Publications 2016

688 publications

PubMed DOI Crossref
The Chd1 chromatin remodeler shifts hexasomes unidirectionally
Levendosky RF, Sabantsev A, Deindl S, Bowman GD
Elife 5 (-) - [2016-12-29; online 2016-12-29]
Affiliated researcher
PubMed DOI Crossref
Adaptive Evolution of Phosphorus Metabolism in Prochlorococcus
Casey JR, Mardinoglu A, Nielsen J, Karl DM
mSystems 1 (6) - [2016-12-27; online 2016-11-15]
Affiliated researcher
PubMed DOI Crossref
TGF-β Affects the Differentiation of Human GM-CSF
Éliás S, Schmidt A, Kannan V, Andersson J, Tegnér J
pmc
Front Immunol 7 (-) 603 [2016-12-23; online 2016-12-23]
Affiliated researcher
PubMed DOI Crossref
Production of individualized V gene databases reveals high levels of immunoglobulin genetic diversity.
Corcoran MM, Phad GE, Vázquez Bernat , ..., Martin M, Karlsson Hedestam GB
pmc
Nat Commun 7 (-) 13642 [2016-12-20; online 2016-12-20]
Affiliated researcher
PubMed DOI Crossref
FANCM c.5101C>T mutation associates with breast cancer survival and treatment outcome.
Kiiski JI, Fagerholm R, Tervasmäki A, ..., Blomqvist C, Nevanlinna H
pmc
Int. J. Cancer 139 (12) 2760-2770 [2016-12-15; online 2016-09-19]
Affiliated researcher
PubMed DOI Crossref
Transposon Mutagenesis Reveals Fludarabine Resistance Mechanisms in Chronic Lymphocytic Leukemia.
Pandzic T, Larsson J, He L, ..., Sjöblom T, Hellström M
Clin. Cancer Res. 22 (24) 6217-6227 [2016-12-15; online 2016-03-08]
Affiliated researcher
PubMed DOI Crossref
The protein phosphatase 2A regulatory subunit PR70 is a gonosomal melanoma tumor suppressor gene.
van Kempen LC, Redpath M, Elchebly M, ..., Feunteun J, Spatz A
Sci Transl Med 8 (369) 369ra177 [2016-12-14; online 2016-12-16]
Affiliated researcher
PubMed DOI Crossref
The In Vitro Stability of Circulating Tumour DNA.
Henao Diaz E, Yachnin J, Grönberg H, Lindberg J
pmc
PLoS ONE 11 (12) e0168153 [2016-12-13; online 2016-12-13]
Affiliated researcher
PubMed DOI Crossref
Clonal Variation in Drug and Radiation Response among Glioma-Initiating Cells Is Linked to Proneural-Mesenchymal Transition.
Segerman A, Niklasson M, Haglund C, ..., Segerman B, Westermark B
Cell Reports 17 (11) 2994-3009 [2016-12-13; online 2016-12-16]
Affiliated researcher
PubMed DOI Crossref
PDGFB, a new candidate plasma biomarker for venous thromboembolism: results from the VEREMA affinity proteomics study.
Bruzelius M, Iglesias MJ, Hong MG, ..., Trégouët DA, Odeberg J
Blood 128 (23) e59-e66 [2016-12-08; online 2016-10-14]
Affiliated researcher
PubMed DOI Crossref
Serum Autoantibody Profiling of Patients with Paraneoplastic and Non-Paraneoplastic Autoimmune Retinopathy.
Ten Berge JC, van Rosmalen J, Vermeer J, ..., Rothova A, Schreurs MW
pmc
PLoS ONE 11 (12) e0167909 [2016-12-08; online 2016-12-08]
Affiliated researcher
PubMed DOI Crossref
Frequent NFKBIE deletions are associated with poor outcome in primary mediastinal B-cell lymphoma.
Mansouri L, Noerenberg D, Young E, ..., Rosenquist R, Damm F
Blood 128 (23) 2666-2670 [2016-12-08; online 2016-09-26]
Affiliated researcher
PubMed DOI Crossref
Membrane Anchoring and Ion-Entry Dynamics in P-type ATPase Copper Transport.
Grønberg C, Sitsel O, Lindahl E, Gourdon P, Andersson M
pmc
Biophys. J. 111 (11) 2417-2429 [2016-12-06; online 2016-12-08]
Affiliated researcher
PubMed DOI Crossref
The Effect of Moment of Inertia on the Liquids in Centrifugal Microfluidics.
Pishbin E, Eghbal M, Fakhari S, Kazemzadeh A, Navidbakhsh M
pmc
Micromachines (Basel) 7 (12) - [2016-12-02; online 2016-12-02]
Affiliated researcher
PubMed DOI Crossref
Elucidating selection processes for antibiotic resistance in sewage treatment plants using metagenomics.
Bengtsson-Palme J, Hammarén R, Pal C, ..., Tysklind M, Larsson DGJ
Sci. Total Environ. 572 (-) 697-712 [2016-12-01; online 2016-08-17]
Affiliated researcher
PubMed DOI Crossref
The topogenic function of S4 promotes membrane insertion of the voltage-sensor domain in the KvAP channel.
Mishima E, Sato Y, Nanatani K, ..., Sakaguchi M, Uozumi N
Biochem. J. 473 (23) 4361-4372 [2016-12-01; online 2016-09-30]
Affiliated researcher
PubMed DOI Crossref
FARAO: the flexible all-round annotation organizer.
Hammarén R, Pal C, Bengtsson-Palme J
Bioinformatics 32 (23) 3664-3666 [2016-12-01; online 2016-08-04]
Affiliated researcher
PubMed DOI Crossref
Early Perspective.
Seashore-Ludlow B, Lundbäck T
J Biomol Screen 21 (10) 1019-1033 [2016-12-00; online 2016-07-20]
Affiliated researcher
DOI Crossref
Base sequence specificity of counterion binding to DNA: what can MD simulations tell us?
Atzori A, Liggi S, Laaksonen A, ..., Saba G, Mocci F
Can. J. Chem. 94 (12) 1181-1188 [2016-12-00; online 2016-12-00]
Affiliated researcher
PubMed DOI Crossref
Genome-wide analysis identifies 12 loci influencing human reproductive behavior.
Barban N, Jansen R, de Vlaming R, ..., Snieder H, Mills MC
pmc mid
Nat. Genet. 48 (12) 1462-1472 [2016-12-00; online 2016-10-31]
Affiliated researcher
PubMed DOI Crossref
Extended exome sequencing identifies BACH2 as a novel major risk locus for Addison's disease.
Eriksson D, Bianchi M, Landegren N, ..., Kämpe O, Pielberg GR
J. Intern. Med. 280 (6) 595-608 [2016-12-00; online 2016-11-02]
Affiliated researcher
PubMed DOI Crossref
ClpAP is an auxiliary protease for DnaA degradation inCaulobacter crescentus
Liu J, Francis LI, Jonas K, Laub MT, Chien P
Molecular Microbiology 102 (6) 1075-1085 [2016-12-00; online 2016-10-17]
Affiliated researcher
PubMed DOI Crossref
Heparanase Promotes Glioma Progression and Is Inversely Correlated with Patient Survival.
Kundu S, Xiong A, Spyrou A, ..., Li JP, Forsberg-Nilsson K
Mol. Cancer Res. 14 (12) 1243-1253 [2016-12-00; online 2016-08-26]
Affiliated researcher
PubMed DOI Crossref
Distribution and expression of microbial rhodopsins in the Baltic Sea and adjacent waters.
Brindefalk B, Ekman M, Ininbergs K, ..., Pinhassi J, Bergman B
Environ. Microbiol. 18 (12) 4442-4455 [2016-12-00; online 2016-07-14]
Affiliated researcher
PubMed DOI Crossref
Validation and development of MTH1 inhibitors for treatment of cancer.
Warpman Berglund U, Sanjiv K, Gad H, ..., Scobie M, Helleday T
Ann. Oncol. 27 (12) 2275-2283 [2016-12-00; online 2016-11-08]
Affiliated researcher
PubMed DOI Crossref
Novel genetic loci underlying human intracranial volume identified through genome-wide association.
Adams HH, Hibar DP, Chouraki V, ..., Ikram MA, Thompson PM
pmc mid
Nat. Neurosci. 19 (12) 1569-1582 [2016-12-00; online 2016-10-03]
Affiliated researcher
PubMed DOI Crossref
The disappearing San of southeastern Africa and their genetic affinities.
Schlebusch CM, Prins F, Lombard M, Jakobsson M, Soodyall H
pmc
Hum. Genet. 135 (12) 1365-1373 [2016-12-00; online 2016-09-20]
Affiliated researcher
PubMed DOI Crossref
Massive and parallel expression profiling using microarrayed single-cell sequencing
Vickovic S, Ståhl PL, Salmén F, ..., Frisén J, Lundeberg J
Nat Commun 7 (1) - [2016-12-00; online 2016-10-14]
Affiliated researcher
PubMed DOI Crossref
Exploring the oviductal fluid proteome by a lectin-based affinity approach.
Yu H, Reiser J, Besenfelder U, ..., Artemenko K, Mayrhofer C
Proteomics 16 (23) 2962-2966 [2016-12-00; online 2016-11-09]
Affiliated researcher
PubMed DOI Crossref
Squalene-hopene cyclases-evolution, dynamics and catalytic scope.
Syrén PO, Henche S, Eichler A, Nestl BM, Hauer B
Curr. Opin. Struct. Biol. 41 (-) 73-82 [2016-12-00; online 2016-06-20]
Affiliated researcher
PubMed DOI Crossref
DNA methylation patterns associated with oxidative stress in an ageing population.
Hedman ÅK, Zilmer M, Sundström J, Lind L, Ingelsson E
pmc
BMC Med Genomics 9 (1) 72 [2016-11-25; online 2016-11-25]
Affiliated researcher
PubMed DOI Crossref
The endosomal transcriptional regulator RNF11 integrates degradation and transport of EGFR.
Scharaw S, Iskar M, Ori A, ..., Bork P, Pepperkok R
pmc
J. Cell Biol. 215 (4) 543-558 [2016-11-21; online 2016-11-08]
Affiliated researcher
PubMed DOI Crossref
An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries.
Jemt A, Salmén F, Lundmark A, ..., Yucel-Lindberg T, Lundeberg J
pmc
Sci Rep 6 (-) 37137 [2016-11-16; online 2016-11-16]
Affiliated researcher
PubMed DOI Crossref
Periostin is identified as a putative metastatic marker in breast cancer-derived exosomes.
Vardaki I, Ceder S, Rutishauser D, ..., Foukakis T, Panaretakis T
pmc
Oncotarget 7 (46) 74966-74978 [2016-11-15; online 2016-09-03]
Affiliated researcher
PubMed DOI Crossref
Targeted high-throughput sequencing of candidate genes for chronic obstructive pulmonary disease.
Matsson H, Söderhäll C, Einarsdottir E, ..., Lundbäck B, Klar J
pmc
BMC Pulm Med 16 (1) 146 [2016-11-11; online 2016-11-11]
Affiliated researcher
PubMed DOI Crossref
Probabilistic inference of lateral gene transfer events.
Khan MA, Mahmudi O, Ullah I, Arvestad L, Lagergren J
pmc
BMC Bioinformatics 17 (Suppl 14) 431 [2016-11-11; online 2016-11-11]
Affiliated researcher
PubMed DOI Crossref
Cohort profile: the Finnish Genetics of Pre-eclampsia Consortium (FINNPEC).
Jääskeläinen T, Heinonen S, Kajantie E, ..., Laivuori H, FINNPEC Study Group
pmc
BMJ Open 6 (11) e013148 [2016-11-10; online 2016-11-10]
Affiliated researcher
PubMed DOI Crossref
The stem osteichthyan Andreolepis and the origin of tooth replacement.
Chen D, Blom H, Sanchez S, Tafforeau P, Ahlberg PE
Nature 539 (7628) 237-241 [2016-11-10; online 2016-10-17]
Affiliated researcher
PubMed DOI Crossref
Immunohistochemical Typing of Adenocarcinomas of the Pancreatobiliary System Improves Diagnosis and Prognostic Stratification.
Fernández Moro C, Fernandez-Woodbridge A, Alistair D'souza M, ..., Verbeke C, Bozóky B
pmc
PLoS ONE 11 (11) e0166067 [2016-11-09; online 2016-11-09]
Affiliated researcher
PubMed DOI Crossref
Case-specific potentiation of glioblastoma drugs by pterostilbene.
Schmidt L, Baskaran S, Johansson P, ..., Krona C, Nelander S
pmc
Oncotarget 7 (45) 73200-73215 [2016-11-08; online 2016-10-01]
Affiliated researcher
PubMed DOI Crossref
Clonal B-cell lymphocytosis of marginal zone origin.
Xochelli A, Oscier D, Stamatopoulos K
Best Pract Res Clin Haematol 30 (1-2) 77-83 [2016-11-04; online 2016-11-04]
Affiliated researcher
PubMed DOI Crossref
Looking for Missing Proteins in the Proteome of Human Spermatozoa: An Update.
Vandenbrouck Y, Lane L, Carapito C, ..., Garin J, Pineau C
J. Proteome Res. 15 (11) 3998-4019 [2016-11-04; online 2016-08-23]
Affiliated researcher
PubMed DOI Crossref
Maps of context-dependent putative regulatory regions and genomic signal interactions.
