorectal cancer.
Bruun J, Sveen A, Barros R, ..., Almeida R, Lothe RA
Mol Oncol 12 (9) 1639-1655 [2018-09-00; online 2018-08-15]
PD-L1 Immunohistochemistry Comparability Study in Real-Life Clinical Samples: Results of Blueprint Phase 2 Project.
Tsao MS, Kerr KM, Kockx M, ..., Yatabe Y, Hirsch FR
J Thorac Oncol 13 (9) 1302-1311 [2018-09-00; online 2018-05-22]
Ein Fall von Pankreaskarzinom
Löhr JM, Kordes M, Gustafsson-Liljefors M, ..., Permert J, Jäger D
Forum 33 (4) 232-235 [2018-09-00; online 2018-08-14]
Bone Research Society Abstracts
Bradley M, Martin I, Roelofs A, ..., Blain E, Evans B
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Autoantibody profiling reveals four protein candidate autoantigens associated with systemic lupus erythematosus.
Frostegård J, Hellström C, Nilsson P, Frostegård AG, Ajeganova S
Lupus 27 (10) 1670-1678 [2018-09-00; online 2018-07-24]
An update on the role of type I interferons in systemic lupus erythematosus and Sjögren's syndrome.
Thorlacius GE, Wahren-Herlenius M, Rönnblom L
Curr Opin Rheumatol 30 (5) 471-481 [2018-09-00; online 2018-06-12]
A fine-needle aspiration-based protein signature discriminates benign from malignant breast lesions.
Franzén B, Kamali-Moghaddam M, Alexeyenko A, ..., Landegren U, Lewensohn R
Mol Oncol 12 (9) 1415-1428 [2018-09-00; online 2018-08-09]
Tales of Human Migration, Admixture, and Selection in Africa.
Schlebusch CM, Jakobsson M
Annu Rev Genomics Hum Genet 19 (-) 405-428 [2018-08-31; online 2018-05-04]
Ca2+-binding protein NECAB2 facilitates inflammatory pain hypersensitivity.
Zhang MD, Su J, Adori C, ..., Harkany T, Hökfelt T
J. Clin. Invest. 128 (9) 3757-3768 [2018-08-31; online 2018-07-30]
e-workflow for recording of glycomic mass spectrometric data in compliance with reporting guidelines
Rojas-Macias MA, Mariethoz J, Andersson P, ..., Lisacek F, Karlsson NG
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A Protein‐Based Encapsulation System with Calcium‐Controlled Cargo Loading and Detachment
Lizatović R, Assent M, Barendregt A, ..., Wennmalm S, André I
Angewandte Chemie 130 (35) 11504-11508 [2018-08-27; online 2018-07-30]
A Protein-Based Encapsulation System with Calcium-Controlled Cargo Loading and Detachment.
Lizatović R, Assent M, Barendregt A, ..., Wennmalm S, André I
Angew. Chem. Int. Ed. Engl. 57 (35) 11334-11338 [2018-08-27; online 2018-07-30]
Association of tamoxifen resistance and lipid reprogramming in breast cancer.
Hultsch S, Kankainen M, Paavolainen L, ..., Pietiäinen V, Kallioniemi O
BMC Cancer 18 (1) 850 [2018-08-24; online 2018-08-24]
Stereotypic Immune System Development in Newborn Children.
Olin A, Henckel E, Chen Y, ..., Bohlin K, Brodin P
Cell 174 (5) 1277-1292.e14 [2018-08-23; online 2018-08-25]
Transcriptional Convergence of Oligodendrocyte Lineage Progenitors during Development.
Marques S, van Bruggen D, Vanichkina DP, ..., Taft RJ, Castelo-Branco G
Dev. Cell 46 (4) 504-517.e7 [2018-08-20; online 2018-08-02]
Sulfonimidamides: Synthesis and Applications in Preparative Organic Chemistry
Nandi GC, Arvidsson PI
Adv. Synth. Catal. 360 (16) 2976-3001 [2018-08-17; online 2018-05-25]
Predicting drug permeability through skin using molecular dynamics simulation.
