Publications 2023

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98 publications

PubMed DOI Crossref
Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.
Meineke B, Heimgärtner J, Caridha R, ..., Landreh M, Elsässer SJ
Cell Rep Methods 3 (11) 100626 [2023-11-20; online 2023-11-06]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
CCR5 promoter region polymorphisms in systemic lupus erythematosus.
Schauren JDS, de Oliveira AH, Consiglio CR, ..., Ellwanger JH, Chies JAB
Int J Immunogenet - (-) - [2023-11-20; online 2023-11-20]
Camila Consiglio DDLS Fellow
PubMed DOI Crossref
The association of the RSC remodeler complex with chromatin is influenced by the prefoldin-like Bud27 and determines nucleosome positioning and polyadenylation sites usage in Saccharomyces cerevisiae.
Cuevas-Bermúdez A, Martínez-Fernández V, Garrido-Godino AI, ..., Pelechano V, Francisco N
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms - (-) 194995 [2023-11-13; online 2023-11-13]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
SRCAP mutations drive clonal hematopoiesis through epigenetic and DNA repair dysregulation.
Chen CW, Zhang L, Dutta R, ..., Sperling AS, Goodell MA
Cell Stem Cell 30 (11) 1503-1519.e8 [2023-11-02; online 2023-10-19]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Identification of nutritional biomarkers through highly sensitive and chemoselective metabolomics.
Lin W, Mellinghaus K, Rodriguez-Mateos A, Globisch D
Food Chem 425 (-) 136481 [2023-11-01; online 2023-06-01]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Functional and molecular profiling of hematopoietic stem cells during regeneration.
Rydström A, Grahn THM, Niroula A, ..., Larsson J, Karlsson S
Exp. Hematol. 127 (-) 40-51 [2023-11-00; online 2023-09-04]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
PACMan: A software package for automated single-cell chlorophyll fluorometry.
Pontén O, Xiao L, Kutter J, ..., Wählby C, Behrendt L
Cytometry A - (-) - [2023-10-20; online 2023-10-20]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
Coinhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancer via readthrough transcription.
Cameron DP, Grosser J, Ladigan S, ..., Hahn SA, Baranello L
Sci Adv 9 (41) eadg5109 [2023-10-13; online 2023-10-13]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Discovery and characterisation of quinazolines and 8-Azaquinazolines as NLRP3 agonists with oral bioavailability in mice.
O' Donovan DH, Baker D, Ciotta G, ..., Tang H, Valge-Archer V
Bioorg. Med. Chem. Lett. 96 (-) 129518 [2023-10-12; online 2023-10-12]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Functional imaging studies of acute administration of classic psychedelics, ketamine, and MDMA: Methodological limitations and convergent results.
Linguiti S, Vogel JW, Sydnor VJ, ..., Dworkin RH, Satterthwaite TD
Neurosci Biobehav Rev 154 (-) 105421 [2023-10-05; online 2023-10-05]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Connectome-based modelling of neurodegenerative diseases: towards precision medicine and mechanistic insight.
Vogel JW, Corriveau-Lecavalier N, Franzmeier N, ..., Jones DT, Ewers M
Nat Rev Neurosci 24 (10) 620-639 [2023-10-00; online 2023-08-24]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Genetic modification of inflammation- and clonal hematopoiesis-associated cardiovascular risk.
Yu Z, Fidler TP, Ruan Y, ..., Tall AR, Natarajan P
J. Clin. Invest. 133 (18) - [2023-09-15; online 2023-09-15]
Abhishek Niroula DDLS Fellow
DOI Crossref
Estrogen receptor activation remodelsTEAD1gene expression to alleviate nonalcoholic fatty liver disease
Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C
- - (-) - [2023-09-08; online 2023-09-08]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Digital assay for rapid electronic quantification of clinical pathogens using DNA nanoballs.
Tayyab M, Barrett D, van Riel G, ..., Javanmard M, Pelechano V
Sci Adv 9 (36) eadi4997 [2023-09-08; online 2023-09-06]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Structure-based virtual screening discovers potent and selective adenosine A1 receptor antagonists.