Diamanti K, Umer HM, Kruczyk M, ..., Wadelius C, Komorowski J
pmc
Nucleic Acids Res. 44 (19) 9110-9120 [2016-11-02; online 2016-09-12]
Affiliated researcher
DOI Crossref
Methane oxidation at the water-ice interface of an ice-covered lake
Ricão Canelhas M, Denfeld BA, Weyhenmeyer GA, Bastviken D, Bertilsson S
Limnol. Oceanogr. 61 (S1) S78-S90 [2016-11-00; online 2016-03-29]
Affiliated researcher
PubMed DOI Crossref
Amy2B copy number variation reveals starch diet adaptations in ancient European dogs.
Ollivier M, Tresset A, Bastian F, ..., Hitte C, Hänni C
pmc
R Soc Open Sci 3 (11) 160449 [2016-11-00; online 2016-11-09]
Affiliated researcher
PubMed DOI Crossref
Screening out irrelevant cell-based models of disease.
Horvath P, Aulner N, Bickle M, ..., von Schantz C, Carragher NO
Nat Rev Drug Discov 15 (11) 751-769 [2016-11-00; online 2016-09-12]
Affiliated researcher
PubMed DOI Crossref
Migratory activation of parasitized dendritic cells by the protozoan Toxoplasma gondii 14-3-3 protein.
Weidner JM, Kanatani S, Uchtenhagen H, ..., Achour A, Barragan A
pmc mid
Cell. Microbiol. 18 (11) 1537-1550 [2016-11-00; online 2016-05-06]
Affiliated researcher
PubMed DOI Crossref
The H3 chaperone function of NASP is conserved in Arabidopsis.
Maksimov V, Nakamura M, Wildhaber T, ..., Bergquist J, Hennig L
Plant J. 88 (3) 425-436 [2016-11-00; online 2016-09-15]
Affiliated researcher
PubMed DOI Crossref
Long-term outcome in young women with breast cancer: a population-based study.
Fredholm H, Magnusson K, Lindström LS, ..., Frisell J, Fredriksson I
pmc
Breast Cancer Res. Treat. 160 (1) 131-143 [2016-11-00; online 2016-09-13]
Affiliated researcher
PubMed DOI Crossref
Synaptic proteins predict cognitive decline in Alzheimer's disease and Lewy body dementia.
Bereczki E, Francis PT, Howlett D, ..., Ballard C, Aarsland D
Alzheimers Dement 12 (11) 1149-1158 [2016-11-00; online 2016-05-22]
Affiliated researcher
PubMed DOI Crossref
Genome-wide repression of eRNA and target gene loci by the ETV6-RUNX1 fusion in acute leukemia.
Teppo S, Laukkanen S, Liuksiala T, ..., Heinäniemi M, Lohi O
pmc
Genome Res. 26 (11) 1468-1477 [2016-11-00; online 2016-09-12]
Affiliated researcher
PubMed DOI Crossref
Inferring Past Effective Population Size from Distributions of Coalescent Times.
Gattepaille L, Günther T, Jakobsson M
pmc
Genetics 204 (3) 1191-1206 [2016-11-00; online 2016-09-16]
Affiliated researcher
PubMed DOI Crossref
Diet adaptation in dog reflects spread of prehistoric agriculture.
Arendt M, Cairns KM, Ballard JW, Savolainen P, Axelsson E
pmc
Heredity (Edinb) 117 (5) 301-306 [2016-11-00; online 2016-07-13]
Affiliated researcher
PubMed DOI Crossref
Genomic disruption of the histone methyltransferase SETD2 in chronic lymphocytic leukaemia.
Parker H, Rose-Zerilli MJ, Larrayoz M, ..., Oscier DG, Strefford JC
pmc mid
Leukemia 30 (11) 2179-2186 [2016-11-00; online 2016-05-20]
Affiliated researcher
PubMed DOI Crossref
The two Dps proteins, NpDps2 and NpDps5, are involved in light-induced oxidative stress tolerance in the N
Moparthi VK, Li X, Vavitsas K, ..., Magnuson A, Stensjö K
Biochim. Biophys. Acta 1857 (11) 1766-1776 [2016-11-00; online 2016-08-12]
Affiliated researcher
PubMed DOI Crossref
Rawcopy: Improved copy number analysis with Affymetrix arrays.
Mayrhofer M, Viklund B, Isaksson A
pmc
Sci Rep 6 (-) 36158 [2016-10-31; online 2016-10-31]
Affiliated researcher
PubMed DOI Crossref
Thermodynamics of Nanobody Binding to Lactose Permease.
Hariharan P, Andersson M, Jiang X, ..., Kaback HR, Guan L
Biochemistry 55 (42) 5917-5926 [2016-10-25; online 2016-10-12]
Affiliated researcher
PubMed DOI Crossref
Structure-Based Screening of Uncharted Chemical Space for Atypical Adenosine Receptor Agonists
Rodríguez D, Chakraborty S, Warnick E, ..., Jacobson KA, Carlsson J
ACS Chem. Biol. 11 (10) 2763-2772 [2016-10-21; online 2016-08-22]
Affiliated researcher
PubMed DOI Crossref
Gene-specific correlation of RNA and protein levels in human cells and tissues.
Edfors F, Danielsson F, Hallström BM, ..., Forsström B, Uhlén M
pmc
Mol Syst Biol 12 (10) 883 [2016-10-20; online 2016-10-20]
Affiliated researcher
PubMed DOI Crossref
Binding of Pollutants to Biomolecules: A Simulation Study.
Yildirim A, Zhang J, Manzetti S, van der Spoel D
Chem. Res. Toxicol. 29 (10) 1679-1688 [2016-10-17; online 2016-09-13]
Affiliated researcher
PubMed DOI Crossref
FBW7 suppression leads to SOX9 stabilization and increased malignancy in medulloblastoma.
Suryo Rahmanto A, Savov V, Brunner A, ..., Swartling FJ, Sangfelt O
pmc
EMBO J. 35 (20) 2192-2212 [2016-10-17; online 2016-09-13]
Affiliated researcher
PubMed DOI Crossref
Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.
Bagnoud A, Chourey K, Hettich RL, ..., Schwyn B, Bernier-Latmani R
pmc
Nat Commun 7 (-) 12770 [2016-10-14; online 2016-10-14]
Affiliated researcher
PubMed DOI Crossref
Hydrophobic Clusters Raise the Threshold Hydrophilicity for Insertion of Transmembrane Sequences in Vivo.
Stone TA, Schiller N, Workewych N, von Heijne G, Deber CM
Biochemistry 55 (40) 5772-5779 [2016-10-11; online 2016-09-29]
Affiliated researcher
PubMed DOI Crossref
Single-Cell Transcriptome Profiling of Human Pancreatic Islets in Health and Type 2 Diabetes.
Segerstolpe Å, Palasantza A, Eliasson P, ..., Ämmälä C, Sandberg R
pmc
Cell Metab. 24 (4) 593-607 [2016-10-11; online 2016-09-22]
Affiliated researcher
PubMed DOI Crossref
Multidimensional Normalization to Minimize Plate Effects of Suspension Bead Array Data.
Hong MG, Lee W, Nilsson P, Pawitan Y, Schwenk JM
J. Proteome Res. 15 (10) 3473-3480 [2016-10-07; online 2016-09-12]
Affiliated researcher
PubMed DOI Crossref
Molecular Diversity of Midbrain Development in Mouse, Human, and Stem Cells.
La Manno G, Gyllborg D, Codeluppi S, ..., Arenas E, Linnarsson S
pmc
Cell 167 (2) 566-580.e19 [2016-10-06; online 2016-10-08]
Affiliated researcher
PubMed DOI Crossref
Systems Toxicology: Systematic Approach to Predict Toxicity.
Kiani NA, Shang MM, Tegner J
Curr. Pharm. Des. 22 (46) 6911-6917 [2016-10-05; online 2016-10-05]
Affiliated researcher
PubMed DOI Crossref
ProQ3: Improved model quality assessments using Rosetta energy terms.
Uziela K, Shu N, Wallner B, Elofsson A
pmc
Sci Rep 6 (-) 33509 [2016-10-04; online 2016-10-04]
Affiliated researcher
PubMed DOI Crossref
The human PRD-like homeobox gene LEUTX has a central role in embryo genome activation.
Jouhilahti EM, Madissoon E, Vesterlund L, ..., Katayama S, Kere J
pmc
Development 143 (19) 3459-3469 [2016-10-01; online 2016-08-30]
Affiliated researcher
PubMed DOI Crossref
Soluble CD93 Is Involved in Metabolic Dysregulation but Does Not Influence Carotid Intima-Media Thickness.
Strawbridge RJ, Hilding A, Silveira A, ..., Bäcklund A, IMPROVE Study Group
pmc
Diabetes 65 (10) 2888-2899 [2016-10-00; online 2016-09-24]
Affiliated researcher
PubMed DOI Crossref
Whole-Exome Sequencing Suggests LAMB3 as a Susceptibility Gene for Morbid Obesity.
Jiao H, Kulyté A, Näslund E, ..., Arner P, Dahlman I
Diabetes 65 (10) 2980-2989 [2016-10-00; online 2016-07-18]
Affiliated researcher
PubMed DOI Crossref
DNA methylome analysis of acute lymphoblastic leukemia cells reveals stochastic de novo DNA methylation in CpG islands.
Wahlberg P, Lundmark A, Nordlund J, ..., Lönnerholm G, Syvänen AC
Epigenomics 8 (10) 1367-1387 [2016-10-00; online 2016-08-23]
Affiliated researcher
PubMed DOI Crossref
Mechanisms and regulation of endothelial VEGF receptor signalling.
Simons M, Gordon E, Claesson-Welsh L
Nat. Rev. Mol. Cell Biol. 17 (10) 611-625 [2016-10-00; online 2016-07-27]
Affiliated researcher
PubMed DOI Crossref
Biophysics in drug discovery: impact, challenges and opportunities.
Renaud JP, Chung CW, Danielson UH, ..., Hubbard RE, Nar H
Nat Rev Drug Discov 15 (10) 679-698 [2016-10-00; online 2016-08-12]
Affiliated researcher
PubMed DOI Crossref
Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.
Hubalek V, Wu X, Eiler A, ..., Bertilsson S, Ionescu D
pmc
ISME J 10 (10) 2447-2458 [2016-10-00; online 2016-03-29]
Affiliated researcher
PubMed DOI Crossref
Cost-effectiveness of pharmacogenetic-guided dosing of warfarin in the United Kingdom and Sweden.
Verhoef TI, Redekop WK, Langenskiold S, ..., Hughes DA, Pirmohamed M
Pharmacogenomics J. 16 (5) 478-484 [2016-10-00; online 2016-06-07]
Affiliated researcher
PubMed DOI Crossref
A proposal for validation of antibodies.
Uhlen M, Bandrowski A, Carr S, ..., Snyder M, Yamamoto T
Nat. Methods 13 (10) 823-827 [2016-10-00; online 2016-09-05]
Affiliated researcher
PubMed DOI Crossref
Effects of multiple dimensions of bacterial diversity on functioning, stability and multifunctionality.
Roger F, Bertilsson S, Langenheder S, Osman OA, Gamfeldt L
Ecology 97 (10) 2716-2728 [2016-10-00; online 2016-09-15]
Affiliated researcher
PubMed DOI Crossref
Elevated Basal Insulin Secretion in Type 2 Diabetes Caused by Reduced Plasma Membrane Cholesterol.
Nagaraj V, Kazim AS, Helgeson J, ..., Zhang E, Renström E
pmc
Mol. Endocrinol. 30 (10) 1059-1069 [2016-10-00; online 2016-08-17]
Affiliated researcher
PubMed DOI Crossref
Autoantibodies Targeting a Collecting Duct-Specific Water Channel in Tubulointerstitial Nephritis.
Landegren N, Pourmousa Lindberg M, Skov J, ..., Fenton RA, Kämpe O
pmc
J. Am. Soc. Nephrol. 27 (10) 3220-3228 [2016-10-00; online 2016-03-16]
Affiliated researcher
PubMed DOI Crossref
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Mülleder M, Calvani E, Alam MT, ..., Zelezniak A, Ralser M
Cell 167 (2) 553-565.e12 [2016-10-00; online 2016-10-00]
Fellow
PubMed DOI Crossref
Mutations in HECW2 are associated with intellectual disability and epilepsy.
Halvardson J, Zhao JJ, Zaghlool A, ..., Thuresson AC, Feuk L
pmc
J. Med. Genet. 53 (10) 697-704 [2016-10-00; online 2016-06-22]
Affiliated researcher
PubMed DOI Crossref
Metabolomic Quality Assessment of EDTA Plasma and Serum Samples.
Malm L, Tybring G, Moritz T, Landin B, Galli J
Biopreserv Biobank 14 (5) 416-423 [2016-10-00; online 2016-06-27]
Affiliated researcher
PubMed DOI Crossref
Analysis of Body-wide Unfractionated Tissue Data to Identify a Core Human Endothelial Transcriptome.
Butler LM, Hallström BM, Fagerberg L, ..., Renné T, Odeberg J
Cell Systems 3 (3) 287-301.e3 [2016-09-28; online 2016-09-15]
Affiliated researcher
PubMed DOI Crossref
Exploration of high-density protein microarrays for antibody validation and autoimmunity profiling.