Lundborg M, Wennberg CL, Narangifard A, Lindahl E, Norlén L
J Control Release 283 (-) 269-279 [2018-08-10; online 2018-06-01]
Proteomic Biomarkers for Incident Aortic Stenosis Requiring Valvular Replacement.
Ljungberg J, Janiec M, Bergdahl IA, ..., Fall T, Söderberg S
Circulation 138 (6) 590-599 [2018-08-07; online 2018-03-01]
PconsC4: fast, free, easy, and accurate contact predictions
Michel M, Hurtado DM, Elofsson A
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Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling.
Lopez-Fernandez M, Broman E, Turner S, ..., Bertilsson S, Dopson M
FEMS Microbiol. Ecol. 94 (8) - [2018-08-01; online 2018-06-23]
Different menopausal hormone regimens and risk of breast cancer.
Brusselaers N, Tamimi RM, Konings P, ..., Adami HO, Lagergren J
Ann. Oncol. 29 (8) 1771-1776 [2018-08-01; online 2018-06-20]
Complex coacervation-based loading and tunable release of a cationic protein from monodisperse glycosaminoglycan microgels.
Schuurmans CCL, Abbadessa A, Bengtson MA, ..., Hennink WE, Vermonden T
Soft Matter 14 (30) 6327-6341 [2018-08-01; online 2018-07-20]
CD93 promotes β1 integrin activation and fibronectin fibrillogenesis during tumor angiogenesis.
Lugano R, Vemuri K, Yu D, ..., Dejana E, Dimberg A
J. Clin. Invest. 128 (8) 3280-3297 [2018-08-01; online 2018-06-25]
An imidazole based H-Phe-Phe-NH2 peptidomimetic with anti-allodynic effect in spared nerve injury mice.
Skogh A, Lesniak A, Sköld C, ..., Hallberg M, Sandström A
Bioorg. Med. Chem. Lett. 28 (14) 2446-2450 [2018-08-01; online 2018-06-15]
The PDGF/PDGFR pathway as a drug target.
Papadopoulos N, Lennartsson J
Mol. Aspects Med. 62 (-) 75-88 [2018-08-00; online 2017-11-15]
Structure and function of the global topsoil microbiome.
Bahram M, Hildebrand F, Forslund SK, ..., Tedersoo L, Bork P
Nature 560 (7717) 233-237 [2018-08-00; online 2018-08-01]
DDLS Fellow Johan Bengtsson-Palme
RNA velocity of single cells.
La Manno G, Soldatov R, Zeisel A, ..., Linnarsson S, Kharchenko PV
Nature 560 (7719) 494-498 [2018-08-00; online 2018-08-08]
Plasma Protein Profiling Reveal Osteoprotegerin as a Marker of Prognostic Impact for Colorectal Cancer.
Birgisson H, Tsimogiannis K, Freyhult E, Kamali-Moghaddam M
Transl Oncol 11 (4) 1034-1043 [2018-08-00; online 2018-07-04]
Modulation of TGFβ/Smad signaling by the small GTPase RhoB.
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Memory T cells specific to citrullinated α-enolase are enriched in the rheumatic joint.
Pieper J, Dubnovitsky A, Gerstner C, ..., Achour A, Malmström V
J. Autoimmun. 92 (-) 47-56 [2018-08-00; online 2018-05-28]
Human skin barrier structure and function analyzed by cryo-EM and molecular dynamics simulation.
Lundborg M, Narangifard A, Wennberg CL, ..., Daneholt B, Norlén L
J. Struct. Biol. 203 (2) 149-161 [2018-08-00; online 2018-04-24]
Epigenetics in pediatric acute lymphoblastic leukemia.
Nordlund J, Syvänen AC
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Epigenetics in multiple myeloma: From mechanisms to therapy.