Matricon P, Nguyen AT, Vo DD, ..., May LT, Carlsson J
Eur J Med Chem 257 (-) 115419 [2023-09-05; online 2023-05-01]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Exposure of volunteers to microgravity by dry immersion bed over 21 days results in gene expression changes and adaptation of T cells.
Gallardo-Dodd CJ, Oertlin C, Record J, ..., Ponomarev SA, Westerberg LS
Sci Adv 9 (34) eadg1610 [2023-08-25; online 2023-08-25]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Immobilized Enzymes on Magnetic Beads for Separate Mass Spectrometric Investigation of Human Phase II Metabolite Classes.
Tsiara I, Riemer A, Correia MSP, Rodriguez-Mateos A, Globisch D
Anal. Chem. 95 (33) 12565-12571 [2023-08-22; online 2023-08-08]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Naltrexone blocks alcohol-induced effects on kappa-opioid receptors in the plasma membrane.
Terenius L, Oasa S, Sezgin E, ..., Martin-Fardon R, Vukojevic V
Res Sq - (-) - [2023-07-21; online 2023-07-21]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Development of an Effective Functional Lipid Anchor for Membranes (FLAME) for the Bioorthogonal Modification of the Lipid Bilayer of Mesenchymal Stromal Cells.
Sternstein C, Böhm TM, Fink J, ..., Ebert R, Seibel J
Bioconjug. Chem. 34 (7) 1221-1233 [2023-07-19; online 2023-06-16]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Nanopore sequencing of PCR products enables multicopy gene family reconstruction.
Namias A, Sahlin K, Makoundou P, ..., Belkhir K, Weill M
Comput Struct Biotechnol J 21 (-) 3656-3664 [2023-07-16; online 2023-07-16]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
A data-driven study of Alzheimer's disease related amyloid and tau pathology progression.
Aksman LM, Oxtoby NP, Scelsi MA, ..., Altmann A, ADNI
Brain - (-) - [2023-07-11; online 2023-07-11]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Establishing mammalian GLUT kinetics and lipid composition influences in a reconstituted-liposome system.
Suades A, Qureshi A, McComas SE, ..., Carlsson J, Drew D
Nat Commun 14 (1) 4070 [2023-07-10; online 2023-07-10]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms.
Erdem C, Gross SM, Heiser LM, Birtwistle MR
Nat Commun 14 (1) 3991 [2023-07-06; online 2023-07-06]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
Birth Weight Is Associated With Clonal Hematopoiesis of Indeterminate Potential and Cardiovascular Outcomes in Adulthood.
Schuermans A, Nakao T, Ruan Y, ..., Natarajan P, Honigberg MC
J Am Heart Assoc 12 (13) e030220 [2023-07-04; online 2023-06-22]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Sex and gender in infection and immunity: addressing the bottlenecks from basic science to public health and clinical applications.
Pasin C, Consiglio CR, Huisman JS, ..., Kouyos RD, Bonhoeffer S
R Soc Open Sci 10 (7) 221628 [2023-07-00; online 2023-07-05]
Camila Consiglio DDLS Fellow
PubMed DOI Crossref
HLA Class I Genotype Is Associated with Relapse Risk after Allogeneic Stem Cell Transplantation for NPM1-Mutated Acute Myeloid Leukemia.
Narayan R, Niroula A, Wang T, ..., Spellman S, Lee SJ
Transplant Cell Ther 29 (7) 452.e1-452.e11 [2023-07-00; online 2023-03-29]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Entropy predicts sensitivity of pseudorandom seeds.
Maier BD, Sahlin K
Genome Res 33 (7) 1162-1174 [2023-07-00; online 2023-05-22]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Efficient mapping of accurate long reads in minimizer space with mapquik.
Ekim B, Sahlin K, Medvedev P, Berger B, Chikhi R
Genome Res 33 (7) 1188-1197 [2023-07-00; online 2023-06-30]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
isONform: reference-free transcriptome reconstruction from Oxford Nanopore data.
Petri AJ, Sahlin K
Bioinformatics 39 (39 Suppl 1) i222-i231 [2023-06-30; online 2023-06-30]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Persistent immunosuppressive effects of dibutyl phthalate exposure in adult male mice.
