Publications 2024

Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females.

Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E

Front Neuroendocrinol - (-) 101160 [2024-11-06; online 2024-11-06]

Spatial Multiomics Reveals Intratumoral Immune Heterogeneity with Distinct Cytokine Networks in Lung Cancer Brain Metastases.

Christensson G, Bocci M, Kazi JU, ..., Gonzalez Velozo H, Hagerling C

Cancer Res Commun 4 (11) 2888-2902 [2024-11-01; online 2024-10-14]

PubMed DOI Crossref

White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study.

Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E

Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 [2024-10-23; online 2024-10-23]

Erika Comasco SciLifeLab Fellow

DOI Crossref

Fish are poor sentinels for surveillance of riverine AMR

Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U

- - (-) - [2024-10-22; online 2024-10-22]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Metagenomic assemblies tend to break around antibiotic resistance genes.

Abramova A, Karkman A, Bengtsson-Palme J

BMC Genomics 25 (1) 959 [2024-10-14; online 2024-10-14]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Peripartum depression symptom trajectories, telomere length and genotype, and adverse childhood experiences.

Vrettou M, Lager S, Toffoletto S, ..., Skalkidou A, Comasco E

BMC Psychiatry 24 (1) 661 [2024-10-08; online 2024-10-08]

Erika Comasco SciLifeLab Fellow

DOI Crossref

Genetic Adaptation to Amoxicillin inEscherichia coli: The Limited Role ofdinBandkatE

Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Kuile Bt

- - (-) - [2024-10-06; online 2024-10-06]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.

Weitz P, Valkonen M, Solorzano L, ..., Ruusuvuori P, Rantalainen M

Med Image Anal 97 (-) 103257 [2024-10-00; online 2024-07-01]

Kimmo Kartasalo

PubMed DOI Crossref

Bayesian polynomial neural networks and polynomial neural ordinary differential equations.

Fronk C, Yun J, Singh P, Petzold L

PLoS Comput Biol 20 (10) e1012414 [2024-10-00; online 2024-10-10]

Prashant Singh SciLifeLab Fellow

PubMed DOI Crossref

The regulatory landscape of interacting RNA and protein pools in cellular homeostasis and cancer.

Gallardo-Dodd CJ, Kutter C

Hum Genomics 18 (1) 109 [2024-09-27; online 2024-09-27]

Claudia Kutter SciLifeLab Fellow

DOI Crossref

The Organelle in the Ointment: improved detection of cryptic mitochondrial reads resolves many unknown sequences in cross-species microbiome analyses

Sonett D, Brown T, Bengtsson-Palme J, Padilla-Gamiño JL, Zaneveld JR

ISME Commun - (-) - [2024-09-24; online 2024-09-24]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.

Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y

J. Clin. Invest. - (-) - [2024-09-10; online 2024-09-10]

SciLifeLab Fellow Yumeng Mao

DOI Crossref

Comprehensive analysis of the RBP regulome reveals functional modules and drug candidates in liver cancer

Garbulowski M, Mosca R, Gallardo-Dodd CJ, Kutter C, Sonnhammer ELL

- - (-) - [2024-09-06; online 2024-09-06]

Claudia Kutter SciLifeLab Fellow

DOI Crossref

Structure prediction of alternative protein conformations

Bryant P, Noé F

Nat Commun 15 (1) - [2024-08-26; online 2024-08-26]

Patrick Bryant

PubMed DOI Crossref

Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization.

Erb IK, Suarez C, Frank EM, ..., Lindberg E, Paul CJ

FEMS Microbes 5 (-) xtae024 [2024-08-14; online 2024-08-14]

DDLS Fellow Johan Bengtsson-Palme

DOI Crossref

Adaptive Robust Learning using Latent Bernoulli Variables

Karakulev A, Zachariah D, Singh P

Proceedings of the 41st International Conference on Machine Learning, PMLR 235 (-) 23105-23122 [2024-07-27; online 2023-12-04] Open Access

Prashant Singh SciLifeLab Fellow

DOI Crossref

Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile

Bryant P, Noé F

PLoS Comput Biol 20 (7) e1012253 [2024-07-25; online 2024-07-25]

Patrick Bryant

DOI Crossref

Design of linear and cyclic peptide binders of different lengths from protein sequence information

Li Q, Vlachos EN, Bryant P

- - (-) - [2024-06-22; online 2024-06-22]

Patrick Bryant

PubMed DOI Crossref

Cortical morphology variations during the menstrual cycle in individuals with and without premenstrual dysphoric disorder.

Dubol M, Stiernman L, Sundström-Poromaa I, Bixo M, Comasco E

J Affect Disord 355 (-) 470-477 [2024-06-15; online 2024-03-27]

Erika Comasco SciLifeLab Fellow

DOI Crossref

Fluoroquinolone-Specific Resistance Trajectories inE. coliand their Dependence on the SOS-Response

Teichmann L, Luitwieler S, Bengtsson-Palme J, ter Kuile B

- - (-) - [2024-06-06; online 2024-06-06]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Chemical signatures delineate heterogeneous amyloid plaque populations across the Alzheimer's disease spectrum.