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Semin. Cancer Biol. 51 (-) 101-115 [2018-08-00; online 2017-09-27]
Epigenetic deregulation in chronic lymphocytic leukemia: Clinical and biological impact.
Mansouri L, Wierzbinska JA, Plass C, Rosenquist R
Semin. Cancer Biol. 51 (-) 1-11 [2018-08-00; online 2018-02-07]
Cytokines regulating lymphangiogenesis.
Sáinz-Jaspeado M, Claesson-Welsh L
Curr Opin Immunol 53 (-) 58-63 [2018-08-00; online 2018-04-20]
Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance.
Larsson DGJ, Andremont A, Bengtsson-Palme J, ..., Wellington EM, Wernersson AS
Environ Int 117 (-) 132-138 [2018-08-00; online 2018-05-07]
DDLS Fellow Johan Bengtsson-Palme
Consensus guidelines for the use and interpretation of angiogenesis assays.
Nowak-Sliwinska P, Alitalo K, Allen E, ..., Yoder MC, Griffioen AW
Angiogenesis 21 (3) 425-532 [2018-08-00; online 2018-05-17]
Characterization of Swedish Campylobacter coli clade 2 and clade 3 water isolates.
Nilsson A, Skarp A, Johansson C, ..., Engstrand L, Rautelin H
Microbiologyopen 7 (4) e00583 [2018-08-00; online 2018-02-09]
Changes in markers of liver function in relation to changes in perfluoroalkyl substances - A longitudinal study.
Salihovic S, Stubleski J, Kärrman A, ..., Lind L, Lind PM
Environ Int 117 (-) 196-203 [2018-08-00; online 2018-05-10]
Regulation of Neuronal Na,K-ATPase by Extracellular Scaffolding Proteins.
Liebmann T, Fritz N, Kruusmägi M, ..., Aperia A, Brismar H
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Whole genome SNP-associated signatures of local adaptation in honeybees of the Iberian Peninsula.
Henriques D, Wallberg A, Chávez-Galarza J, ..., Webster MT, Pinto MA
Sci Rep 8 (1) 11145 [2018-07-24; online 2018-07-24]
Refined detection and phasing of structural aberrations in pediatric acute lymphoblastic leukemia by linked-read whole genome sequencing
Nordlund J, Marincevic-Zuniga Y, Cavelier L, ..., Lönnerholm G, Syvänen AC
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High-resolution regulatory maps connect cardiovascular risk variants to disease related pathways
Åkerborg Ö, Spalinskas R, Pradhananga S, ..., Eriksson P, Sahlén P
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Heterogeneity and interplay of the extracellular vesicle small RNA transcriptome and proteome.
Sork H, Corso G, Krjutskov K, ..., Mäger I, El Andaloussi S
Sci Rep 8 (1) 10813 [2018-07-17; online 2018-07-17]
Molecular profiles of oxyphilic and chief cell parathyroid adenoma.
Lu M, Kjellin H, Fotouhi O, ..., Lehtiö J, Larsson C
Mol. Cell. Endocrinol. 470 (-) 84-95 [2018-07-15; online 2017-10-03]
Discovery of a Series of Indole-2 Carboxamides as Selective Secreted Phospholipase A2 Type X (sPLA2-X) Inhibitors.
Knerr L, Giordanetto F, Nordberg P, ..., Roth RG, Ahlqvist M
ACS Med. Chem. Lett. 9 (7) 594-599 [2018-07-12; online 2018-06-23]
Rare Copy Number Variants in Array-Based Comparative Genomic Hybridization in Early-Onset Skeletal Fragility.
Costantini A, Skarp S, Kämpe A, ..., Lindstrand A, Mäkitie O
Front Endocrinol (Lausanne) 9 (-) 380 [2018-07-10; online 2018-07-10]
Rapid Phenotypic Antibiotic Susceptibility Testing of Uropathogens Using Optical Signal Analysis on the Nanowell Slide.