Sjöberg R, Mattsson C, Andersson E, ..., Ayoglu B, Nilsson P
N Biotechnol 33 (5 Pt A) 582-592 [2016-09-25; online 2015-09-28]
Affiliated researcher
PubMed DOI Crossref
A global genetic interaction network maps a wiring diagram of cellular function
Costanzo M, VanderSluis B, Koch EN, ..., Andrews B, Boone C
Science 353 (6306) aaf1420-aaf1420 [2016-09-23; online 2016-09-22]
Affiliated researcher
PubMed DOI Crossref
RNA-binding motif protein 47 inhibits Nrf2 activity to suppress tumor growth in lung adenocarcinoma.
Sakurai T, Isogaya K, Sakai S, ..., Miyazono K, Koinuma D
pmc
Oncogene 35 (38) 5000-5009 [2016-09-22; online 2016-02-29]
Affiliated researcher
PubMed DOI Crossref
Multiplexed, targeted profiling of single-cell proteomes and transcriptomes in a single reaction.
Genshaft AS, Li S, Gallant CJ, ..., Landegren U, Shalek AK
pmc
Genome Biol. 17 (1) 188 [2016-09-19; online 2016-09-19]
Affiliated researcher
PubMed DOI Crossref
Functional and Structural Consequences of Nine
de Paula Michelatto D, Karlsson L, Lusa AL, ..., de Mello MP, Lajic S
pmc
Int J Endocrinol 2016 (-) 4209670 [2016-09-19; online 2016-09-19]
Affiliated researcher
PubMed DOI Crossref
Life history of the stem tetrapod Acanthostega revealed by synchrotron microtomography.
Sanchez S, Tafforeau P, Clack JA, Ahlberg PE
Nature 537 (7620) 408-411 [2016-09-15; online 2016-09-07]
Affiliated researcher
PubMed DOI Crossref
XMetDB: an open access database for xenobiotic metabolism.
Spjuth O, Rydberg P, Willighagen EL, Evelo CT, Jeliazkova N
pmc
J Cheminform 8 (-) 47 [2016-09-15; online 2016-09-15]
Affiliated researcher
PubMed DOI Crossref
NUDT15 Hydrolyzes 6-Thio-DeoxyGTP to Mediate the Anticancer Efficacy of 6-Thioguanine.
Valerie NC, Hagenkort A, Page BD, ..., Jemth AS, Helleday T
Cancer Res. 76 (18) 5501-5511 [2016-09-15; online 2016-08-16]
Affiliated researcher
PubMed DOI Crossref
IL-15 activates mTOR and primes stress-activated gene expression leading to prolonged antitumor capacity of NK cells.
Mao Y, van Hoef V, Zhang X, ..., Kiessling R, Lundqvist A
pmc
Blood 128 (11) 1475-1489 [2016-09-15; online 2016-07-27]
Affiliated researcher
PubMed DOI Crossref
Analysis with the exome array identifies multiple new independent variants in lipid loci.
Kanoni S, Masca NG, Stirrups KE, ..., Samani NJ, Deloukas P
pmc
Hum. Mol. Genet. 25 (18) 4094-4106 [2016-09-15; online 2016-07-27]
Affiliated researcher
PubMed DOI Crossref
Targeting the kinase activities of ATR and ATM exhibits antitumoral activity in mouse models of MLL-rearranged AML.
Morgado-Palacin I, Day A, Murga M, ..., Nussenzweig A, Fernandez-Capetillo O
pmc mid
Sci Signal 9 (445) ra91 [2016-09-13; online 2016-09-13]
Affiliated researcher
PubMed DOI Crossref
Efficacy of ATR inhibitors as single agents in Ewing sarcoma.
Nieto-Soler M, Morgado-Palacin I, Lafarga V, ..., Nussenzweig A, Fernandez-Capetillo O
pmc
Oncotarget 7 (37) 58759-58767 [2016-09-13; online 2016-09-01]
Affiliated researcher
PubMed DOI Crossref
Regulation of myeloid cells by activated T cells determines the efficacy of PD-1 blockade.
Eissler N, Mao Y, Brodin D, ..., Kiessling R, Kogner P
pmc
Oncoimmunology 5 (12) e1232222 [2016-09-09; online 2016-09-09]
Affiliated researcher
DOI Crossref
The helical structure of DNA facilitates binding
Berg OG, Mahmutovic A, Marklund E, Elf J
J. Phys. A: Math. Theor. 49 (36) 364002 [2016-09-09; online 2016-08-16]
Affiliated researcher
PubMed DOI Crossref
Enhancing Endosomal Escape for Intracellular Delivery of Macromolecular Biologic Therapeutics.
Lönn P, Kacsinta AD, Cui XS, ..., Gogoi K, Dowdy SF
pmc
Sci Rep 6 (-) 32301 [2016-09-08; online 2016-09-08]
Affiliated researcher
PubMed DOI Crossref
NDST2 (N-Deacetylase/N-Sulfotransferase-2) Enzyme Regulates Heparan Sulfate Chain Length.
Deligny A, Dierker T, Dagälv A, ..., Merry CLR, Kjellén L
pmc
J. Biol. Chem. 291 (36) 18600-18607 [2016-09-02; online 2016-07-07]
Affiliated researcher
PubMed DOI Crossref
Benchmarking the next generation of homology inference tools.
Saripella GV, Sonnhammer EL, Forslund K
pmc
Bioinformatics 32 (17) 2636-2641 [2016-09-01; online 2016-06-01]
Affiliated researcher
PubMed DOI Crossref
A novel variant in MYLK causes thoracic aortic dissections: genotypic and phenotypic description.
Hannuksela M, Stattin EL, Klar J, ..., Sörensen K, Carlberg B
pmc
BMC Med. Genet. 17 (1) 61 [2016-09-01; online 2016-09-01]
Affiliated researcher
PubMed DOI Crossref
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization.
Ammad-Ud-Din M, Khan SA, Malani D, ..., Aittokallio T, Kaski S
Bioinformatics 32 (17) i455-i463 [2016-09-01; online 2016-09-03]
Affiliated researcher
PubMed DOI Crossref
POLD3 Is Haploinsufficient for DNA Replication in Mice.
Murga M, Lecona E, Kamileri I, ..., Halazonetis TD, Fernandez-Capetillo O
pmc mid
Mol. Cell 63 (5) 877-883 [2016-09-01; online 2016-08-11]
Affiliated researcher
PubMed DOI Crossref
Trans-ethnic Fine Mapping Highlights Kidney-Function Genes Linked to Salt Sensitivity.
Mahajan A, Rodan AR, Le TH, ..., Morris AP, Franceschini N
pmc
Am. J. Hum. Genet. 99 (3) 636-646 [2016-09-01; online 2016-09-03]
Affiliated researcher
PubMed DOI Crossref
The Impact of Endurance Training on Human Skeletal Muscle Memory, Global Isoform Expression and Novel Transcripts.
Lindholm ME, Giacomello S, Werne Solnestam B, ..., Kjellqvist S, Sundberg CJ
pmc
PLoS Genet 12 (9) e1006294 [2016-09-00; online 2016-09-22]
Affiliated researcher
PubMed DOI Crossref
Human macrophages induce CD4(+)Foxp3(+) regulatory T cells via binding and re-release of TGF-β.
Schmidt A, Zhang XM, Joshi RN, ..., Harris RA, Tegnér J
Immunol. Cell Biol. 94 (8) 747-762 [2016-09-00; online 2016-05-10]
Affiliated researcher
PubMed DOI Crossref
Repeated LPS Injection Induces Distinct Changes in the Kynurenine Pathway in Mice.
Larsson MK, Faka A, Bhat M, ..., Schwieler L, Erhardt S
Neurochem. Res. 41 (9) 2243-2255 [2016-09-00; online 2016-05-10]
Affiliated researcher
PubMed DOI Crossref
Tissue microarray profiling in human heart failure.
Lal S, Nguyen L, Tezone R, ..., Li A, Dos Remedios C
Proteomics 16 (17) 2319-2326 [2016-09-00; online 2016-08-11]
Affiliated researcher
DOI Crossref
Microscale decoupling of sediment oxygen consumption and microbial biomass in an oligotrophic lake
Jeske JT, Müller RA, Wendeberg A, Bertilsson S
Freshw Biol 61 (9) 1477-1491 [2016-09-00; online 2016-06-17]
Affiliated researcher
PubMed DOI Crossref
Is low molecular weight hyaluronan an early indicator of disease in avian systemic sclerosis?
Kerje S, Hellman U, Do L, ..., Engström-Laurent A, Lindqvist U
Connect. Tissue Res. 57 (5) 337-346 [2016-09-00; online 2016-05-02]
Affiliated researcher
PubMed DOI Crossref
Conformation Traits and Gaits in the Icelandic Horse are Associated with Genetic Variants in Myostatin (MSTN).
François L, Jäderkvist Fegraeus K, Eriksson S, ..., Lindgren G, Velie BD
J. Hered. 107 (5) 431-437 [2016-09-00; online 2016-05-13]
Affiliated researcher
PubMed DOI Crossref
Clinical impact of recurrently mutated genes on lymphoma diagnostics: state-of-the-art and beyond.
Rosenquist R, Rosenwald A, Du MQ, ..., Stamatopoulos K, European Research Initiative on CLL (ERIC) and the European Association for Haematopathology (EAHP)
pmc
Haematologica 101 (9) 1002-1009 [2016-09-00; online 2016-09-02]
Affiliated researcher
PubMed DOI Crossref
A Role for the Chromatin-Remodeling Factor BAZ1A in Neurodevelopment.
Zaghlool A, Halvardson J, Zhao JJ, ..., Thuresson AC, Feuk L
Hum. Mutat. 37 (9) 964-975 [2016-09-00; online 2016-07-08]
Affiliated researcher
PubMed DOI Crossref
A Rickettsiales symbiont of amoebae with ancient features.
Schulz F, Martijn J, Wascher F, ..., Ettema TJ, Horn M
Environ. Microbiol. 18 (8) 2326-2342 [2016-09-00; online 2015-06-05]
Affiliated researcher
PubMed DOI Crossref
Protein profiles of CCL5, HPGDS, and NPSR1 in plasma reveal association with childhood asthma.
Hamsten C, Häggmark A, Grundström J, ..., Nilsson P, van Hage M
Allergy 71 (9) 1357-1361 [2016-09-00; online 2016-05-25]
Affiliated researcher
PubMed DOI Crossref
Autoantibody targets in vaccine-associated narcolepsy.
Häggmark-Månberg A, Zandian A, Forsström B, ..., Olsson T, Nilsson P
Autoimmunity 49 (6) 421-433 [2016-09-00; online 2016-05-20]
Affiliated researcher
PubMed DOI Crossref
Origin of the U87MG glioma cell line: Good news and bad news.
Allen M, Bjerke M, Edlund H, Nelander S, Westermark B
Sci Transl Med 8 (354) 354re3 [2016-08-31; online 2016-09-02]
Affiliated researcher
PubMed DOI Crossref
Cystatin C and Cardiovascular Disease: A Mendelian Randomization Study.
van der Laan SW, Fall T, Soumaré A, ..., Holmes MV, Asselbergs FW
pmc mid
J. Am. Coll. Cardiol. 68 (9) 934-945 [2016-08-30; online 2016-08-27]
Affiliated researcher
PubMed DOI Crossref
The Adipose Transcriptional Response to Insulin Is Determined by Obesity, Not Insulin Sensitivity.
Rydén M, Hrydziuszko O, Mileti E, ..., Daub CO, Arner P
Cell Reports 16 (9) 2317-2326 [2016-08-30; online 2016-08-18]
Affiliated researcher
PubMed DOI Crossref
An RGS2 3'UTR polymorphism is associated with preeclampsia in overweight women.
Karppanen T, Kaartokallio T, Klemetti MM, ..., Staff AC, Laivuori H
pmc
BMC Genet. 17 (1) 121 [2016-08-24; online 2016-08-24]
Affiliated researcher
PubMed DOI Crossref
The Competing Mechanisms of Phosphate Monoester Dianion Hydrolysis.
Duarte F, Barrozo A, Åqvist J, Williams NH, Kamerlin SC
pmc
J. Am. Chem. Soc. 138 (33) 10664-10673 [2016-08-24; online 2016-08-15]
Affiliated researcher
PubMed DOI Crossref
Enantioselective Organocatalyzed Transformations of β-Ketoesters.
Govender T, Arvidsson PI, Maguire GE, Kruger HG, Naicker T
Chem. Rev. 116 (16) 9375-9437 [2016-08-24; online 2016-07-27]
Affiliated researcher
PubMed DOI Crossref
Visualizing the Nonhomogeneous Structure of RAD51 Filaments Using Nanofluidic Channels.
Fornander LH, Frykholm K, Fritzsche J, ..., Modesti M, Westerlund F
Langmuir 32 (33) 8403-8412 [2016-08-23; online 2016-08-12]
Affiliated researcher
PubMed DOI Crossref
Ras and TGF-β signaling enhance cancer progression by promoting the ΔNp63 transcriptional program.
Vasilaki E, Morikawa M, Koinuma D, ..., Miyazono K, Heldin CH
Sci Signal 9 (442) ra84 [2016-08-23; online 2016-08-23]
Affiliated researcher
PubMed DOI Crossref
Label-free detection of real-time DNA amplification using a nanofluidic diffraction grating.
Yasui T, Ogawa K, Kaji N, ..., Horiike Y, Baba Y
pmc
Sci Rep 6 (-) 31642 [2016-08-17; online 2016-08-17]
Affiliated researcher
PubMed DOI Crossref
Metastasis Stimulation by Hypoxia and Acidosis-Induced Extracellular Lipid Uptake Is Mediated by Proteoglycan-Dependent Endocytosis.