Koutarapu S, Ge J, Dulewicz M, ..., Schöll M, Hanrieder J

bioRxiv - (-) - [2024-06-03; online 2024-06-03]

SciLifeLab Fellow Wojciech Michno

PubMed DOI Crossref

Mid-pregnancy allopregnanolone levels and trajectories of perinatal depressive symptoms.

Björväng RD, Walldén Y, Fransson E, ..., Sundström-Poromaa I, Skalkidou A

Psychoneuroendocrinology 164 (-) 107009 [2024-06-00; online 2024-02-28]

Erika Comasco SciLifeLab Fellow

DOI Crossref

Structure prediction of protein-ligand complexes from sequence information with Umol

Bryant P, Kelkar A, Guljas A, Clementi C, Noé F

Nat Commun 15 (1) - [2024-05-28; online 2024-05-28]

Patrick Bryant

PubMed DOI Crossref

Effectiveness and Cost-effectiveness of Artificial Intelligence-assisted Pathology for Prostate Cancer Diagnosis in Sweden: A Microsimulation Study.

Du X, Hao S, Olsson H, ..., Eklund M, Clements M

Eur Urol Oncol - (-) - [2024-05-23; online 2024-05-23]

Kimmo Kartasalo

PubMed DOI Crossref

Modeling brain sex in the limbic system as phenotype for female-prevalent mental disorders.

Matte Bon G, Kraft D, Comasco E, Derntl B, Kaufmann T

Biol Sex Differ 15 (1) 42 [2024-05-15; online 2024-05-15]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

White matter volume and treatment with selective progesterone receptor modulator in patients with premenstrual dysphoric disorder.

Kaltsouni E, Wikström J, Lanzenberger R, Sundström-Poromaa I, Comasco E

Psychoneuroendocrinology 163 (-) 106977 [2024-05-00; online 2024-01-22]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

Loss of NEDD8 in cancer cells causes vulnerability to immune checkpoint blockade in triple-negative breast cancer.

Papakyriacou I, Kutkaite G, Rúbies Bedós M, ..., Menden MP, Mao Y

Nat Commun 15 (1) 3581 [2024-04-27; online 2024-04-27]

SciLifeLab Fellow Yumeng Mao

PubMed DOI Crossref

Estrogen receptor activation remodels TEAD1 gene expression to alleviate hepatic steatosis.

Sommerauer C, Gallardo-Dodd CJ, Savva C, ..., Williams C, Kutter C

Mol Syst Biol 20 (4) 374-402 [2024-04-00; online 2024-03-08]

Claudia Kutter SciLifeLab Fellow

PubMed DOI Crossref

Low coverage of species constrains the use of DNA barcoding to assess mosquito biodiversity.

Moraes Zenker M, Portella TP, Pessoa FAC, Bengtsson-Palme J, Galetti PM

Sci Rep 14 (1) 7432 [2024-03-28; online 2024-03-28]

DDLS Fellow Johan Bengtsson-Palme

PubMed DOI Crossref

Spatial Neurolipidomics at the Single Amyloid-β Plaque Level in Postmortem Human Alzheimer's Disease Brain.

Michno W, Bowman A, Jha D, ..., Heeren RMA, Hanrieder J

ACS Chem Neurosci 15 (4) 877-888 [2024-02-21; online 2024-02-01]

SciLifeLab Fellow Wojciech Michno

PubMed DOI Crossref

Intrinsic deletion at 10q23.31, including the PTEN gene locus, is aggravated upon CRISPR-Cas9-mediated genome engineering in HAP1 cells mimicking cancer profiles.

Geng K, Merino LG, Veiga RG, ..., Brinkman EK, Kutter C

Life Sci. Alliance 7 (2) - [2024-02-00; online 2023-11-20]

Claudia Kutter SciLifeLab Fellow

PubMed DOI Crossref

Electroencephalography findings in menstrually-related mood disorders: A critical review.

Kaltsouni E, Schmidt F, Zsido RG, ..., Sumner RL, Comasco E

Front Neuroendocrinol 72 (-) 101120 [2024-01-00; online 2024-01-02]

Erika Comasco SciLifeLab Fellow

PubMed DOI Crossref

Aberrant microbiomes are associated with increased antibiotic resistance gene load in hybrid mice.

Jarquín-Díaz VH, Ferreira SCM, Balard A, ..., Forslund-Startceva SK, Heitlinger E

ISME Commun 4 (1) ycae053 [2024-01-00; online 2024-04-15]

DDLS Fellow Johan Bengtsson-Palme

DOI Crossref

Transfer Learning-Assisted Inverse Modeling in Nanophotonics Based on Mixture Density Networks

Cheng L, Singh P, Ferranti F

IEEE Access 12 (-) 55218-55224 [2024-00-00; online 2024-00-00]

Prashant Singh SciLifeLab Fellow

Publications 2024

34 publications