Pierozan P, Källsten L, Theodoropoulou E, Almamoun R, Karlsson O
Sci. Total Environ. 878 (-) 162741 [2023-06-20; online 2023-03-11]
Oskar Karlsson SciLifeLab Fellow
PubMed DOI Crossref
Host Phylogeny Structures the Gut Bacterial Community Within Galerucella Leaf Beetles.
An Y, Braga MP, Garcia SL, Grudzinska-Sterno M, Hambäck PA
Microb. Ecol. - (-) - [2023-06-14; online 2023-06-14]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
High-throughput measurement of the content and properties of nano-sized bioparticles with single-particle profiler.
Sych T, Schlegel J, Barriga HMG, ..., Stevens MM, Sezgin E
Nat. Biotechnol. - (-) - [2023-06-12; online 2023-06-12]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Generation of Amber Suppression Cell Lines Using CRISPR-Cas9.
Meineke B, Elsässer SJ
Methods in molecular biology (Clifton, N.J.) 2676 (-) 169-180 [2023-06-06; online 2023-06-06]
SciLifeLab Fellow Simon Elsässer
DOI Crossref
Ribosome clustering and surface layer reorganization in the microsporidian host-invasion apparatus
Sharma H, Jespersen N, Ehrenbolger K, Carlson LA, Barandun J
- - (-) - [2023-06-04; online 2023-06-04]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Obesity-induced inflammation exacerbates clonal hematopoiesis.
Pasupuleti SK, Ramdas B, Burns SS, ..., Natarajan P, Kapur R
J. Clin. Invest. 133 (11) - [2023-06-01; online 2023-06-01]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
A survey of mapping algorithms in the long-reads era.
Sahlin K, Baudeau T, Cazaux B, Marchet C
Genome Biol. 24 (1) 133 [2023-06-01; online 2023-06-01]
Kristoffer Sahlin SciLifeLab Fellow
Efficient Resource Scheduling for Distributed Infrastructures using Negotiation Capabilities
Chu J, Singh PS, Toor S
IEEE CLOUD 2023 - (-) - [2023-05-29]
Prashant Singh SciLifeLab Fellow
PubMed DOI Crossref
Chemoselective bicyclobutane-based mass spectrometric detection of biological thiols uncovers human and bacterial metabolites.
Kaur A, Lin W, Dovhalyuk V, ..., Sellin ME, Globisch D
Chem Sci 14 (20) 5291-5301 [2023-05-24; online 2023-04-06]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Clonal Hematopoiesis of Indeterminate Potential Predicts Adverse Outcomes in Patients With Atherosclerotic Cardiovascular Disease.
Gumuser ED, Schuermans A, Cho SMJ, ..., Natarajan P, Honigberg MC
J. Am. Coll. Cardiol. 81 (20) 1996-2009 [2023-05-23; online 2023-05-18]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Design of Drug Efficacy Guided by Free Energy Simulations of the β2 -Adrenoceptor.
Panel N, Vo DD, Kahlous NA, ..., Gmeiner P, Carlsson J
Angew. Chem. Int. Ed. Engl. 62 (22) e202218959 [2023-05-22; online 2023-04-20]
Jens Carlsson Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Atlas of mRNA translation and decay for bacteria.
Huch S, Nersisyan L, Ropat M, ..., Engstrand L, Pelechano V
Nat. Microbiol - (-) - [2023-05-22; online 2023-05-22]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Development and Characterization of Novel Selective, Non-Basic Dopamine D2 Receptor Antagonists for the Treatment of Schizophrenia.
Stępnicki P, Wośko S, Bartyzel A, ..., Castro M, Kaczor AA
Molecules 28 (10) - [2023-05-20; online 2023-05-20]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Membranes in focus.
Sezgin E, Levental I
Biophys. J. - (-) - [2023-05-19; online 2023-05-19]
Erdinc Sezgin SciLifeLab Fellow
DOI Crossref
Striking allelic diversity despite structural homogeneity of ace-1 duplications in Anopheles mosquitoes
Claret JL, Di-Liegro M, Namias A, ..., Milesi P, Labbé P
- - (-) - [2023-05-12; online 2023-05-12]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
The oxDNA Coarse-Grained Model as a Tool to Simulate DNA Origami.