Menard JA, Christianson HC, Kucharzewska P, ..., Johansson MC, Belting M
Cancer Res. 76 (16) 4828-4840 [2016-08-15; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
Multiplex PCB-based electrochemical detection of cancer biomarkers using MLPA-barcode approach.
Sánchez JL, Henry OY, Joda H, ..., Riley I, O'Sullivan CK
Biosens Bioelectron 82 (-) 224-232 [2016-08-15; online 2016-04-07]
Affiliated researcher
PubMed DOI Crossref
Global profiling of SRP interaction with nascent polypeptides.
Schibich D, Gloge F, Pöhner I, ..., Bukau B, Kramer G
Nature 536 (7615) 219-223 [2016-08-11; online 2016-08-03]
Affiliated researcher
PubMed DOI Crossref
Stratification of responders towards eculizumab using a structural epitope mapping strategy.
Volk AL, Hu FJ, Berglund MM, ..., Uhlen M, Rockberg J
pmc
Sci Rep 6 (-) 31365 [2016-08-11; online 2016-08-11]
Affiliated researcher
PubMed DOI Crossref
Large-scale ligand-based predictive modelling using support vector machines.
Alvarsson J, Lampa S, Schaal W, ..., Wikberg JE, Spjuth O
pmc
J Cheminform 8 (-) 39 [2016-08-10; online 2016-08-10]
Affiliated researcher
PubMed DOI Crossref
Role of Conserved Gly-Gly Pairs on the Periplasmic Side of LacY.
Jiang X, Andersson M, Chau BT, ..., Villafuerte MK, Kaback HR
pmc mid
Biochemistry 55 (31) 4326-4332 [2016-08-09; online 2016-08-01]
Affiliated researcher
PubMed DOI Crossref
A genome-wide screening uncovers the role of CCAR2 as an antagonist of DNA end resection.
López-Saavedra A, Gómez-Cabello D, Domínguez-Sánchez MS, ..., Bartek J, Huertas P
pmc
Nat Commun 7 (-) 12364 [2016-08-09; online 2016-08-09]
Affiliated researcher
PubMed DOI Crossref
Stromal Hedgehog signalling is downregulated in colon cancer and its restoration restrains tumour growth.
Gerling M, Büller NV, Kirn LM, ..., van den Brink GR, Toftgård R
pmc
Nat Commun 7 (-) 12321 [2016-08-05; online 2016-08-05]
Affiliated researcher
PubMed DOI Crossref
Integration of a Droplet-Based Microfluidic System and Silicon Nanoribbon FET Sensor.
Afrasiabi R, Soderberg LM, Joensson HN, ..., Andersson Svahn H, Linnros J
pmc
Micromachines (Basel) 7 (8) - [2016-08-05; online 2016-08-05]
Affiliated researcher
PubMed DOI Crossref
The genetic architecture of type 2 diabetes.
Fuchsberger C, Flannick J, Teslovich TM, ..., Altshuler D, McCarthy MI
pmc mid
Nature 536 (7614) 41-47 [2016-08-04; online 2016-07-11]
Affiliated researcher
PubMed DOI Crossref
The chaperone co-inducer BGP-15 alleviates ventilation-induced diaphragm dysfunction.
Salah H, Li M, Cacciani N, ..., Salviati L, Larsson L
Sci Transl Med 8 (350) 350ra103 [2016-08-03; online 2016-08-05]
Affiliated researcher
PubMed DOI Crossref
Tumor-Induced NETosis as a Risk Factor for Metastasis and Organ Failure.
Cedervall J, Zhang Y, Olsson AK
Cancer Res. 76 (15) 4311-4315 [2016-08-01; online 2016-07-11]
Affiliated researcher
PubMed DOI Crossref
Adaptation to different types of stress converge on mitochondrial metabolism.
Lahtvee PJ, Kumar R, Hallström BM, Nielsen J
pmc
Mol. Biol. Cell 27 (15) 2505-2514 [2016-08-01; online 2016-06-15]
Affiliated researcher
PubMed DOI Crossref
Profilin connects actin assembly with microtubule dynamics.
Nejedla M, Sadi S, Sulimenko V, ..., Aspenström P, Karlsson R
pmc
Mol. Biol. Cell 27 (15) 2381-2393 [2016-08-01; online 2016-06-15]
Affiliated researcher
PubMed DOI Crossref
Simulated single molecule microscopy with SMeagol.
Lindén M, Ćurić V, Boucharin A, Fange D, Elf J
pmc
Bioinformatics 32 (15) 2394-2395 [2016-08-01; online 2016-03-04]
Affiliated researcher
PubMed DOI Crossref
TreeDom: a graphical web tool for analysing domain architecture evolution.
Haider C, Kavic M, Sonnhammer EL
Bioinformatics 32 (15) 2384-2385 [2016-08-01; online 2016-03-12]
Affiliated researcher
PubMed DOI Crossref
NF-κB activation in chronic lymphocytic leukemia: A point of convergence of external triggers and intrinsic lesions.
Mansouri L, Papakonstantinou N, Ntoufa S, Stamatopoulos K, Rosenquist R
Semin. Cancer Biol. 39 (-) 40-48 [2016-08-00; online 2016-08-01]
Affiliated researcher
PubMed DOI Crossref
Initial hyperinsulinemia and subsequent β-cell dysfunction is associated with elevated palmitate levels.
Staaf J, Ubhayasekera SJ, Sargsyan E, ..., Forslund A, Bergsten P
Pediatr. Res. 80 (2) 267-274 [2016-08-00; online 2016-04-11]
Affiliated researcher
PubMed DOI Crossref
Impact of ocean acidification on antimicrobial activity in gills of the blue mussel (Mytilus edulis).
Hernroth B, Baden S, Tassidis H, ..., Bergström Lind S, Bergquist J
Fish Shellfish Immunol. 55 (-) 452-459 [2016-08-00; online 2016-06-08]
Affiliated researcher
PubMed DOI Crossref
Acoustic micro-vortexing of fluids, particles and cells in disposable microfluidic chips.
Iranmanesh I, Ohlin M, Ramachandraiah H, ..., Russom A, Wiklund M
pmc
Biomed Microdevices 18 (4) 71 [2016-08-00; online 2016-07-23]
Affiliated researcher
PubMed DOI Crossref
Neuroprotective potential of Linezolid: a quantitative and distribution study via mass spectrometry.
Baijnath S, Shobo A, Bester LA, ..., Naicker T, Govender T
J. Mol. Histol. 47 (4) 429-435 [2016-08-00; online 2016-06-21]
Affiliated researcher
PubMed DOI Crossref
Tuning fresh: radiation through rewiring of central metabolism in streamlined bacteria.
Eiler A, Mondav R, Sinclair L, ..., Woyke T, Bertilsson S
pmc
ISME J 10 (8) 1902-1914 [2016-08-00; online 2016-01-19]
Affiliated researcher
PubMed DOI Crossref
Different spectra of recurrent gene mutations in subsets of chronic lymphocytic leukemia harboring stereotyped B-cell receptors.
Sutton LA, Young E, Baliakas P, ..., Rosenquist R, ERIC, the European Research Initiative on CLL
pmc
Haematologica 101 (8) 959-967 [2016-08-00; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
A Longitudinal Follow-up of Autoimmune Polyendocrine Syndrome Type 1.
Bruserud Ø, Oftedal BE, Landegren N, ..., Wolff AB, Husebye ES
pmc
J. Clin. Endocrinol. Metab. 101 (8) 2975-2983 [2016-08-00; online 2016-06-02]
Affiliated researcher
PubMed DOI Crossref
Pathways controlling dNTP pools to maintain genome stability.
Rudd SG, Valerie NCK, Helleday T
DNA Repair (Amst.) 44 (-) 193-204 [2016-08-00; online 2016-05-28]
Affiliated researcher
PubMed DOI Crossref
SATB2 is expressed in Merkel cell carcinoma.
Fukuhara M, Agnarsdóttir M, Edqvist PH, Coter A, Ponten F
Arch. Dermatol. Res. 308 (6) 449-454 [2016-08-00; online 2016-06-04]
Affiliated researcher
PubMed DOI Crossref
Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae
Hatorangan MR, Laenen B, Steige KA, Slotte T, Köhler C
Plant Cell 28 (8) 1815-1827 [2016-08-00; online 2016-07-27]
Affiliated researcher
PubMed DOI Crossref
Otopalatodigital spectrum disorders: refinement of the phenotypic and mutational spectrum.
Moutton S, Fergelot P, Naudion S, ..., Goizet C, Coupry I
J. Hum. Genet. 61 (8) 693-699 [2016-08-00; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
Coordinated disassembly of the divisome complex in Escherichia coli.
Söderström B, Mirzadeh K, Toddo S, ..., Skoglund U, Daley DO
Mol. Microbiol. 101 (3) 425-438 [2016-08-00; online 2016-05-23]
Affiliated researcher
PubMed DOI Crossref
IFN-γ Hinders Recovery from Mucosal Inflammation during Antibiotic Therapy for Salmonella Gut Infection
Dolowschiak T, Mueller AA, Pisan LJ, ..., Mueller C, Hardt WD
Cell Host & Microbe 20 (2) 238-249 [2016-08-00; online 2016-08-00]
Fellow
PubMed DOI Crossref
Novel regulatory variant detected on the VKORC1 haplotype that is associated with warfarin dose.
Cavalli M, Pan G, Nord H, ..., Wadelius C, Wadelius M
Pharmacogenomics 17 (12) 1305-1314 [2016-08-00; online 2016-02-05]
Affiliated researcher
PubMed DOI Crossref
Evidence for genetic regulation of the human parieto-occipital 10-Hz rhythmic activity.
Salmela E, Renvall H, Kujala J, ..., Salmelin R, Kere J
pmc
Eur. J. Neurosci. 44 (3) 1963-1971 [2016-08-00; online 2016-07-04]
Affiliated researcher
PubMed DOI Crossref
The Synchronization of Replication and Division Cycles in Individual E. coli Cells.
Wallden M, Fange D, Lundius EG, Baltekin Ö, Elf J
Cell 166 (3) 729-739 [2016-07-28; online 2016-07-30]
Affiliated researcher
PubMed DOI Crossref
Human cytomegalovirus may promote tumour progression by upregulating arginase-2.
Costa H, Xu X, Overbeek G, ..., Söderberg-Naucler C, Yaiw KC
pmc
Oncotarget 7 (30) 47221-47231 [2016-07-26; online 2016-07-01]
Affiliated researcher
PubMed DOI Crossref
Identification of meat products by shotgun spectral matching.
Ohana D, Dalebout H, Marissen RJ, ..., Deelder AM, Palmblad M
Food Chem 203 (-) 28-34 [2016-07-15; online 2016-02-02]
Affiliated researcher
PubMed DOI Crossref
Cloche is a bHLH-PAS transcription factor that drives haemato-vascular specification.
Reischauer S, Stone OA, Villasenor A, ..., Andersson O, Stainier DY
Nature 535 (7611) 294-298 [2016-07-14; online 2016-07-15]
Affiliated researcher
PubMed DOI Crossref
Avidity characterization of genetically engineered T-cells with novel and established approaches.
Hillerdal V, Boura VF, Björkelund H, Andersson K, Essand M
pmc
BMC Immunol. 17 (1) 23 [2016-07-13; online 2016-07-13]
Affiliated researcher
PubMed DOI Crossref
Human serum-derived protein removes the need for coating in defined human pluripotent stem cell culture.
Pijuan-Galitó S, Tamm C, Schuster J, ..., Merry CL, Annerén C
pmc
Nat Commun 7 (-) 12170 [2016-07-13; online 2016-07-13]
Affiliated researcher
PubMed DOI Crossref
Mendelian randomisation analysis strongly implicates adiposity with risk of developing colorectal cancer.
Jarvis D, Mitchell JS, Law PJ, ..., Tomlinson IP, Houlston RS
pmc
Br. J. Cancer 115 (2) 266-272 [2016-07-12; online 2016-06-23]
Affiliated researcher
PubMed DOI Crossref
Local Adaptation in European Firs Assessed through Extensive Sampling across Altitudinal Gradients in Southern Europe.
Brousseau L, Postolache D, Lascoux M, ..., Fady B, Vendramin GG
pmc
PLoS ONE 11 (7) e0158216 [2016-07-08; online 2016-07-08]
Affiliated researcher
PubMed DOI Crossref
PathwAX: a web server for network crosstalk based pathway annotation.
Ogris C, Helleday T, Sonnhammer EL
pmc
Nucleic Acids Res. 44 (W1) W105-W109 [2016-07-08; online 2016-05-05]
Affiliated researcher
PubMed DOI Crossref
Exome sequencing in pooled DNA samples to identify maternal pre-eclampsia risk variants.
Kaartokallio T, Wang J, Heinonen S, ..., Kere J, Laivuori H
pmc
Sci Rep 6 (-) 29085 [2016-07-07; online 2016-07-07]
Affiliated researcher
PubMed DOI Crossref
Identifying Genetic Signatures of Natural Selection Using Pooled Population Sequencing in Picea abies.
Chen J, Källman T, Ma XF, ..., Morgante M, Lascoux M
pmc
G3 6 (7) 1979-1989 [2016-07-07; online 2016-07-07]
Affiliated researcher
PubMed DOI Crossref
Estrogen receptor beta reduces colon cancer metastasis through a novel miR-205 - PROX1 mechanism.