Veses-Garcia M, Antypas H, Löffler S, ..., Andersson-Svahn H, Richter-Dahlfors A
Front Microbiol 9 (-) 1530 [2018-07-10; online 2018-07-10]
A hybrid de novo genome assembly of the honeybee, Apis mellifera , with chromosome-length scaffolds
Wallberg A, Bunikis I, Pettersson OV, ..., Robinson GE, Webster MT
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Charting Tissue Expression Anatomy by Spatial Transcriptome Decomposition
Maaskola J, Bergenstråhle L, Jurek A, ..., Lagergren J, Lundeberg J
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Primary glioblastoma cells for precision medicine: a quantitative portrait of genomic (in)stability during the first 30 passages.
Baskaran S, Mayrhofer M, Kultima HG, ..., Isaksson A, Nelander S
Neuro-oncology 20 (8) 1080-1091 [2018-07-05; online 2018-02-21]
DNA Replication Determines Timing of Mitosis by Restricting CDK1 and PLK1 Activation.
Lemmens B, Hegarat N, Akopyan K, ..., Hochegger H, Lindqvist A
Mol. Cell 71 (1) 117-128.e3 [2018-07-05; online 2018-06-28]
Morphological and genetic variation ofFucusin the eastern Gulf of Bothnia, northern Baltic Sea
Rinne H, Björkman U, Sjöqvist C, Salovius-Laurén S, Mattila J
European Journal of Phycology 53 (3) 369-380 [2018-07-03; online 2018-05-17]
Inhibition of integrin αVβ6 changes fibril thickness of stromal collagen in experimental carcinomas.
Olof Olsson P, Gustafsson R, Salnikov AV, ..., Heldin NE, Rubin K
Cell Commun. Signal 16 (1) 36 [2018-07-02; online 2018-07-02]
EviNet: a web platform for network enrichment analysis with flexible definition of gene sets.
Jeggari A, Alekseenko Z, Petrov I, ..., Ericson J, Alexeyenko A
Nucleic Acids Res. 46 (W1) W163-W170 [2018-07-02; online 2018-06-13]
SETD2 Is Recurrently Mutated in Whole-Exome Sequenced Canine Osteosarcoma.
Sakthikumar S, Elvers I, Kim J, ..., Marinescu VD, Lindblad-Toh K
Cancer Res. 78 (13) 3421-3431 [2018-07-01; online 2018-05-03]
Genome Evolution of Bartonellaceae Symbionts of Ants at the Opposite Ends of the Trophic Scale.
Bisch G, Neuvonen MM, Pierce NE, ..., Lukasik P, Andersson SGE
Genome Biol Evol 10 (7) 1687-1704 [2018-07-01; online 2018-07-10]
Abstract 5302: Phenotypic heterogeneity of patient-derived tumor cells visualized by unsupervised analysis in cell-based personalized drug testing
Turkki R, Paavolainen L, Mikkonen P, ..., Pietiäinen V, Kallioniemi O
Cancer Res. 78 (13_Supplement) 5302-5302 [2018-07-01; online 2018-07-01]
A synthetic diphosphoinositol phosphate analogue of inositol trisphosphate.
Riley AM, Unterlass J, Konieczny V, ..., Helleday T, Potter BVL
Med. Chem. Commun. 9 (7) 1105-1113 [2018-07-01; online 2018-06-04]
Oak genome reveals facets of long lifespan.
Plomion C, Aury JM, Amselem J, ..., Kremer A, Salse J
Nat Plants 4 (7) 440-452 [2018-07-00; online 2018-06-18]
Novel gene variants associated with cardiovascular disease in systemic lupus erythematosus and rheumatoid arthritis.
Leonard D, Svenungsson E, Dahlqvist J, ..., Criswell LA, Rönnblom L
Ann. Rheum. Dis. 77 (7) 1063-1069 [2018-07-00; online 2018-03-07]
Mining the Human Tissue Proteome for Protein Citrullination.