Doye JPK, Fowler H, Prešern D, ..., Poppleton E, Snodin BEK
Methods in molecular biology (Clifton, N.J.) 2639 (-) 93-112 [2023-05-11; online 2023-05-11]
Erik Benson SciLifeLab Fellow
PubMed DOI Crossref
Sensitive quantification of short-chain fatty acids combined with global metabolomics in microbiome cultures.
Lin W, García FR, Norin EL, ..., Du J, Globisch D
Chem. Commun. (Camb.) 59 (39) 5843-5846 [2023-05-11; online 2023-05-11]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
A Multiparametric and High-Throughput Platform for Host-Virus Binding Screens.
Schlegel J, Porebski B, Andronico L, ..., Fernandez-Capetillo O, Sezgin E
Nano Lett. 23 (9) 3701-3707 [2023-05-10; online 2023-03-09]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Data-driven neuropathological staging and subtyping of TDP-43 proteinopathies.
Young AL, Vogel JW, Robinson JL, ..., Lee EB, Hansson O
Brain - (-) - [2023-05-08; online 2023-05-08]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Comparison of Group-Level and Individualized Brain Regions for Measuring Change in Longitudinal Tau Positron Emission Tomography in Alzheimer Disease.
Leuzy A, Binette AP, Vogel JW, ..., Hansson O, Alzheimer’s Disease Neuroimaging Initiative
JAMA Neurol - (-) - [2023-05-08; online 2023-05-08]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
A practical approach to curate clonal hematopoiesis of indeterminate potential in human genetic data sets.
Vlasschaert C, Mack T, Heimlich JB, ..., Jaiswal S, Bick AG
Blood 141 (18) 2214-2223 [2023-05-04; online 2023-01-19]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Nontarget Analysis of Polluted Surface Waters in Bangladesh Using Open Science Workflows.
Bonnefille B, Karlsson O, Rian MB, ..., Islam MS, Martin JW
Environ. Sci. Technol. 57 (17) 6808-6824 [2023-05-02; online 2023-04-21]
Oskar Karlsson SciLifeLab Fellow
DOI Crossref
Adrenomedullin promotes interneuron migration in a dual human model for hypoxic interneuronopathy of prematurity
Michno WP, Puno A, Li L, ..., Willsey AJ, Pasca AM
- - (-) - [2023-05-01; online 2023-05-01]
SciLifeLab Fellow Wojciech Michno
PubMed DOI Crossref
Prediction of risk for myeloid malignancy in clonal hematopoiesis.
Weeks LD, Niroula A, Neuberg D, ..., Natarajan P, Ebert BL
NEJM Evid 2 (5) - [2023-05-00; online 2023-04-25]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Intrinsic lipolysis rate for systematic design of lipid-based formulations
Jacobsen AC, Kabedev A, Sinko PD, ..., Bergström CAS, Teleki A
Drug Deliv. and Transl. Res. 13 (5) 1288-1304 [2023-05-00; online 2022-10-08]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Acute nicotine exposure blocks aromatase in the limbic brain of healthy women: A [11C]cetrozole PET study.
Dubol M, Immenschuh J, Jonasson M, ..., Sundström-Poromaa I, Comasco E
Compr Psychiatry 123 (-) 152381 [2023-05-00; online 2023-03-05]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Reconfigurable self-assembled DNA devices.
Benson E, Bath J
Sci Robot 8 (77) eadh8148 [2023-04-26; online 2023-04-26]
Erik Benson SciLifeLab Fellow
PubMed DOI Crossref
Development of top-down cortical propagations in youth.
Pines A, Keller AS, Larsen B, ..., Fair DA, Satterthwaite TD
Neuron 111 (8) 1316-1330.e5 [2023-04-19; online 2023-02-17]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Monitoring beta cell survival after intrahepatic islet transplantation using dynamic exendin PET imaging: a proof-of-concept study in individuals with type 1 diabetes.
