Publications 2013

473 publications

Organocatalyzed stereospecific C-C bond formation of β-lactams.
Pawar SA, Alapour S, Khanyase S, ..., Govender T, Arvidsson PI
Org. Biomol. Chem. 11 (48) 8294-8297 [2013-12-28; online 2013-11-11]
Association of STAT4 polymorphism with severe renal insufficiency in lupus nephritis.
Bolin K, Sandling JK, Zickert A, ..., Gunnarsson I, Nordmark G
PLoS ONE 8 (12) e84450 [2013-12-27; online 2013-12-27]
Chemical Biology Consortium Sweden.
Hammarström LG, Jensen AJ
ACS chemical biology 8 (12) 2605-2606 [2013-12-20; online 2013-12-21]
Local partition coefficients govern solute permeability of cholesterol-containing membranes.
Zocher F, van der Spoel D, Pohl P, Hub JS
Biophys. J. 105 (12) 2760-2770 [2013-12-17; online 2013-12-24]
Profiling post-centrifugation delay of serum and plasma with antibody bead arrays.
Qundos U, Hong MG, Tybring G, ..., Nilsson P, Schwenk JM
J Proteomics 95 (-) 46-54 [2013-12-16; online 2013-04-28]
SMG-1 suppresses CDK2 and tumor growth by regulating both the p53 and Cdc25A signaling pathways.
Gubanova E, Issaeva N, Gokturk C, Djureinovic T, Helleday T
Cell Cycle 12 (24) 3770-3780 [2013-12-15; online 2013-10-04]
Probing concentration-dependent behavior of DNA-binding proteins on a single-molecule level illustrated by Rad51.
Frykholm K, Freitag C, Persson F, Tegenfeldt JO, Granéli A
Anal. Biochem. 443 (2) 261-268 [2013-12-15; online 2013-08-29]
Bile acids modulate signaling by functional perturbation of plasma membrane domains.
Zhou Y, Maxwell KN, Sezgin E, ..., Lichtenberger LM, Levental I
J Biol Chem 288 (50) 35660-35670 [2013-12-13; online 2013-10-28]
Erdinc Sezgin SciLifeLab Fellow
Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B.
Karlsson EK, Sigurdsson S, Ivansson E, ..., Breen M, Lindblad-Toh K
Genome Biol. 14 (12) R132 [2013-12-12; online 2013-12-12]
The impact of nandrolone decanoate and growth hormone on biosynthesis of steroids in rats.
Grönbladh A, Johansson J, Kushnir MM, Bergquist J, Hallberg M
Steroids 78 (12-13) 1192-1199 [2013-12-11; online 2013-09-05]
Microfluidic device for generating a stepwise concentration gradient on a microwell slide for cell analysis.
Weibull E, Matsui S, Sakai M, Andersson Svahn H, Ohashi T
Biomicrofluidics 7 (6) 64115 [2013-12-10; online 2013-12-10]
Broad-scale phylogenomics provides insights into retrovirus-host evolution.
Hayward A, Grabherr M, Jern P
Proc. Natl. Acad. Sci. U.S.A. 110 (50) 20146-20151 [2013-12-10; online 2013-11-25]
Signaling in insulin-secreting MIN6 pseudoislets and monolayer cells.
Chowdhury A, Satagopam VP, Manukyan L, ..., Bergquist J, Bergsten P
J. Proteome Res. 12 (12) 5954-5962 [2013-12-06; online 2013-09-30]
Mass fingerprinting of complex mixtures: protein inference from high-resolution peptide masses and predicted retention times.
Moruz L, Hoopmann MR, Rosenlund M, ..., Moritz RL, Käll L
J. Proteome Res. 12 (12) 5730-5741 [2013-12-06; online 2013-10-11]
Urinary prognostic biomarkers and classification of IgA nephropathy by high resolution mass spectrometry coupled with liquid chromatography.
Kalantari S, Rutishauser D, Samavat S, ..., Rezaei-Tavirani M, Zubarev RA
PLoS ONE 8 (12) e80830 [2013-12-05; online 2013-12-05]
S100A4 interacts with p53 in the nucleus and promotes p53 degradation.
Orre LM, Panizza E, Kaminskyy VO, ..., Zhivotovsky B, Lehtiö J
Oncogene 32 (49) 5531-5540 [2013-12-05; online 2013-06-10]
Transcription-factor binding and sliding on DNA studied using micro- and macroscopic models.
Marklund EG, Mahmutovic A, Berg OG, ..., Fange D, Elf J
Proc. Natl. Acad. Sci. U.S.A. 110 (49) 19796-19801 [2013-12-03; online 2013-11-12]
Integrated molecular portrait of non-small cell lung cancers.
