Andrea Fossati

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Primary: Shown in the list of current labels.

Year 2026

DOI Crossref
The porin MspA is a phage-specific determinant of mycobacteriophage infection
Kim D, Maziero M, Eckartt KA, ..., Rock JM, Fossati A
- - (-) - [2026-10-10; online 2026-10-10]
Andrea Fossati DDLS Fellow
DOI Crossref
Conserved mycobacteriophage protein uses structural mimicry to displace host initiation factors
Parker DR, Ghosh S, Dujiskova A, ..., Campbell E, Fossati A
- - (-) - [2026-10-05; online 2026-10-05]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
A tissue-specific atlas of protein-protein associations enables prioritization of candidate disease genes.
Laman Trip DS, van Oostrum M, Memon D, ..., Wollscheid B, Beltrao P
Nat. Biotechnol. 44 (4) 654-667 [2026-04-00; online 2025-05-02]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Need for speed: advances in the era of high throughput interaction proteomics.
Frommelt F, Federico U, Aebersold R, Fossati A
Mol Omics 22 (2) - [2026-03-06; online 2026-03-07]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Exploring infection biology with mass spectrometry-based proteomics.
Prensa GI, García Navarro A, Parker D, Fossati A
Mol Omics 22 (2) - [2026-03-06; online 2026-02-19]
Andrea Fossati DDLS Fellow

Year 2025

PubMed DOI Crossref
Anti-restriction functions of injected phage proteins revealed by peeling back layers of bacterial immunity.
Silas S, Carion H, Makarova KS, ..., Koonin EV, Bondy-Denomy J
Nat Commun 16 (1) 7828 [2025-08-22; online 2025-08-22]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Plasma proteomics for biomarker discovery in childhood tuberculosis.
Fossati A, Wambi P, Jaganath D, ..., Swaney DL, COMBO Study Consortium
Nat Commun 16 (1) 6657 [2025-07-19; online 2025-07-19]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Malaria exposure remodels the plasma proteome of Ghanaian children.
Mohammed AM, Olwal CO, Fossati A, ..., Bouhaddou M, Bediako Y
BMC Infect Dis 25 (1) 157 [2025-02-03; online 2025-02-03]
Andrea Fossati DDLS Fellow

Year 2024

DOI Crossref
Plasma proteomics for novel biomarker discovery in childhood tuberculosis
Fossati A, Wambi P, Jaganath D, ..., Zar HJ, Swaney DL
- - (-) - [2024-12-08; online 2024-12-08]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Multiscale photocatalytic proximity labeling reveals cell surface neighbors on and between cells.
Lin Z, Schaefer K, Lui I, ..., Sali A, Wells JA
Science (New York, N.Y.) 385 (6706) eadl5763 [2024-07-19; online 2024-07-19]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Characterization of a lipid-based jumbo phage compartment as a hub for early phage infection.
Mozumdar D, Fossati A, Stevenson E, ..., Swaney DL, Bondy-Denomy J
Cell Host Microbe 32 (7) 1050-1058.e7 [2024-07-10; online 2024-06-12]
Andrea Fossati DDLS Fellow
DOI Crossref
An atlas of protein-protein associations of human tissues prioritizes candidate disease genes
Laman Trip DS, van Oostrum M, Memon D, ..., Wollscheid B, Beltrao P
- - (-) - [2024-05-17; online 2024-05-17]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes.
Frommelt F, Fossati A, Uliana F, ..., Ciuffa R, Gstaiger M
Nat. Methods 21 (4) 635-647 [2024-04-00; online 2024-03-26]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Longevity interventions modulate mechanotransduction and extracellular matrix homeostasis in C. elegans.
Teuscher AC, Statzer C, Goyala A, ..., Aebersold R, Ewald CY
Nat Commun 15 (1) 276 [2024-01-04; online 2024-01-04]
Andrea Fossati DDLS Fellow