Jansen TJP, Buitinga M, Boss M, ..., de Koning EJP, Gotthardt M
Diabetes - (-) - [2023-04-17; online 2023-04-17]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Microscopy-based phenotypic monitoring of MDA-MB-231 spheroids allows the evaluation of phenotype-directed therapy.
Mahmoud L, Cougnoux A, Bekiari C, ..., Gsell L, Hausser J
Exp. Cell Res. 425 (2) 113527 [2023-04-15; online 2023-03-06]
Jean Hausser SciLifeLab Fellow
PubMed DOI Crossref
Emotion-induced brain activation across the menstrual cycle in individuals with premenstrual dysphoric disorder and associations to serum levels of progesterone-derived neurosteroids.
Stiernman L, Dubol M, Comasco E, ..., Johansson M, Bixo M
Transl Psychiatry 13 (1) 124 [2023-04-14; online 2023-04-14]
Erika Comasco SciLifeLab Fellow
DOI Crossref
CRISPR-Cas9-mediated genome engineering exaggerates genomic deletion at 10q23.31 including the<i>PTEN</i>gene locus mimicking cancer profiles
Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C
- - (-) - [2023-04-06; online 2023-04-06]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Mucosal and Plasma Metabolomes in New-onset Paediatric Inflammatory Bowel Disease: Correlations with Disease Characteristics and Plasma Inflammation Protein Markers.
Nyström N, Prast-Nielsen S, Correia M, ..., Schuppe-Koistinen I, Halfvarson J
J Crohns Colitis 17 (3) 418-432 [2023-04-03; online 2022-10-12]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
IL-1 receptor-associated kinase-3 acts as an immune checkpoint in myeloid cells to limit cancer immunotherapy.
Tunalı G, Rúbies Bedós M, Nagarajan D, ..., Papakyriacou I, Mao Y
J. Clin. Invest. 133 (7) - [2023-04-03; online 2023-04-03]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Voices of the new generation: normalizing career choices outside academia.
Sezgin E
Nat. Rev. Mol. Cell Biol. 24 (4) 237 [2023-04-00; online 2023-01-20]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Gray matter hypoperfusion is a late pathological event in the course of Alzheimer's disease.
Ahmadi K, Pereira JB, Berron D, ..., Mutsaerts HJ, Hansson O
J. Cereb. Blood Flow Metab. 43 (4) 565-580 [2023-04-00; online 2022-11-22]
DDLS Fellow Jacob W Vogel
PubMed DOI Crossref
Dynamic antagonism between key repressive pathways maintains the placental epigenome.
Weigert R, Hetzel S, Bailly N, ..., Smith ZD, Meissner A
Nat. Cell Biol. 25 (4) 579-591 [2023-04-00; online 2023-04-06]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Deep mutational scan of a drug efflux pump reveals its structure-function landscape.
Meier G, Thavarasah S, Ehrenbolger K, ..., Barandun J, Seeger MA
Nat. Chem. Biol. 19 (4) 440-450 [2023-04-00; online 2022-11-28]
Jonas Barandun SciLifeLab Fellow
PubMed DOI Crossref
Clonal haematopoiesis and risk of chronic liver disease.
Wong WJ, Emdin C, Bick AG, ..., Ebert BL, Natarajan P
Nature 616 (7958) 747-754 [2023-04-00; online 2023-04-12]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
A frame-shift mutation in COMTD1 is associated with impaired pheomelanin pigmentation in chicken.
Bi H, Tranell J, Harper DC, ..., Globisch D, Andersson L
PLoS Genet 19 (4) e1010724 [2023-04-00; online 2023-04-17]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Do lipids tune B cell signaling?
Urbančič I, Eggeling C, Sezgin E
Nat. Chem. Biol. - (-) - [2023-03-30; online 2023-03-30]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Diverticulosis is not associated with altered gut microbiota nor is it predictive of future diverticulitis: a population-based colonoscopy study.
Alexandersson BT, Hugerth LW, Hedin C, ..., Andreasson A, Schmidt PT
Scand. J. Gastroenterol. 58 (10) 1131-1138 [2023-03-29; online 2023-03-29]
DDLS Fellow Luisa Hugerth
PubMed DOI Crossref
Linking prokaryotic genome size variation to metabolic potential and environment.