Nguyen-Vu T, Wang J, Mesmar F, ..., Bondesson M, Williams C
pmc
Oncotarget 7 (27) 42159-42171 [2016-07-05; online 2016-06-11]
Affiliated researcher
PubMed DOI Crossref
Survival-associated heterogeneity of marker-defined perivascular cells in colorectal cancer.
Mezheyeuski A, Bradic Lindh M, Guren TK, ..., Sorbye H, Östman A
pmc
Oncotarget 7 (27) 41948-41958 [2016-07-05; online 2016-06-02]
Affiliated researcher
PubMed DOI Crossref
Assembly scaffolding with PE-contaminated mate-pair libraries.
Sahlin K, Chikhi R, Arvestad L
Bioinformatics 32 (13) 1925-1932 [2016-07-01; online 2016-03-02]
Affiliated researcher
PubMed DOI Crossref
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.
Ståhl PL, Salmén F, Vickovic S, ..., Lundeberg J, Frisén J
Science 353 (6294) 78-82 [2016-07-01; online 2016-07-02]
Affiliated researcher
PubMed DOI Crossref
Klinefelter's syndrome (47,XXY) is in excess among men with Sjögren's syndrome.
Harris VM, Sharma R, Cavett J, ..., Sivils KL, Scofield RH
pmc mid
Clin. Immunol. 168 (-) 25-29 [2016-07-00; online 2016-04-22]
Affiliated researcher
PubMed DOI Crossref
Antagonists of IGF:Vitronectin Interactions Inhibit IGF-I-Induced Breast Cancer Cell Functions.
Kashyap AS, Shooter GK, Shokoohmand A, ..., Upton Z, Hollier BG
Mol. Cancer Ther. 15 (7) 1602-1613 [2016-07-00; online 2016-05-09]
Affiliated researcher
PubMed DOI Crossref
Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing.
Galanos P, Vougas K, Walter D, ..., Bartek J, Gorgoulis VG
Nat. Cell Biol. 18 (7) 777-789 [2016-07-00; online 2016-06-20]
Affiliated researcher
PubMed DOI Crossref
Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations.
Bendall ML, Stevens SL, Chan LK, ..., McMahon KD, Malmstrom RR
pmc
ISME J 10 (7) 1589-1601 [2016-07-00; online 2016-01-08]
Affiliated researcher
PubMed DOI Crossref
Corticolimbic anatomical characteristics predetermine risk for chronic pain.
Vachon-Presseau E, Tétreault P, Petre B, ..., Baliki MN, Apkarian AV
pmc
Brain 139 (Pt 7) 1958-1970 [2016-07-00; online 2016-05-05]
Affiliated researcher
DOI Crossref
Constraints on methane oxidation in ice-covered boreal lakes
Denfeld BA, Ricão Canelhas M, Weyhenmeyer GA, ..., Eiler A, Bastviken D
J. Geophys. Res. Biogeosci. 121 (7) 1924-1933 [2016-07-00; online 2016-07-22]
Affiliated researcher
PubMed DOI Crossref
Regulation of the TGF-β pathway by deubiquitinases in cancer.
Liu S, de Boeck M, van Dam H, Ten Dijke P
Int. J. Biochem. Cell Biol. 76 (-) 135-145 [2016-07-00; online 2016-05-04]
Affiliated researcher
PubMed DOI Crossref
Chronic kidney disease and 10-year risk of cardiovascular death.
Holzmann MJ, Carlsson AC, Hammar N, ..., Wändell P, Ärnlöv J
Eur J Prev Cardiol 23 (11) 1187-1194 [2016-07-00; online 2015-11-05]
Affiliated researcher
PubMed DOI Crossref
Conformational diversity and enantioconvergence in potato epoxide hydrolase 1.
Bauer P, Carlsson ÅJ, Amrein BA, ..., Widersten M, Kamerlin SC
pmc
Org. Biomol. Chem. 14 (24) 5639-5651 [2016-06-28; online 2016-04-06]
Affiliated researcher
PubMed DOI Crossref
Heparanase expression upregulates platelet adhesion activity and thrombogenicity.
Cui H, Tan YX, Österholm C, ..., Vlodavsky I, Li JP
pmc
Oncotarget 7 (26) 39486-39496 [2016-06-28; online 2016-10-26]
Affiliated researcher
PubMed DOI Crossref
An NK Cell Perforin Response Elicited via IL-18 Controls Mucosal Inflammation Kinetics during Salmonella Gut Infection
Müller AA, Dolowschiak T, Sellin ME, ..., LeibundGut-Landmann S, Hardt WD
PLoS Pathog 12 (6) e1005723 [2016-06-24; online 2016-06-24]
Fellow
PubMed DOI Crossref
Cryptosporidium as a testbed for single cell genome characterization of unicellular eukaryotes.
Troell K, Hallström B, Divne AM, ..., Beser J, Bertilsson S
pmc
BMC Genomics 17 (-) 471 [2016-06-23; online 2016-06-23]
Affiliated researcher
PubMed DOI Crossref
Genetic heterogeneity in primary and relapsed mantle cell lymphomas: Impact of recurrent CARD11 mutations.
Wu C, de Miranda NF, Chen L, ..., Sander B, Pan-Hammarström Q
pmc
Oncotarget 7 (25) 38180-38190 [2016-06-21; online 2016-10-23]
Affiliated researcher
PubMed DOI Crossref
iGEMS: an integrated model for identification of alternative exon usage events.
Sood S, Szkop KJ, Nakhuda A, ..., Larsson O, Timmons JA
pmc
Nucleic Acids Res. 44 (11) e109 [2016-06-20; online 2016-04-19]
Affiliated researcher
PubMed DOI Crossref
Identification of Cancer Related Genes Using a Comprehensive Map of Human Gene Expression.
Torrente A, Lukk M, Xue V, ..., Rung J, Brazma A
pmc
PLoS ONE 11 (6) e0157484 [2016-06-20; online 2016-06-20]
Affiliated researcher
PubMed DOI Crossref
Effects of Fluoxetine on Human Embryo Development.
Kaihola H, Yaldir FG, Hreinsson J, ..., Åkerud H, Sundström-Poromaa I
pmc
Front. Cell. Neurosci. 10 (-) 160 [2016-06-16; online 2016-06-16]
Affiliated researcher
PubMed DOI Crossref
Read-based phasing of related individuals.
Garg S, Martin M, Marschall T
pmc
Bioinformatics 32 (12) i234-i242 [2016-06-15; online 2016-06-17]
Affiliated researcher
PubMed DOI Crossref
Protein Z: A putative novel biomarker for early detection of ovarian cancer.
Russell MR, Walker MJ, Williamson AJ, ..., Jacobs I, Graham RL
pmc
Int. J. Cancer 138 (12) 2984-2992 [2016-06-15; online 2016-02-19]
Affiliated researcher
PubMed DOI Crossref
The histone methyltransferase EZH2 as a novel prosurvival factor in clinically aggressive chronic lymphocytic leukemia.
Papakonstantinou N, Ntoufa S, Chartomatsidou E, ..., Rosenquist R, Stamatopoulos K
pmc
Oncotarget 7 (24) 35946-35959 [2016-06-14; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
Tumor acidosis enhances cytotoxic effects and autophagy inhibition by salinomycin on cancer cell lines and cancer stem cells.
Pellegrini P, Dyczynski M, Sbrana FV, ..., Kharaziha P, De Milito A
pmc
Oncotarget 7 (24) 35703-35723 [2016-06-14; online 2016-06-02]
Affiliated researcher
PubMed DOI Crossref
Regulation of Bone Morphogenetic Protein Signaling by ADP-ribosylation.
Watanabe Y, Papoutsoglou P, Maturi V, ..., Heldin CH, Moustakas A
pmc PDB
J. Biol. Chem. 291 (24) 12706-12723 [2016-06-10; online 2016-04-21]
Affiliated researcher
PubMed DOI Crossref
Reciprocal voltage sensor-to-pore coupling leads to potassium channel C-type inactivation.
Conti L, Renhorn J, Gabrielsson A, ..., Lindahl E, Elinder F
pmc
Sci Rep 6 (-) 27562 [2016-06-09; online 2016-06-09]
Affiliated researcher
PubMed DOI Crossref
Recommendations on e-infrastructures for next-generation sequencing.
Spjuth O, Bongcam-Rudloff E, Dahlberg J, ..., Vezzi F, Korpelainen E
pmc
Gigascience 5 (-) 26 [2016-06-07; online 2016-06-07]
Affiliated researcher
PubMed DOI Crossref
Genetic Basis for Red Coloration in Birds.
Lopes RJ, Johnson JD, Toomey MB, ..., Corbo JC, Carneiro M
pmc mid
Curr. Biol. 26 (11) 1427-1434 [2016-06-06; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
A comparative evaluation of data-merging and meta-analysis methods for reconstructing gene-gene interactions.
Lagani V, Karozou AD, Gomez-Cabrero D, Silberberg G, Tsamardinos I
pmc
BMC Bioinformatics 17 Suppl 5 (-) 194 [2016-06-06; online 2016-06-06]
Affiliated researcher
PubMed DOI Crossref
Elevated levels of FN1 and CCL2 in bronchoalveolar lavage fluid from sarcoidosis patients.
Hamsten C, Wiklundh E, Grönlund H, ..., Grunewald J, Häggmark-Månberg A
pmc
Respir. Res. 17 (1) 69 [2016-06-04; online 2016-06-04]
Affiliated researcher
PubMed DOI Crossref
TT-seq maps the human transient transcriptome.
Schwalb B, Michel M, Zacher B, ..., Gagneur J, Cramer P
Science 352 (6290) 1225-1228 [2016-06-03; online 2016-06-04]
Affiliated researcher
PubMed DOI Crossref
Prognostic impact of epigenetic classification in chronic lymphocytic leukemia: The case of subset #2.
Bhoi S, Ljungström V, Baliakas P, ..., Rosenquist R, Mansouri L
pmc
Epigenetics 11 (6) 449-455 [2016-06-02; online 2016-04-29]
Affiliated researcher
PubMed DOI Crossref
Mosaic Loss of Chromosome Y in Blood Is Associated with Alzheimer Disease.
Dumanski JP, Lambert JC, Rasi C, ..., Lind L, Forsberg LA
pmc
Am. J. Hum. Genet. 98 (6) 1208-1219 [2016-06-02; online 2016-05-23]
Affiliated researcher
PubMed DOI Crossref
c-Myb Enhances Breast Cancer Invasion and Metastasis through the Wnt/β-Catenin/Axin2 Pathway.
Li Y, Jin K, van Pelt GW, ..., Zhou F, Zhang L
Cancer Res. 76 (11) 3364-3375 [2016-06-01; online 2016-04-05]
Affiliated researcher
PubMed DOI Crossref
Epigenome-wide DNA methylation patterns associated with fatigue in primary Sjögren's syndrome.
Brække Norheim K, Imgenberg-Kreuz J, Jonsdottir K, ..., Nordmark G, Omdal R
Rheumatology (Oxford) 55 (6) 1074-1082 [2016-06-00; online 2016-03-10]
Affiliated researcher
PubMed DOI Crossref
Identification of Multiple Loci Associated with Social Parasitism in Honeybees.
Wallberg A, Pirk CW, Allsopp MH, Webster MT
pmc
PLoS Genet 12 (6) e1006097 [2016-06-00; online 2016-06-09]
Affiliated researcher
PubMed DOI Crossref
High density of REC8 constrains sister chromatid axes and prevents illegitimate synaptonemal complex formation.
Agostinho A, Manneberg O, van Schendel R, ..., Brismar H, Höög C
pmc
EMBO Rep. 17 (6) 901-913 [2016-06-00; online 2016-05-11]
Affiliated researcher
PubMed DOI Crossref
Affinity proteomics discovers decreased levels of AMFR in plasma from Osteoporosis patients.
Qundos U, Drobin K, Mattsson C, ..., Michaëlsson K, Schwenk JM
pmc
Proteomics Clin Appl 10 (6) 681-690 [2016-06-00; online 2015-04-21]
Affiliated researcher
PubMed DOI Crossref
GPR44 is a pancreatic protein restricted to the human beta cell.
Hellström-Lindahl E, Danielsson A, Ponten F, ..., Johansson L, Eriksson O
Acta Diabetol 53 (3) 413-421 [2016-06-00; online 2015-10-14]
Affiliated researcher
PubMed DOI Crossref
Detection of Biomarkers with Solid-Phase Proximity Ligation Assay in Patients with Colorectal Cancer.
Ghanipour L, Darmanis S, Landegren U, ..., Påhlman L, Birgisson H
pmc
Transl Oncol 9 (3) 251-255 [2016-06-00; online 2016-06-09]
Affiliated researcher
PubMed DOI Crossref
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.
Foote AD, Vijay N, Ávila-Arcos MC, ..., Gilbert MT, Wolf JB
pmc
Nat Commun 7 (-) 11693 [2016-05-31; online 2016-05-31]
Affiliated researcher
PubMed DOI Crossref
Variants within the SP110 nuclear body protein modify risk of canine degenerative myelopathy.
Ivansson EL, Megquier K, Kozyrev SV, ..., Coates JR, Lindblad-Toh K
pmc GENBANK GENBANK
Proc. Natl. Acad. Sci. U.S.A. 113 (22) E3091-E3100 [2016-05-31; online 2016-05-16]
Affiliated researcher
PubMed DOI Crossref
New technologies for DNA analysis--a review of the READNA Project.