Lazar V, Suo C, Orear C, ..., Hansson J, Pawitan Y
BMC Med Genomics 6 (-) 53 [2013-12-03; online 2013-12-03]
A genome-wide association study of atopic dermatitis identifies loci with overlapping effects on asthma and psoriasis.
Weidinger S, Willis-Owen SA, Kamatani Y, ..., Irvine AD, Moffatt MF
Hum. Mol. Genet. 22 (23) 4841-4856 [2013-12-01; online 2013-07-25]
Using transcriptomics to improve butanol tolerance of Synechocystis sp. strain PCC 6803.
Anfelt J, Hallström B, Nielsen J, Uhlén M, Hudson EP
Applied and environmental microbiology 79 (23) 7419-7427 [2013-12-00; online 2013-09-20]
Selectivity analysis of single binder assays used in plasma protein profiling.
Neiman M, Fredolini C, Johansson H, ..., Nilsson P, Schwenk JM
Proteomics 13 (23-24) 3406-3410 [2013-12-00; online 2013-11-18]
Protein expansion is primarily due to indels in intrinsically disordered regions.
Light S, Sagit R, Sachenkova O, Ekman D, Elofsson A
Mol. Biol. Evol. 30 (12) 2645-2653 [2013-12-00; online 2013-09-12]
Post translational modifications in adenovirus type 2.
Bergström Lind S, Artemenko KA, Elfineh L, ..., Bergquist J, Pettersson U
Virology 447 (1-2) 104-111 [2013-12-00; online 2013-09-21]
Olfactory receptor 51E1 as a novel target for diagnosis in somatostatin receptor-negative lung carcinoids.
Giandomenico V, Cui T, Grimelius L, ..., Pelosi G, Tsolakis AV
J. Mol. Endocrinol. 51 (3) 277-286 [2013-12-00; online 2013-11-07]
Novel candidate genes for 46,XY gonadal dysgenesis identified by a customized 1 M array-CGH platform.
Norling A, Lindén Hirschberg A, Iwarsson E, ..., Wedell A, Barbaro M
Eur J Med Genet 56 (12) 661-668 [2013-12-00; online 2013-09-18]
In situ mutation detection and visualization of intratumor heterogeneity for cancer research and diagnostics.
Grundberg I, Kiflemariam S, Mignardi M, ..., Botling J, Nilsson M
Oncotarget 4 (12) 2407-2418 [2013-12-00; online 2013-11-28]
Affiliated researcher
High expression of glycolytic and pigment proteins is associated with worse clinical outcome in stage III melanoma.
Falkenius J, Lundeberg J, Johansson H, ..., Hansson J, Egyhazi Brage S
Melanoma Res. 23 (6) 452-460 [2013-12-00; online 2013-10-17]
Biochemical characterization of stallion prostasomes and comparison to their human counterparts.
Ronquist GK, Ek B, Ronquist G, ..., Carlsson L, Larsson A
Syst Biol Reprod Med 59 (6) 297-303 [2013-12-00; online 2013-08-02]
Association between circulating endostatin, hypertension duration, and hypertensive target-organ damage.
Carlsson AC, Ruge T, Sundström J, ..., Lind L, Arnlöv J
Hypertension 62 (6) 1146-1151 [2013-12-00; online 2013-09-30]
Accurate sex identification of ancient human remains using DNA shotgun sequencing
Skoglund P, Storå J, Götherström A, Jakobsson M
Journal of Archaeological Science 40 (12) 4477-4482 [2013-12-00; online 2013-12-00]
Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade.
Zaremba-Niedzwiedzka K, Viklund J, Zhao W, ..., Stepanauskas R, Andersson SG
Genome Biol. 14 (11) R130 [2013-11-28; online 2013-11-28]
Thermal Energy Dissipation by SiO2-Coated Plasmonic-Superparamagnetic Nanoparticles in Alternating Magnetic Fields
Sotiriou GA, Visbal-Onufrak MA, Teleki A, ..., Pratsinis SE, Rinaldi C
Chem Mater 25 (22) 4603-4612 [2013-11-26; online 2013-11-07]
Alexandra Teleki SciLifeLab Fellow
Identification of candidate serum proteins for classifying well-differentiated small intestinal neuroendocrine tumors.
Darmanis S, Cui T, Drobin K, ..., Schwenk JM, Giandomenico V
PLoS ONE 8 (11) e81712 [2013-11-25; online 2013-11-25]
Snail depletes the tumorigenic potential of glioblastoma.
Savary K, Caglayan D, Caja L, ..., Ferletta M, Moustakas A
Oncogene 32 (47) 5409-5420 [2013-11-21; online 2013-03-25]
Fastphylo: fast tools for phylogenetics.