Rodríguez-Gijón A, Buck M, Andersson AF, ..., Nascimento FJA, Garcia SL
ISME Commun 3 (1) 25 [2023-03-27; online 2023-03-27]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
Correlative Chemical Imaging and Spatial Chemometrics Delineate Alzheimer Plaque Heterogeneity at High Spatial Resolution.
Wehrli PM, Ge J, Michno W, ..., Blennow K, Hanrieder J
JACS Au 3 (3) 762-774 [2023-03-27; online 2023-03-07]
SciLifeLab Fellow Wojciech Michno
PubMed DOI Crossref
Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.
Mutsuddy A, Erdem C, Huggins JR, ..., Feltus FA, Birtwistle MR
Bioinform Adv 3 (1) vbad039 [2023-03-23; online 2023-03-23]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes.
Tomaszkiewicz M, Sahlin K, Medvedev P, Makova KD
bioRxiv - (-) - [2023-03-18; online 2023-03-18]
Kristoffer Sahlin SciLifeLab Fellow
PubMed DOI Crossref
Phylogenetic Analysis of Allotetraploid Species Using Polarized Genomic Sequences.
Leal JL, Milesi P, Salojärvi J, Lascoux M
Syst. Biol. - (-) - [2023-03-18; online 2023-03-18]
Pascal Milesi SciLifeLab Fellow
DOI Crossref
MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets
Erdem C, Birtwistle MR
Front. Syst. Biol. 3 (-) - [2023-03-09; online 2023-03-09]
Cemal Erdem DDLS Fellow
PubMed DOI Crossref
Pre-pregnancy complications - associated factors and wellbeing in early pregnancy: a Swedish cohort study.
Gudnadottir U, Du J, Hugerth LW, ..., Fransson E, Brusselaers N
BMC Pregnancy Childbirth 23 (1) 153 [2023-03-08; online 2023-03-08]
DDLS Fellow Luisa Hugerth
PubMed DOI Crossref
Clonal Hematopoiesis and Risk of Incident Lung Cancer.
Tian R, Wiley B, Liu J, ..., Bolton KL, Cao Y
J Clin Oncol 41 (7) 1423-1433 [2023-03-01; online 2022-12-08]
Abhishek Niroula DDLS Fellow
PubMed DOI Crossref
Structural basis of mitochondrial membrane bending by the I-II-III2-IV2 supercomplex.
Mühleip A, Flygaard RK, Baradaran R, ..., Sharma V, Amunts A
Nature 615 (7954) 934-938 [2023-03-00; online 2023-03-22]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
PET Imaging of Neutrophil Elastase with 11C-GW457427 in Acute Respiratory Distress Syndrome in Pigs.
Puuvuori E, Chiodaroli E, Estrada S, ..., Eriksson O, Antoni G
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 64 (3) 423-429 [2023-03-00; online 2022-09-15]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
PCYT2-regulated lipid biosynthesis is critical to muscle health and ageing.
Cikes D, Elsayad K, Sezgin E, ..., Banka S, Penninger JM
Nat Metab 5 (3) 495-515 [2023-03-00; online 2023-03-20]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
A palmitate-rich metastatic niche enables metastasis growth via p65 acetylation resulting in pro-metastatic NF-κB signaling.
Altea-Manzano P, Doglioni G, Liu Y, ..., Malanchi I, Fendt SM
Nat Cancer 4 (3) 344-364 [2023-03-00; online 2023-02-02]
SciLifeLab Fellow Vicent Pelechano
DOI Crossref
Intraluminal neutrophils limit epithelium damage by reducing pathogen assault on intestinal epithelial cells during<i>Salmonella</i>gut infection
Gül E, Fattinger SA, Nguyen BD, ..., Sellin ME, Hardt WD
- - (-) - [2023-02-24; online 2023-02-24]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Reconstructing clonal tree for phylo-phenotypic characterization of cancer using single-cell transcriptomics.
Jun SH, Toosi H, Mold J, ..., Roth A, Lagergren J
Nat Commun 14 (1) 982 [2023-02-22; online 2023-02-22]
Camilla Engblom SciLifeLab Fellow
PubMed DOI Crossref
Not1 and Not4 inversely determine mRNA solubility that sets the dynamics of co-translational events.