Year 2023

PubMed DOI Crossref
In vivo protein turnover rates in varying oxygen tensions nominate MYBBP1A as a mediator of the hyperoxia response.
Chen X, Haribowo AG, Baik AH, ..., Swaney DL, Jain IH
Sci Adv 9 (49) eadj4884 [2023-12-08; online 2023-12-08]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
SARS-CoV-2 variants evolve convergent strategies to remodel the host response.
Bouhaddou M, Reuschl AK, Polacco BJ, ..., Towers GJ, Krogan NJ
Cell 186 (21) 4597-4614.e26 [2023-10-12; online 2023-09-21]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Proteomic and genetic analyses of influenza A viruses identify pan-viral host targets.
Haas KM, McGregor MJ, Bouhaddou M, ..., García-Sastre A, Krogan NJ
Nat Commun 14 (1) 6030 [2023-09-27; online 2023-09-27]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Next-generation proteomics for quantitative Jumbophage-bacteria interaction mapping.
Fossati A, Mozumdar D, Kokontis C, ..., Bondy-Denomy J, Swaney DL
Nat Commun 14 (1) 5156 [2023-08-24; online 2023-08-24]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems.
Bludau I, Nicod C, Martelli C, ..., Aebersold R, Collins BC
J. Proteome Res. 22 (5) 1520-1536 [2023-05-05; online 2023-04-14]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Phosphorylation-linked complex profiling identifies assemblies required for Hippo signal integration.
Uliana F, Ciuffa R, Mishra R, ..., Aebersold R, Gstaiger M
Mol Syst Biol 19 (4) e11024 [2023-04-12; online 2023-03-10]
Andrea Fossati DDLS Fellow

Year 2022

PubMed DOI Crossref
PCfun: a hybrid computational framework for systematic characterization of protein complex function.
Sharma VS, Fossati A, Ciuffa R, ..., Aebersold R, Li C
Brief. Bioinformatics 23 (4) - [2022-07-18; online 2022-06-21]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Mutations in SARS-CoV-2 variants of concern link to increased spike cleavage and virus transmission.
Escalera A, Gonzalez-Reiche AS, Aslam S, ..., García-Sastre A, Aydillo T
Cell Host Microbe 30 (3) 373-387.e7 [2022-03-09; online 2022-01-21]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Evolution of enhanced innate immune evasion by SARS-CoV-2.
Thorne LG, Bouhaddou M, Reuschl AK, ..., Towers GJ, Krogan NJ
Nature 602 (7897) 487-495 [2022-02-00; online 2021-12-23]
Andrea Fossati DDLS Fellow

Year 2021

PubMed DOI Crossref
Toward Comprehensive Plasma Proteomics by Orthogonal Protease Digestion.
Fossati A, Richards AL, Chen KH, ..., Ernst JD, Swaney DL
J. Proteome Res. 20 (8) 4031-4040 [2021-08-06; online 2021-07-28]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.
Gupta M, Azumaya CM, Moritz M, ..., Rosenberg OS, Verba KA
bioRxiv - (-) - [2021-05-11; online 2021-05-11]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
PCprophet: a framework for protein complex prediction and differential analysis using proteomic data.
Fossati A, Li C, Uliana F, ..., Gstaiger M, Aebersold R
Nat. Methods 18 (5) 520-527 [2021-05-00; online 2021-04-15]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
Mapping specificity, cleavage entropy, allosteric changes and substrates of blood proteases in a high-throughput screen.
Uliana F, Vizovišek M, Acquasaliente L, ..., Auf dem Keller U, Aebersold R
Nat Commun 12 (1) 1693 [2021-03-16; online 2021-03-16]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
System-Wide Profiling of Protein Complexes Via Size Exclusion Chromatography-Mass Spectrometry (SEC-MS).
Fossati A, Frommelt F, Uliana F, ..., Gstaiger M, Aebersold R
Methods in molecular biology (Clifton, N.J.) 2259 (-) 269-294 [2021-03-10; online 2021-03-10]
Andrea Fossati DDLS Fellow
SciLifeLab Data Centre
Publications 9.5.2