McGinn S, Bauer D, Brefort T, ..., Willcocks JP, Gut IG
N Biotechnol 33 (3) 311-330 [2016-05-25; online 2015-10-26]
Affiliated researcher
PubMed DOI Crossref
The mitogenome of a 35,000-year-old Homo sapiens from Europe supports a Palaeolithic back-migration to Africa.
Hervella M, Svensson EM, Alberdi A, ..., Netea MG, de-la-Rua C
pmc
Sci Rep 6 (-) 25501 [2016-05-19; online 2016-05-19]
Affiliated researcher
PubMed DOI Crossref
Functional interplay between MSL1 and CDK7 controls RNA polymerase II Ser5 phosphorylation
Chlamydas S, Holz H, Samata M, ..., Steinmetz LM, Akhtar A
Nat Struct Mol Biol 23 (6) 580-589 [2016-05-16; online 2016-05-16]
Affiliated researcher
PubMed DOI Crossref
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins.
Hayat S, Peters C, Shu N, Tsirigos KD, Elofsson A
Bioinformatics 32 (10) 1571-1573 [2016-05-15; online 2016-01-21]
Affiliated researcher
PubMed DOI Crossref
Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States
Rudolph KLM, Schmitt BM, Villar D, ..., Kutter C, Odom DT
PLoS Genet 12 (5) e1006024 [2016-05-11; online 2016-05-11]
Affiliated researcher
PubMed DOI Crossref
The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons
García-Martínez J, Delgado-Ramos L, Ayala G, ..., Chávez S, Pérez-Ortín JE
Nucleic Acids Res 44 (8) 3643-3658 [2016-05-05; online 2015-12-29]
Fellow
PubMed DOI Crossref
The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing.
Martinez Barrio A, Lamichhaney S, Fan G, ..., Xu X, Andersson L
pmc
Elife 5 (-) - [2016-05-03; online 2016-05-03]
Affiliated researcher
PubMed DOI Crossref
Standardized benchmarking in the quest for orthologs.
Altenhoff AM, Boeckmann B, Capella-Gutierrez S, ..., Sonnhammer E, Dessimoz C
pmc mid
Nat. Methods 13 (5) 425-430 [2016-05-00; online 2016-04-04]
Affiliated researcher
PubMed DOI Crossref
Antigen arrays for profiling autoantibody repertoires.
Ayoglu B, Schwenk JM, Nilsson P
Bioanalysis 8 (10) 1105-1126 [2016-05-00; online 2016-04-21]
Affiliated researcher
PubMed DOI Crossref
Rpb1 foot mutations demonstrate a major role of Rpb4 in mRNA stability during stress situations in yeast
Garrido-Godino AI, García-López MC, García-Martínez J, ..., Pérez-Ortín JE, Navarro F
Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 1859 (5) 731-743 [2016-05-00; online 2016-05-00]
Affiliated researcher
PubMed DOI Crossref
Genome-Wide Analysis Identifies Germ-Line Risk Factors Associated with Canine Mammary Tumours.
Melin M, Rivera P, Arendt M, ..., Rönnberg H, Lindblad-Toh K
pmc
PLoS Genet 12 (5) e1006029 [2016-05-00; online 2016-05-09]
Affiliated researcher
PubMed DOI Crossref
Selection of optimal chelator improves the contrast of GRPR imaging using bombesin analogue RM26.
Mitran B, Varasteh Z, Selvaraju RK, ..., Rosenström U, Orlova A
Int. J. Oncol. 48 (5) 2124-2134 [2016-05-00; online 2016-03-09]
Affiliated researcher
PubMed DOI Crossref
Gap Filling as Exact Path Length Problem.
Salmela L, Sahlin K, Mäkinen V, Tomescu AI
J. Comput. Biol. 23 (5) 347-361 [2016-05-00; online 2016-03-09]
Affiliated researcher
PubMed DOI Crossref
Increased diversification rates follow shifts to bisexuality in liverworts.
Laenen B, Machac A, Gradstein SR, ..., Shaw AJ, Vanderpoorten A
GENBANK
New Phytol. 210 (3) 1121-1129 [2016-05-00; online 2016-02-01]
Affiliated researcher
PubMed DOI Crossref
An Improved microRNA Annotation of the Canine Genome.
Penso-Dolfin L, Swofford R, Johnson J, ..., Moxon S, Di Palma F
pmc
PLoS ONE 11 (4) e0153453 [2016-04-27; online 2016-04-27]
Affiliated researcher
PubMed DOI Crossref
Elevated Levels of SOX10 in Serum from Vitiligo and Melanoma Patients, Analyzed by Proximity Ligation Assay.
Blokzijl A, Chen LE, Gustafsdottir SM, ..., Kamali-Moghaddam M, Hedstrand H
pmc
PLoS ONE 11 (4) e0154214 [2016-04-25; online 2016-04-25]
Affiliated researcher
DOI Crossref
Effects of warming on a Mediterranean phytoplankton community
Pulina S, Brutemark A, Suikkanen S, ..., Sechi N, Lugliè A
Web Ecol. 16 (1) 89-92 [2016-04-22; online 2016-04-22]
Affiliated researcher
PubMed DOI Crossref
A Genome-wide CRISPR Screen Identifies CDC25A as a Determinant of Sensitivity to ATR Inhibitors.
Ruiz S, Mayor-Ruiz C, Lafarga V, ..., Ortega S, Fernandez-Capetillo O
pmc mid
Mol. Cell 62 (2) 307-313 [2016-04-21; online 2016-04-07]
Affiliated researcher
PubMed DOI Crossref
An Immunogenetic Signature of Ongoing Antigen Interactions in Splenic Marginal Zone Lymphoma Expressing IGHV1-2*04 Receptors.
Bikos V, Karypidou M, Stalika E, ..., Hadzidimitriou A, Stamatopoulos K
Clin. Cancer Res. 22 (8) 2032-2040 [2016-04-15; online 2015-12-08]
Affiliated researcher
PubMed DOI Crossref
Hypoxic Signaling and the Cellular Redox Tumor Environment Determine Sensitivity to MTH1 Inhibition.
Bräutigam L, Pudelko L, Jemth AS, ..., Stenmark P, Helleday T
Cancer Res. 76 (8) 2366-2375 [2016-04-15; online 2016-02-09]
Affiliated researcher
PubMed DOI Crossref
Improved topology prediction using the terminal hydrophobic helices rule.
Peters C, Tsirigos KD, Shu N, Elofsson A
Bioinformatics 32 (8) 1158-1162 [2016-04-15; online 2015-12-07]
Affiliated researcher
PubMed DOI Crossref
Cytosolic splice isoform of Hsp70 nucleotide exchange factor Fes1 is required for the degradation of misfolded proteins in yeast
Gowda NKC, Kaimal JM, Masser AE, ..., Friedländer MR, Andréasson C
MBoC 27 (8) 1210-1219 [2016-04-15; online 2016-04-15]
Affiliated researcher
PubMed DOI Crossref
RING finger protein 31 promotes p53 degradation in breast cancer cells.
Zhu J, Zhao C, Zhuang T, ..., Strömblad S, Dahlman-Wright K
pmc
Oncogene 35 (15) 1955-1964 [2016-04-14; online 2015-07-06]
Affiliated researcher
PubMed DOI Crossref
Immunostimulatory AdCD40L gene therapy combined with low-dose cyclophosphamide in metastatic melanoma patients.
Loskog A, Maleka A, Mangsbo S, ..., Tötterman TH, Ullenhag G
pmc
Br. J. Cancer 114 (8) 872-880 [2016-04-12; online 2016-03-31]
Affiliated researcher
PubMed DOI Crossref
Microchip Screening Platform for Single Cell Assessment of NK Cell Cytotoxicity.
Guldevall K, Brandt L, Forslund E, ..., Uhlin M, Önfelt B
pmc
Front Immunol 7 (-) 119 [2016-04-05; online 2016-04-05]
Affiliated researcher
PubMed DOI Crossref
mTORC1 and CK2 coordinate ternary and eIF4F complex assembly.
Gandin V, Masvidal L, Cargnello M, ..., Larsson O, Topisirovic I
pmc
Nat Commun 7 (-) 11127 [2016-04-04; online 2016-04-04]
Affiliated researcher
PubMed DOI Crossref
3D Bioprinting of Tissue/Organ Models.
Pati F, Gantelius J, Svahn HA
Angew. Chem. Int. Ed. Engl. 55 (15) 4650-4665 [2016-04-04; online 2016-02-19]
Affiliated researcher
PubMed DOI Crossref
Transcriptomics resources of human tissues and organs.
Uhlén M, Hallström BM, Lindskog C, ..., Pontén F, Nielsen J
pmc
Mol Syst Biol 12 (4) 862 [2016-04-04; online 2016-04-04]
Affiliated researcher Fellow
PubMed DOI Crossref
Genome-wide association and Mendelian randomization study of NT-proBNP in patients with acute coronary syndrome.
Johansson Å, Eriksson N, Lindholm D, ..., Wallentin L, PLATO Investigators
ClinicalTrials.gov
Hum. Mol. Genet. 25 (7) 1447-1456 [2016-04-01; online 2016-01-21]
Affiliated researcher
PubMed DOI Crossref
Signals and Receptors.
Heldin CH, Lu B, Evans R, Gutkind JS
pmc
Cold Spring Harbor Perspectives in Biology 8 (4) a005900 [2016-04-01; online 2016-04-01]
Affiliated researcher
PubMed DOI Crossref
Na+-K+-ATPase, a new class of plasma membrane receptors.
Aperia A, Akkuratov EE, Fontana JM, Brismar H
Am. J. Physiol., Cell Physiol. 310 (7) C491-C495 [2016-04-01; online 2016-01-20]
Affiliated researcher
PubMed DOI Crossref
CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array.
Marzouka NA, Nordlund J, Bäcklin CL, ..., Syvänen AC, Carlsson Almlöf J
pmc
Bioinformatics 32 (7) 1080-1082 [2016-04-01; online 2015-11-09]
Affiliated researcher
PubMed DOI Crossref
Prognostic indices in chronic lymphocytic leukaemia: where do we stand how do we proceed?
Baliakas P, Mattsson M, Stamatopoulos K, Rosenquist R
J. Intern. Med. 279 (4) 347-357 [2016-04-00; online 2015-12-28]
Affiliated researcher
PubMed DOI Crossref
Motor neuron-like NSC-34 cells as a new model for the study of vitamin D metabolism in the brain.
Almokhtar M, Wikvall K, Ubhayasekera SJKA, Bergquist J, Norlin M
J. Steroid Biochem. Mol. Biol. 158 (-) 178-188 [2016-04-00; online 2015-12-15]
Affiliated researcher
PubMed DOI Crossref
The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons.
Braasch I, Gehrke AR, Smith JJ, ..., Lindblad-Toh K, Postlethwait JH
pmc mid
Nat. Genet. 48 (4) 427-437 [2016-04-00; online 2016-03-07]
Affiliated researcher
PubMed DOI Crossref
Multiplexed protein profiling by sequential affinity capture.
Ayoglu B, Birgersson E, Mezger A, ..., Nilsson P, Schwenk JM
pmc
Proteomics 16 (8) 1251-1256 [2016-04-00; online 2016-03-31]
Affiliated researcher
PubMed DOI Crossref
NgR1: A Tunable Sensor Regulating Memory Formation, Synaptic, and Dendritic Plasticity.
Karlsson TE, Smedfors G, Brodin AT, ..., Brené S, Olson L
pmc
Cereb. Cortex 26 (4) 1804-1817 [2016-04-00; online 2016-02-02]
Affiliated researcher
PubMed DOI Crossref
A multiple-phenotype imputation method for genetic studies.
Dahl A, Iotchkova V, Baud A, ..., Kranis A, Marchini J
pmc mid
Nat. Genet. 48 (4) 466-472 [2016-04-00; online 2016-02-22]
Affiliated researcher
PubMed DOI Crossref
USP7 is a SUMO deubiquitinase essential for DNA replication.
Lecona E, Rodriguez-Acebes S, Specks J, ..., Mendez J, Fernandez-Capetillo O
pmc mid
Nat. Struct. Mol. Biol. 23 (4) 270-277 [2016-04-00; online 2016-03-07]
Affiliated researcher
PubMed DOI Crossref
The inflammatory inception of gallbladder cancer.
Espinoza JA, Bizama C, García P, ..., Koshiol J, Roa JC
Biochim. Biophys. Acta 1865 (2) 245-254 [2016-04-00; online 2016-03-12]
Affiliated researcher
PubMed DOI Crossref
Evolutionary Origins of Rhizarian Parasites
Sierra R, Cañas-Duarte SJ, Burki F, ..., Arzul I, Pawlowski J
Molecular Biology and Evolution 33 (4) 980-983 [2016-04-00; online 2015-12-16]
Fellow
PubMed DOI Crossref
Neuroproteomic profiling of human body fluids.
Häggmark A, Schwenk JM, Nilsson P
Proteomics Clin Appl 10 (4) 485-502 [2016-04-00; online 2015-10-12]
Affiliated researcher
PubMed DOI Crossref
The heterogeneity of human CD127(+) innate lymphoid cells revealed by single-cell RNA sequencing.