Allen G, Weiss B, Panasenko OO, ..., Pelechano V, Collart MA
Genome Biol. 24 (1) 30 [2023-02-20; online 2023-02-20]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Differential regulation of mRNA stability modulates transcriptional memory and facilitates environmental adaptation.
Li B, Zeis P, Zhang Y, ..., Steinmetz LM, Pelechano V
Nat Commun 14 (1) 910 [2023-02-17; online 2023-02-17]
SciLifeLab Fellow Vicent Pelechano
DOI Crossref
Co-inhibition of topoisomerase 1 and BRD4-mediated pause release selectively kills pancreatic cancerviareadthrough transcription
Cameron DP, Grosser J, Ladigan S, ..., Hahn SA, Baranello L
- - (-) - [2023-02-12; online 2023-02-12]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
An α-π transition in S6 shapes the conformational cycle of the bacterial sodium channel NavAb.
Choudhury K, Howard RJ, Delemotte L
J. Gen. Physiol. 155 (2) - [2023-02-06; online 2022-12-14]
Lucie Delemotte SciLifeLab Fellow
DOI Crossref
Hybridization mediated range expansion and climate change resilience in two conifers
Karunarathne P, Zhou Q, Lascoux M, Milesi P
- - (-) - [2023-02-03; online 2023-02-03]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
[18F]MK-7246 for Positron Emission Tomography Imaging of the Beta-Cell Surface Marker GPR44.
Cheung P, Amin MA, Zhang B, ..., Odell LR, Eriksson O
Pharmaceutics 15 (2) - [2023-02-02; online 2023-02-02]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
High-content analysis shows synergistic effects of low perfluorooctanoic acid (PFOS) and perfluorooctane sulfonic acid (PFOA) mixture concentrations on human breast epithelial cell carcinogenesis.
Pierozan P, Kosnik M, Karlsson O
Environ Int 172 (-) 107746 [2023-02-00; online 2023-01-12]
Oskar Karlsson SciLifeLab Fellow
DOI Crossref
Diversity and enrichment of breeding material for resilience in European forests
Olsson S, Dauphin B, Jorge V, ..., Bastien C, Alia R
Forest Ecology and Management 530 (-) 120748 [2023-02-00; online 2023-02-00]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
Carnitine octanoyltransferase is important for the assimilation of exogenous acetyl-L-carnitine into acetyl-CoA in mammalian cells.
Hsu J, Fatuzzo N, Weng N, ..., Nasca C, Khosla C
J Biol Chem 299 (2) 102848 [2023-02-00; online 2022-12-30]
SciLifeLab Fellow Wojciech Michno
PubMed DOI Crossref
Editorial: Effects of hormonal contraceptives on the brain.
Pletzer B, Comasco E, Hidalgo-Lopez E, Lacreuse A, Derntl B
Front Endocrinol (Lausanne) 14 (-) 1129203 [2023-01-31; online 2023-01-31]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
TP53-mediated clonal hematopoiesis confers increased risk for incident atherosclerotic disease.
Zekavat SM, Viana-Huete V, Matesanz N, ..., Fuster JJ, Klarin D
Nat Cardiovasc Res 2 (-) 144-158 [2023-01-16; online 2023-03-24]
Abhishek Niroula DDLS Fellow
DOI Crossref
Synchronous effective population size changes and genetic stability of forest trees through glacial cycles
Milesi P, Kastally C, Dauphin B, ..., Pyhäjärvi T, None
- - (-) - [2023-01-06; online 2023-01-06]
Pascal Milesi SciLifeLab Fellow
PubMed DOI Crossref
In Vivo Visualization and Quantification of Neutrophil Elastase in Lungs of COVID-19 Patients: A First-in-Humans PET Study with 11C-NES.
Antoni G, Lubberink M, Sörensen J, ..., Skorup P, Lipcsey M
Journal of nuclear medicine : official publication, Society of Nuclear Medicine 64 (1) 145-148 [2023-01-00; online 2022-06-09]
Olof Eriksson SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.0