Lee CY, Wang D, Wilhelm M, ..., Hahne H, Kuster B
Mol. Cell Proteomics 17 (7) 1378-1391 [2018-07-00; online 2018-04-02]
MGST1, a GSH transferase/peroxidase essential for development and hematopoietic stem cell differentiation.
Bräutigam L, Zhang J, Dreij K, ..., Morgenstern R, Johansson K
Redox Biol 17 (-) 171-179 [2018-07-00; online 2018-04-16]
Immune cell contexture in the bone marrow tumor microenvironment impacts therapy response in CML.
Brück O, Blom S, Dufva O, ..., Pellinen T, Mustjoki S
Leukemia 32 (7) 1643-1656 [2018-07-00; online 2018-06-20]
High speed of fork progression induces DNA replication stress and genomic instability.
Maya-Mendoza A, Moudry P, Merchut-Maya JM, ..., Strauss R, Bartek J
Nature 559 (7713) 279-284 [2018-07-00; online 2018-06-27]
Genome-wide expression analysis suggests a role for jasmonates in the resistance to blue mold in apple
Ahmadi-Afzadi M, Orsel M, Pelletier S, ..., Nybom H, Renou JP
Plant Growth Regul 85 (3) 375-387 [2018-07-00; online 2018-04-18]
Demographic expansion and genetic load of the halophyte model plant Eutrema salsugineum.
Wang XJ, Hu QJ, Guo XY, ..., Lascoux M, Liu JQ
Mol. Ecol. 27 (14) 2943-2955 [2018-07-00; online 2018-06-22]
Affiliated researcher
Childhood Bereavement and Lower Stress Resilience in Late Adolescence.
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High methylmercury formation in ponds fueled by fresh humic and algal derived organic matter
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A Common Peptidolytic Mechanism for Targeting Peptide Degradation in Mitochondria and Chloroplasts.
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A translational effort to identify prognostic and predictive biomarkers in pancreatic cancer among RBM3-regulated genes.
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U-CAN: a prospective longitudinal collection of biomaterials and clinical information from adult cancer patients in Sweden.
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Structural Details of an Allosteric Mechanism for Bimodal Anesthetic Modulation of Pentameric Ligand-Gated Ion Channels
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Comparative Action of Cardiotonic Steroids on Intracellular Processes in Rat Cortical Neurons.
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Asian horses deepen the MSY phylogeny.
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A DNA methylation biomarker of alcohol consumption.
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Ancient human DNA: How sequencing the genome of a boy from Ballito Bay changed human history
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The Folding Pathway of an Ig Domain is Conserved On and Off the Ribosome
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The Charlson Comorbidity Index in Registry-based Research.
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Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells.
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Genome-wide association meta-analysis of PR interval identifies 47 novel loci associated with atrial and atrioventricular electrical activity
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The Viral Protein Corona Directs Viral Pathogenesis and Amyloid Aggregation
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Light-activatable prodrugs based on hyaluronic acid biomaterials.
Ossipov DA, Romero AB, Ossipova E
Carbohydr Polym 180 (-) 145-155 [2018-01-15; online 2017-10-06]
Intelligent image-based in situ single-cell isolation.
Brasko C, Smith K, Molnar C, ..., Tamas G, Horvath P
Nat Commun 9 (1) 226 [2018-01-15; online 2018-01-15]
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Forslund K, Pereira C, Capella-Gutierrez S, ..., Lewis S, Quest for Orthologs Consortium
Bioinformatics 34 (2) 323-329 [2018-01-15; online 2017-10-03]
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Citrullinated histone H3 as a novel prognostic blood marker in patients with advanced cancer.
Thålin C, Lundström S, Seignez C, ..., Wallén H, Demers M
PLoS ONE 13 (1) e0191231 [2018-01-11; online 2018-01-11]
The RNA Polymerase II Factor RPAP1 Is Critical for Mediator-Driven Transcription and Cell Identity.