Björklund ÅK, Forkel M, Picelli S, ..., Sandberg R, Mjösberg J
Nat. Immunol. 17 (4) 451-460 [2016-04-00; online 2016-02-15]
Affiliated researcher
DOI Crossref
A Facile Synthesis of NODASA-Functionalized Peptide
Naicker T, Albericio F, Dutta J, ..., Kruger H, Govender T
Synlett 27 (11) 1685-1688 [2016-03-30; online 2016-03-30]
Affiliated researcher
PubMed DOI Crossref
Trigger Factor Reduces the Force Exerted on the Nascent Chain by a Cotranslationally Folding Protein.
Nilsson OB, Müller-Lucks A, Kramer G, Bukau B, von Heijne G
J. Mol. Biol. 428 (6) 1356-1364 [2016-03-27; online 2016-02-18]
Affiliated researcher
PubMed DOI Crossref
System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis.
Pozniak Y, Balint-Lahat N, Rudolph JD, ..., Barshack I, Geiger T
Cell Systems 2 (3) 172-184 [2016-03-23; online 2016-03-03]
Affiliated researcher
PubMed DOI Crossref
VEGFR2 pY949 signalling regulates adherens junction integrity and metastatic spread.
Li X, Padhan N, Sjöström EO, ..., Jansson L, Claesson-Welsh L
pmc
Nat Commun 7 (-) 11017 [2016-03-23; online 2016-03-23]
Affiliated researcher
PubMed DOI Crossref
Biological insertion of computationally designed short transmembrane segments.
Baeza-Delgado C, von Heijne G, Marti-Renom MA, Mingarro I
pmc
Sci Rep 6 (-) 23397 [2016-03-18; online 2016-03-18]
Affiliated researcher
PubMed DOI Crossref
On-Water Synthesis of Biaryl Sulfonyl Fluorides.
Chinthakindi PK, Kruger HG, Govender T, Naicker T, Arvidsson PI
J. Org. Chem. 81 (6) 2618-2623 [2016-03-18; online 2016-02-29]
Affiliated researcher
PubMed DOI Crossref
Multiple Gene Repression in Cyanobacteria Using CRISPRi
Yao L, Cengic I, Anfelt J, Hudson EP
ACS Synth. Biol. 5 (3) 207-212 [2016-03-18; online 2015-12-28]
Affiliated researcher
PubMed DOI Crossref
NOD-like receptor signaling and inflammasome-related pathways are highlighted in psoriatic epidermis.
Tervaniemi MH, Katayama S, Skoog T, ..., Kere J, Elomaa O
pmc
Sci Rep 6 (-) 22745 [2016-03-15; online 2016-03-15]
Affiliated researcher
PubMed DOI Crossref
Use of Time-Resolved Fluorescence To Improve Sensitivity and Dynamic Range of Gel-Based Proteomics.
Sandberg A, Buschmann V, Kapusta P, Erdmann R, Wheelock ÅM
Anal. Chem. 88 (6) 3067-3074 [2016-03-15; online 2016-02-22]
Affiliated researcher
PubMed DOI Crossref
Glycation Reactivity of a Quorum-Sensing Signaling Molecule
Tsuchikama K, Gooyit M, Harris TL, ..., Kaufmann GF, Janda KD
Angewandte Chemie International Edition 55 (12) 4002-4006 [2016-03-14; online 2016-02-17]
Fellow
PubMed DOI Crossref
Engineering Cellular Metabolism.
Nielsen J, Keasling JD
Cell 164 (6) 1185-1197 [2016-03-10; online 2016-03-12]
Affiliated researcher
PubMed DOI Crossref
Analysis of the Cerebrospinal Fluid Proteome in Alzheimer's Disease.
Khoonsari PE, Häggmark A, Lönnberg M, ..., Kultima K, Shevchenko G
pmc
PLoS ONE 11 (3) e0150672 [2016-03-07; online 2016-03-07]
Affiliated researcher
PubMed DOI Crossref
Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
Prezza N, Vezzi F, Käller M, Policriti A
pmc
BMC Bioinformatics 17 Suppl 4 (-) 69 [2016-03-02; online 2016-03-02]
Affiliated researcher
PubMed DOI Crossref
Cells release subpopulations of exosomes with distinct molecular and biological properties.
Willms E, Johansson HJ, Mäger I, ..., Wood MJ, Vader P
pmc
Sci Rep 6 (-) 22519 [2016-03-02; online 2016-03-02]
Affiliated researcher
PubMed DOI Crossref
Specific small-RNA signatures in the amygdala at premotor and motor stages of Parkinson’s disease revealed by deep sequencing analysis
Pantano L, Friedländer MR, Escaramís G, ..., Estivill X, Martí E
- 32 (5) 673-681 [2016-03-01; online 2015-11-02]
Fellow
PubMed DOI Crossref
Estrogen receptor beta as target for colorectal cancer prevention.
Williams C, DiLeo A, Niv Y, Gustafsson JÅ
pmc mid
Cancer Lett. 372 (1) 48-56 [2016-03-01; online 2015-12-18]
Affiliated researcher
PubMed DOI Crossref
T-cell receptor-HLA-DRB1 associations suggest specific antigens in pulmonary sarcoidosis.
Grunewald J, Kaiser Y, Ostadkarampour M, ..., Ronninger M, Eklund A
Eur. Respir. J. 47 (3) 898-909 [2016-03-00; online 2015-11-19]
Affiliated researcher
DOI Crossref
Rapid and straightforward transesterification of sulfonyl carbamates
Isaksson R, Kumpiņa I, Larhed M, Wannberg J
Tetrahedron Letters 57 (13) 1476-1478 [2016-03-00; online 2016-03-00]
Affiliated researcher
PubMed DOI Crossref
Small protein domains fold inside the ribosome exit tunnel.
Marino J, von Heijne G, Beckmann R
FEBS Lett. 590 (5) 655-660 [2016-03-00; online 2016-02-25]
Affiliated researcher
PubMed DOI Crossref
The metabolic fingerprint of p,p'-DDE and HCB exposure in humans.
Salihovic S, Ganna A, Fall T, ..., Ingelsson E, Lind L
Environ Int 88 (-) 60-66 [2016-03-00; online 2015-12-22]
Affiliated researcher
PubMed DOI Crossref
Gene expression signatures, pathways and networks in carotid atherosclerosis.
Perisic L, Aldi S, Sun Y, ..., Paulsson-Berne G, Hedin U
GEO
J. Intern. Med. 279 (3) 293-308 [2016-03-00; online 2015-11-30]
Affiliated researcher
PubMed DOI Crossref
Identification of novel genetic causes of Rett syndrome-like phenotypes.
Lopes F, Barbosa M, Ameur A, ..., Pinto D, Maciel P
J. Med. Genet. 53 (3) 190-199 [2016-03-00; online 2016-01-06]
Affiliated researcher
PubMed DOI Crossref
Combined inhibition of DDR1 and Notch signaling is a therapeutic strategy for KRAS-driven lung adenocarcinoma.
Ambrogio C, Gómez-López G, Falcone M, ..., Santamaría D, Barbacid M
Nat. Med. 22 (3) 270-277 [2016-03-00; online 2016-02-08]
Affiliated researcher
PubMed DOI Crossref
Second generation sequencing of microRNA in Human Bone Cells treated with Parathyroid Hormone or Dexamethasone.
Laxman N, Rubin CJ, Mallmin H, ..., Tellgren-Roth C, Kindmark A
Bone 84 (-) 181-188 [2016-03-00; online 2015-12-31]
Affiliated researcher
DOI Crossref
Geographical range in liverworts: does sex really matter?
Laenen B, Machac A, Gradstein SR, ..., Shaw J, Vanderpoorten A
J. Biogeogr. 43 (3) 627-635 [2016-03-00; online 2015-11-04]
Affiliated researcher
PubMed DOI Crossref
Oncogene-Induced Senescence in Pituitary Adenomas--an Immunohistochemical Study.
Manojlovic-Gacic E, Skender-Gazibara M, Popovic V, ..., Pontén F, Casar-Borota O
Endocr. Pathol. 27 (1) 1-11 [2016-03-00; online 2015-11-18]
Affiliated researcher
PubMed DOI Crossref
Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR.
Marabita F, de Candia P, Torri A, ..., Abrignani S, Rossi RL
pmc
Brief. Bioinformatics 17 (2) 204-212 [2016-03-00; online 2015-08-03]
Affiliated researcher
PubMed DOI Crossref
Landscape and Dynamics of Transcription Initiation in the Malaria Parasite Plasmodium falciparum
Adjalley SH, Chabbert CD, Klaus B, Pelechano V, Steinmetz LM
Cell Reports 14 (10) 2463-2475 [2016-03-00; online 2016-03-00]
Affiliated researcher
PubMed DOI Crossref
Altered DNA methylation of glycolytic and lipogenic genes in liver from obese and type 2 diabetic patients.
Kirchner H, Sinha I, Gao H, ..., Dahlman-Wright K, Zierath JR
pmc
Mol Metab 5 (3) 171-183 [2016-03-00; online 2016-01-02]
Affiliated researcher
PubMed DOI Crossref
Whole-exome sequencing in relapsing chronic lymphocytic leukemia: clinical impact of recurrent RPS15 mutations.
Ljungström V, Cortese D, Young E, ..., Sjöblom T, Rosenquist R
pmc
Blood 127 (8) 1007-1016 [2016-02-25; online 2015-12-16]
Affiliated researcher
PubMed DOI Crossref
Structures of Two Melanoma-Associated Antigens Suggest Allosteric Regulation of Effector Binding.
Newman JA, Cooper CD, Roos AK, ..., Osman R, Gileadi O
pmc
PLoS ONE 11 (2) e0148762 [2016-02-24; online 2016-02-24]
Affiliated researcher
DOI Crossref
An Efficient Protecting-Group-Free Synthesis of Vinylic Sulfoximines via Horner–Wadsworth–Emmons Reaction
Naicker T, Arvidsson P, Chinthakindi P, ..., Govender T, Kruger H
Synlett 27 (09) 1423-1427 [2016-02-24; online 2016-02-24]
Affiliated researcher
PubMed DOI Crossref
Anoctamin 2 identified as an autoimmune target in multiple sclerosis.
Ayoglu B, Mitsios N, Kockum I, ..., Olsson T, Nilsson P
pmc
Proc. Natl. Acad. Sci. U.S.A. 113 (8) 2188-2193 [2016-02-23; online 2016-02-09]
Affiliated researcher
DOI Crossref
Microwave Promoted Transcarbamylation Reaction of Sulfonylcarbamates under Continuous-Flow Conditions
Kumpiņa I, Isaksson R, Sävmarker J, Wannberg J, Larhed M
Org. Process Res. Dev. 20 (2) 440-445 [2016-02-19; online 2016-01-05]
Affiliated researcher
PubMed DOI Crossref
Stepwise nucleosome translocation by RSC remodeling complexes
Harada BT, Hwang WL, Deindl S, ..., Bartholomew B, Zhuang X
- 5 (-) - [2016-02-19; online 2016-02-19]
Fellow
PubMed DOI Crossref
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea.
Baker BJ, Saw JH, Lind AE, ..., Teske AP, Ettema TJ
Nat. Microbiol 1 (-) 16002 [2016-02-15; online 2016-02-15]
Affiliated researcher
PubMed DOI Crossref
Exome sequencing in one family with gastric- and rectal cancer.
Thutkawkorapin J, Picelli S, Kontham V, ..., Nilsson D, Lindblom A
pmc
BMC Genet. 17 (-) 41 [2016-02-13; online 2016-02-13]
Affiliated researcher
PubMed DOI Crossref
Discovery of the First Potent and Selective Inhibitors of Human dCTP Pyrophosphatase 1.
Llona-Minguez S, Höglund A, Jacques SA, ..., Scobie M, Helleday T
pmc mid
J. Med. Chem. 59 (3) 1140-1148 [2016-02-11; online 2016-01-27]
Affiliated researcher
PubMed DOI Crossref
Systems Proteomics View of the Endogenous Human Claudin Protein Family.
Liu F, Koval M, Ranganathan S, ..., Kelleher NL, Baker MS
pmc mid
J. Proteome Res. 15 (2) 339-359 [2016-02-05; online 2016-01-12]
Affiliated researcher
PubMed DOI Crossref
Proteome-wide survey of the autoimmune target repertoire in autoimmune polyendocrine syndrome type 1.
Landegren N, Sharon D, Freyhult E, ..., Snyder M, Kämpe O
pmc
Sci Rep 6 (-) 20104 [2016-02-01; online 2016-02-01]
Affiliated researcher
PubMed DOI Crossref
The metabolic background is a global player in Saccharomyces gene expression epistasis
Alam MT, Zelezniak A, Mülleder M, ..., Lilley KS, Ralser M
Nat. Microbiol 1 (3) 15030 [2016-02-01; online 2016-02-01]
Fellow
PubMed DOI Crossref
New loci for body fat percentage reveal link between adiposity and cardiometabolic disease risk.
Lu Y, Day FR, Gustafsson S, ..., Kilpeläinen TO, Loos RJ
pmc
Nat Commun 7 (-) 10495 [2016-02-01; online 2016-02-01]
Affiliated researcher
PubMed DOI Crossref
TOPBP1 regulates RAD51 phosphorylation and chromatin loading and determines PARP inhibitor sensitivity.
Moudry P, Watanabe K, Wolanin KM, ..., Lukas J, Bartek J
pmc
J. Cell Biol. 212 (3) 281-288 [2016-02-01; online 2016-01-25]
Affiliated researcher
PubMed DOI Crossref
Genome-wide meta-analysis uncovers novel loci influencing circulating leptin levels.
Kilpeläinen TO, Carli JF, Skowronski AA, ..., Leibel RL, Loos RJ
pmc
Nat Commun 7 (-) 10494 [2016-02-01; online 2016-02-01]
Affiliated researcher
PubMed DOI Crossref
Complete Knockout of Endogenous Mdr1 ( Abcb1 ) in MDCK Cells by CRISPR-Cas9
Simoff I, Karlgren M, Backlund M, ..., Matsson P, Artursson P
Journal of Pharmaceutical Sciences 105 (2) 1017-1021 [2016-02-00; online 2016-02-00]
Affiliated researcher
PubMed DOI Crossref
Mechanisms of action of bone morphogenetic proteins in cancer.
Davis H, Raja E, Miyazono K, Tsubakihara Y, Moustakas A
Cytokine Growth Factor Rev. 27 (-) 81-92 [2016-02-00; online 2015-11-24]
Affiliated researcher
PubMed DOI Crossref
Correlating chemical sensitivity and basal gene expression reveals mechanism of action.
Rees MG, Seashore-Ludlow B, Cheah JH, ..., Shamji AF, Schreiber SL
pmc mid
Nat. Chem. Biol. 12 (2) 109-116 [2016-02-00; online 2015-12-14]
Affiliated researcher
PubMed DOI Crossref
Exome Sequencing of Uterine Leiomyosarcomas Identifies Frequent Mutations in TP53, ATRX, and MED12.
Mäkinen N, Aavikko M, Heikkinen T, ..., Bützow R, Vahteristo P
pmc
PLoS Genet 12 (2) e1005850 [2016-02-00; online 2016-02-18]
Affiliated researcher
DOI Crossref
Segmentation and Track-Analysis in Time-Lapse Imaging of Bacteria
Sadanandan SK, Baltekin O, Magnusson KEG, ..., Elf J, Wahlby C
IEEE J. Sel. Top. Signal Process. 10 (1) 174-184 [2016-02-00; online 2016-02-00]
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Decreased levels of stem cell factor in subjects with incident coronary events.
Wigren M, Rattik S, Hultman K, ..., Gonçalves I, Nilsson J
J. Intern. Med. 279 (2) 180-191 [2016-02-00; online 2015-10-14]
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Computational Cancer Biology: An Evolutionary Perspective.
Beerenwinkel N, Greenman CD, Lagergren J
pmc
PLoS Comput Biol 12 (2) e1004717 [2016-02-00; online 2016-02-04]
Affiliated researcher
PubMed DOI Crossref
Association between levels of pentraxin 3 and incidence of chronic kidney disease in the elderly.
Sjöberg B, Qureshi AR, Heimbürger O, ..., Bárány P, Ärnlöv J
pmc
J. Intern. Med. 279 (2) 173-179 [2016-02-00; online 2015-09-09]
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Genetic code expansion in stable cell lines enables encoded chromatin modification
Elsässer SJ, Ernst RJ, Walker OS, Chin JW
Nat Methods 13 (2) 158-164 [2016-02-00; online 2016-01-04]
Fellow
PubMed DOI Crossref
TAP-independent self-peptides enhance T cell recognition of immune-escaped tumors.
Doorduijn EM, Sluijter M, Querido BJ, ..., van der Burg SH, van Hall T
pmc
J. Clin. Invest. 126 (2) 784-794 [2016-02-00; online 2016-01-19]
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PubMed DOI Crossref
The Proteome of Filter-Grown Caco-2 Cells With a Focus on Proteins Involved in Drug Disposition.
Ölander M, Wiśniewski JR, Matsson P, Lundquist P, Artursson P
J Pharm Sci 105 (2) 817-827 [2016-02-00; online 2016-01-09]
Affiliated researcher
PubMed DOI Crossref
RAD-seq data point to a northern origin of the arctic-alpine genus Cassiope (Ericaceae).
Hou Y, Nowak MD, Mirré V, ..., Brochmann C, Popp M
Mol. Phylogenet. Evol. 95 (-) 152-160 [2016-02-00; online 2015-12-09]
Affiliated researcher
PubMed DOI Crossref
Genomic sequencing of a dyslexia susceptibility haplotype encompassing ROBO1.
Massinen S, Wang J, Laivuori K, ..., Jiao H, Kere J
pmc
J Neurodev Disord 8 (-) 4 [2016-01-27; online 2016-01-27]
Affiliated researcher
PubMed DOI Crossref
Photoactivation of Mutant Isocitrate Dehydrogenase 2 Reveals Rapid Cancer-Associated Metabolic and Epigenetic Changes
Walker OS, Elsässer SJ, Mahesh M, ..., Balasubramanian S, Chin JW
J. Am. Chem. Soc. 138 (3) 718-721 [2016-01-27; online 2016-01-12]
Fellow
PubMed DOI Crossref
A survey of best practices for RNA-seq data analysis.
Conesa A, Madrigal P, Tarazona S, ..., Zhang X, Mortazavi A
pmc
Genome Biol. 17 (-) 13 [2016-01-26; online 2016-01-26]
Affiliated researcher
PubMed DOI Crossref
Exploration of Interfacial Hydration Networks of Target-Ligand Complexes.
Jeszenői N, Bálint M, Horváth I, van der Spoel D, Hetényi C
J Chem Inf Model 56 (1) 148-158 [2016-01-25; online 2016-01-08]
Affiliated researcher
PubMed DOI Crossref
Proadifen sensitizes resistant ovarian adenocarcinoma cells to cisplatin.
Jendželovský R, Jendželovská Z, Hiľovská L, ..., Mikeš J, Fedoročko P
Toxicol. Lett. 243 (-) 56-66 [2016-01-22; online 2015-12-22]
Affiliated researcher
PubMed DOI Crossref
Interferon-γ-induced p27KIP1 binds to and targets MYC for proteasome-mediated degradation.
Bahram F, Hydbring P, Tronnersjö S, ..., Castell A, Larsson LG
pmc
Oncotarget 7 (3) 2837-2854 [2016-01-19; online 2015-12-25]
Affiliated researcher
PubMed DOI Crossref
A meta-analysis of 120 246 individuals identifies 18 new loci for fibrinogen concentration.
de Vries PS, Chasman DI, Sabater-Lleal M, ..., Strachan DP, Dehghan A
pmc
Hum. Mol. Genet. 25 (2) 358-370 [2016-01-15; online 2015-11-10]
Affiliated researcher
PubMed DOI Crossref
Using Whole-Exome Sequencing to Identify Genetic Markers for Carboplatin and Gemcitabine-Induced Toxicities.
Gréen H, Hasmats J, Kupershmidt I, ..., Peterson C, Lundeberg J
Clin. Cancer Res. 22 (2) 366-373 [2016-01-15; online 2015-09-16]
Affiliated researcher
PubMed DOI Crossref
Cancer-Specific Synthetic Lethality between ATR and CHK1 Kinase Activities.
Sanjiv K, Hagenkort A, Calderón-Montaño JM, ..., Altun M, Helleday T
pmc
Cell Reports 14 (2) 298-309 [2016-01-12; online 2015-12-31]
Affiliated researcher
PubMed DOI Crossref
Simultaneous Multiplexed Measurement of RNA and Proteins in Single Cells.
Darmanis S, Gallant CJ, Marinescu VD, ..., Westermark B, Landegren U
pmc
Cell Reports 14 (2) 380-389 [2016-01-12; online 2015-12-31]
Affiliated researcher
PubMed DOI Crossref
Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis.
Bersani C, Huss M, Giacomello S, ..., Lui WO, Wiman KG
pmc
Oncotarget 7 (2) 1895-1911 [2016-01-12; online 2015-12-18]
Affiliated researcher
PubMed DOI Crossref
The protein kinase LKB1 negatively regulates bone morphogenetic protein receptor signaling.
Raja E, Tzavlaki K, Vuilleumier R, ..., Heldin CH, Moustakas A
pmc
Oncotarget 7 (2) 1120-1143 [2016-01-12; online 2015-12-25]
Affiliated researcher
PubMed DOI Crossref
Influence of pre-existing inflammation on the outcome of acute coronary syndrome: a cross-sectional study.
Odeberg J, Freitag M, Forssell H, ..., Råstam L, Lindblad U
pmc
BMJ Open 6 (1) e009968 [2016-01-12; online 2016-01-12]
Affiliated researcher
PubMed DOI Crossref
CRISPRz: a database of zebrafish validated sgRNAs.
Varshney GK, Zhang S, Pei W, ..., Sood R, Burgess SM
pmc
Nucleic Acids Res. 44 (D1) D822-D826 [2016-01-04; online 2015-10-04]
Affiliated researcher
PubMed DOI Crossref
Case definitions in Swedish register data to identify systemic lupus erythematosus.
Arkema EV, Jönsen A, Rönnblom L, ..., Sjöwall C, Simard JF
pmc
BMJ Open 6 (1) e007769 [2016-01-04; online 2016-01-04]
Affiliated researcher
PubMed DOI Crossref
Antigen Selection Shapes the T-cell Repertoire in Chronic Lymphocytic Leukemia.
Vardi A, Agathangelidis A, Stalika E, ..., Sutton LA, Stamatopoulos K
Clin. Cancer Res. 22 (1) 167-174 [2016-01-01; online 2015-09-02]
Affiliated researcher
PubMed DOI Crossref
A minimalistic microbial food web in an excavated deep subsurface clay rock.
Bagnoud A, de Bruijn I, Andersson AF, ..., Schwyn B, Bernier-Latmani R
FEMS Microbiol. Ecol. 92 (1) - [2016-01-00; online 2015-11-04]
Affiliated researcher
DOI Crossref
Large-scale non-targeted metabolomic profiling in three human population-based studies
Ganna A, Fall T, Salihovic S, ..., Pawitan Y, Ingelsson E
Metabolomics 12 (1) - [2016-01-00; online 2015-11-07]
Affiliated researcher
PubMed DOI Crossref
Protein Biomarkers for Insulin Resistance and Type 2 Diabetes Risk in Two Large Community Cohorts.
Nowak C, Sundström J, Gustafsson S, ..., Ingelsson E, Fall T
pmc
Diabetes 65 (1) 276-284 [2016-01-00; online 2015-09-29]
Affiliated researcher
PubMed DOI Crossref
Composition of human faecal microbiota in resistance to Campylobacter infection.
Kampmann C, Dicksved J, Engstrand L, Rautelin H
Clin. Microbiol. Infect. 22 (1) 61.e1-61.e8 [2016-01-00; online 2015-09-11]
Affiliated researcher
PubMed DOI Crossref
F11 is associated with recurrent VTE in women. A prospective cohort study.
Bruzelius M, Ljungqvist M, Bottai M, ..., Lärfars G, Odeberg J
Thromb. Haemost. 115 (2) 406-414 [2016-01-00; online 2015-10-01]
Affiliated researcher
PubMed DOI Crossref
Mutations in FLVCR2 associated with Fowler syndrome and survival beyond infancy.
Kvarnung M, Taylan F, Nilsson D, ..., Nordgren A, Syk Lundberg E
Clin. Genet. 89 (1) 99-103 [2016-01-00; online 2015-03-04]
Affiliated researcher
PubMed DOI Crossref
The WD40 Domain Protein MSI1 Functions in a Histone Deacetylase Complex to Fine-Tune Abscisic Acid Signaling.
Mehdi S, Derkacheva M, Ramström M, ..., Bergquist J, Hennig L
pmc
Plant Cell 28 (1) 42-54 [2016-01-00; online 2015-12-24]
Affiliated researcher
PubMed DOI Crossref
hTERT promoter methylation in pituitary adenomas.
Köchling M, Ewelt C, Fürtjes G, ..., Stummer W, Brokinkel B
Brain Tumor Pathol 33 (1) 27-34 [2016-01-00; online 2015-09-21]
Affiliated researcher
PubMed DOI Crossref
Out of southern East Asia: the natural history of domestic dogs across the world.
Wang GD, Zhai W, Yang HC, ..., Savolainen P, Zhang YP
pmc
Cell Res. 26 (1) 21-33 [2016-01-00; online 2015-12-15]
Affiliated researcher
PubMed DOI Crossref
Genetic heterogeneity in rhabdomyosarcoma revealed by SNP array analysis.
Walther C, Mayrhofer M, Nilsson J, ..., Gisselsson D, Mertens F
Genes Chromosomes Cancer 55 (1) 3-15 [2016-01-00; online 2015-10-20]
Affiliated researcher
PubMed DOI Crossref
Increased lanosterol turnover: a metabolic burden for daunorubicin-resistant leukemia cells.
Stäubert C, Krakowsky R, Bhuiyan H, ..., Broom O, Nordström A
pmc
Med. Oncol. 33 (1) 6 [2016-01-00; online 2015-12-23]
Affiliated researcher
DOI Crossref
Organocatalyzed Mannich reactions on minocycline: Towards novel tetracycline antibiotics
CHIWUNZE TE, Azumah R, Ramtahal M, ..., Govender T, Naicker T
S.Afr.j.chem. 69 (-) - [2016-00-00; online 2016-00-00]
Affiliated researcher
DOI Crossref
Fractal Dimension versus Process Complexity
Joosten JJ, Soler-Toscano F, Zenil H
Advances in Mathematical Physics 2016 (-) 1-21 [2016-00-00; online 2016-00-00]
Affiliated researcher