Lynch CJ, Bernad R, Calvo I, ..., Munoz J, Serrano M
Cell Reports 22 (2) 396-410 [2018-01-09; online 2018-01-11]
TUFT1 interacts with RABGAP1 and regulates mTORC1 signaling.
Kawasaki N, Isogaya K, Dan S, ..., Miyazono K, Koinuma D
Cell Discov 4 (-) 1 [2018-01-09; online 2018-01-09]
Polysome-profiling in small tissue samples.
Liang S, Bellato HM, Lorent J, ..., Hajj GNM, Larsson O
Nucleic Acids Res. 46 (1) e3 [2018-01-09; online 2017-10-27]
Discovering viral genomes in human metagenomic data by predicting unknown protein families.
Barrientos-Somarribas M, Messina DN, Pou C, ..., Andersson B, Sonnhammer ELL
Sci Rep 8 (1) 28 [2018-01-08; online 2018-01-08]
FunCoup 4: new species, data, and visualization.
Ogris C, Guala D, Sonnhammer ELL
Nucleic Acids Res. 46 (D1) D601-D607 [2018-01-04; online 2017-11-23]
Elevated Proportions of Deleterious Genetic Variation in Domestic Animals and Plants.
Makino T, Rubin CJ, Carneiro M, ..., Andersson L, Webster MT
Genome Biol Evol 10 (1) 276-290 [2018-01-01; online 2018-01-13]
Cytokine Autoantibody Screening in the Swedish Addison Registry Identifies Patients With Undiagnosed APS1.
Eriksson D, Dalin F, Eriksson GN, ..., Bensing S, Kämpe O
J. Clin. Endocrinol. Metab. 103 (1) 179-186 [2018-01-01; online 2017-10-27]
Computational pan-genomics: status, promises and challenges.
Computational Pan-Genomics Consortium
Brief. Bioinformatics 19 (1) 118-135 [2018-01-01; online 2016-10-23]
Affiliated researcher
Vitamin D downregulates the IL-23 receptor pathway in human mucosal group 3 innate lymphoid cells.
Konya V, Czarnewski P, Forkel M, ..., Bergman P, Mjösberg J
J. Allergy Clin. Immunol. 141 (1) 279-292 [2018-01-00; online 2017-04-20]
The association between p,p'-DDE levels and left ventricular mass is mainly mediated by obesity.
La Merrill MA, Lind PM, Salihovic S, van Bavel B, Lind L
Environ. Res. 160 (-) 541-546 [2018-01-00; online 2017-10-26]
Single-molecule DNA sequencing of acute myeloid leukemia and myelodysplastic syndromes with multiple TP53 alterations.
Lodé L, Ameur A, Coste T, ..., Lavabre-Bertrand T, Soussi T
Haematologica 103 (1) e13-e16 [2018-01-00; online 2017-10-27]
Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation.
Günther T, Malmström H, Svensson EM, ..., Götherström A, Jakobsson M
PLoS Biol. 16 (1) e2003703 [2018-01-00; online 2018-01-09]
Normalization of mass spectrometry data (NOMAD).
Murie C, Sandri B, Sandberg AS, ..., Wendt C, Larsson O
Adv Biol Regul 67 (-) 128-133 [2018-01-00; online 2017-11-20]
MicroRNA expression profiles in non‑epithelial ovarian tumors.
Chang RK, Li X, Mu N, ..., Larsson C, Lui WO
Int. J. Oncol. 52 (1) 55-66 [2018-01-00; online 2017-11-10]
Linking T cell epitopes to a common linear B cell epitope: A targeting and adjuvant strategy to improve T cell responses.
Mangsbo SM, Fletcher EAK, van Maren WWC, ..., Ossendorp F, Drijfhout JW
Mol. Immunol. 93 (-) 115-124 [2018-01-00; online 2017-11-22]
Involvement of platelet-derived growth factor ligands and receptors in tumorigenesis.
Heldin CH, Lennartsson J, Westermark B
J. Intern. Med. 283 (1) 16-44 [2018-01-00; online 2017-10-17]
Homozygosity for a missense variant in COMP gene associated with severe pseudoachondroplasia.
Tariq M, Khan TN, Lundin L, ..., Dahl N, Klar J
Clin. Genet. 93 (1) 182-186 [2018-01-00; online 2017-11-21]
Heterologous transporter expression for improved fatty alcohol secretion in yeast.
Hu Y, Zhu Z, Nielsen J, Siewers V
Metab. Eng. 45 (-) 51-58 [2018-01-00; online 2017-11-26]
Evolution and postglacial colonization of Seewis hantavirus with Sorex araneus in Finland.
Ling J, Smura T, Tamarit D, ..., Vapalahti O, Sironen T
Infect. Genet. Evol. 57 (-) 88-97 [2018-01-00; online 2017-11-10]
Circulating proteins as predictors of incident heart failure in the elderly.
Stenemo M, Nowak C, Byberg L, ..., Fall T, Ärnlöv J
Eur. J. Heart Fail. 20 (1) 55-62 [2018-01-00; online 2017-10-02]
Trapping and Optical Identification of Microparticles in a Liquid with a Functional Optical Fiber Probe
Etcheverry S, Russom A, Laurell F, Margulis W
- - (-) AM4P.6 [2018-00-00; online 2018-00-00]
The Role of VEGF in Controlling Vascular Permeability
Venkatraman L, Claesson-Welsh L
- - (-) 1-18 [2018-00-00; online 2018-06-30]
Targeting DNA Repair in Anti-Cancer Treatments
Helleday T
- - (-) 1-9 [2018-00-00; online 2018-05-27]
Lab-on-DVD: Optical Disk Drive-Based Platforms for Point-of-Care Diagnostics
Banerjee I, Russom A
- - (-) 23-38 [2018-00-00; online 2018-02-03]
Identification and Verification of a Biomarker Panel for Early Diagnosis of Lung Cancer Patients
Geary B, Walker MJ, Snow JT, ..., Crosbie PA, Whetton A
- - (-) - [2018-00-00; online 2018-00-00]
Data Analysis in Transcriptomics and Metabolomics Clinical Applications
Gallart-Ayala H, Fernández-Navarro J, Checa A
- - (-) 613-641 [2018-00-00; online 2018-00-00]
Control of DNA Replication by ATR
Lecona E, Fernández-Capetillo O
- - (-) 35-61 [2018-00-00; online 2018-05-27]
Clinical Proteomics and Molecular Pathology
Liotta LA, Davis JB, Couch RD, ..., Petricoin E, Espina V
- - (-) 183-203 [2018-00-00; online 2018-00-00]
Approximations to Algorithmic Probability
Zenil H
- - (-) 651-661 [2018-00-00; online 2018-08-26]
An unexpected re-arrangement of the antibiotic carbapenem core to new 1,4-diazepin-5-one scaffolds
Peters BK, Razuwika R, Samipillai M, ..., Govender T, Naicker T
RSC Adv. 8 (1) 190-193 [2018-00-00; online 2018-00-00]
An Organ-Wide Gene Expression Atlas of the Developing Human Heart
Asp M, Giacomello S, Fürth D, ..., Sylvén C, Lundeberg J
SSRN Journal - (-) - [2018-00-00; online 2018-00-00]
Daniel Fürth Magda Bienko SciLifeLab Fellow
Algorithmic Cognition and the Computational Nature of the Mind
Zenil H, Gauvrit N
- - (-) 641-649 [2018-00-00; online 2018-08-26]
Algorithmic Cognition and the Computational Nature of the Mind
Zenil H, Gauvrit N
- - (-) 1-9 [2018-00-00; online 2017-11-17]
A System-wide Approach to Monitor Responses to Synergistic BRAF and EGFR Inhibition in Colorectal Cancer Cells
Ressa A, Bosdriesz E, de Ligt J, ..., Wessels L, Heck AJR
- - (-) - [2018-00-00; online 2018-00-00]

Publications 9.5.1