Khan MA, Elias I, Sjölund E, ..., Lagergren J, Arvestad L
BMC Bioinformatics 14 (-) 334 [2013-11-20; online 2013-11-20]
Rule-based models of the interplay between genetic and environmental factors in childhood allergy.
Bornelöv S, Sääf A, Melén E, ..., Pershagen G, Komorowski J
PLoS ONE 8 (11) e80080 [2013-11-19; online 2013-11-19]
Close encounters of the third domain: the emerging genomic view of archaeal diversity and evolution.
Spang A, Martijn J, Saw JH, ..., Guy L, Ettema TJ
Archaea 2013 (-) 202358 [2013-11-19; online 2013-11-19]
In vivo trp scanning of the small multidrug resistance protein EmrE confirms 3D structure models'.
Lloris-Garcerá P, Slusky JS, Seppälä S, ..., Schäfer LV, von Heijne G
J. Mol. Biol. 425 (22) 4642-4651 [2013-11-15; online 2013-08-03]
Affiliated researcher
Protocol for a collaborative meta-analysis of 5-HTTLPR, stress, and depression.
Culverhouse RC, Bowes L, Breslau N, ..., Bierut LJ, 5-HTTLPR, Stress, and Depression Consortium
BMC Psychiatry 13 (-) 304 [2013-11-12; online 2013-11-12]
Erika Comasco SciLifeLab Fellow
Mutagenesis and computational modeling of human G-protein-coupled receptor Y2 for neuropeptide Y and peptide YY.
Xu B, Fällmar H, Boukharta L, ..., Aqvist J, Larhammar D
Biochemistry 52 (45) 7987-7998 [2013-11-12; online 2013-10-31]
Transforming growth factor-β signalling controls human breast cancer metastasis in a zebrafish xenograft model.
Drabsch Y, He S, Zhang L, Snaar-Jagalska BE, ten Dijke P
Breast Cancer Res. 15 (6) R106 [2013-11-07; online 2013-11-07]
Inference of the genetic architecture underlying BMI and height with the use of 20,240 sibling pairs.
Hemani G, Yang J, Vinkhuyzen A, ..., Martin NG, Visscher PM
Am. J. Hum. Genet. 93 (5) 865-875 [2013-11-07; online 2013-10-31]
Excap: maximization of haplotypic diversity of linked markers.
Kahles A, Sarqume F, Savolainen P, Arvestad L
PLoS ONE 8 (11) e79012 [2013-11-07; online 2013-11-07]
β-sheet structures and dimer models of the two major tyrocidines, antimicrobial peptides from Bacillus aneurinolyticus.
Munyuki G, Jackson GE, Venter GA, ..., Bhattacharya B, van der Spoel D
Biochemistry 52 (44) 7798-7806 [2013-11-05; online 2013-10-23]
A short C-terminal tail prevents mis-targeting of hydrophobic mitochondrial membrane proteins to the ER.
Reithinger JH, Yim C, Park K, ..., von Heijne G, Kim H
FEBS Lett. 587 (21) 3480-3486 [2013-11-01; online 2013-09-18]
Variants at multiple loci implicated in both innate and adaptive immune responses are associated with Sjögren's syndrome.
Lessard CJ, Li H, Adrianto I, ..., Harley JB, Sivils KL
Nat. Genet. 45 (11) 1284-1292 [2013-11-00; online 2013-10-06]
Towards a unified paradigm for sequence-based identification of fungi.
Kõljalg U, Nilsson RH, Abarenkov K, ..., Weiss M, Larsson KH
Mol. Ecol. 22 (21) 5271-5277 [2013-11-00; online 2013-09-24]
DDLS Fellow Johan Bengtsson-Palme
Serum endostatin and risk of mortality in the elderly: findings from 2 community-based cohorts.
Ärnlöv J, Ruge T, Ingelsson E, ..., Sundström J, Lind L
Arterioscler. Thromb. Vasc. Biol. 33 (11) 2689-2695 [2013-11-00; online 2013-09-12]
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.
't Hoen PA, Friedländer MR, Almlöf J, ..., Dermitzakis ET, Lappalainen T
Nat. Biotechnol. 31 (11) 1015-1022 [2013-11-00; online 2013-09-15]
Rapid and deep human proteome analysis by single-dimension shotgun proteomics.
Pirmoradian M, Budamgunta H, Chingin K, ..., Astorga-Wells J, Zubarev RA
Mol. Cell Proteomics 12 (11) 3330-3338 [2013-11-00; online 2013-07-22]
Proline substitution independently enhances H-2D(b) complex stabilization and TCR recognition of melanoma-associated peptides.
Uchtenhagen H, Abualrous ET, Stahl E, ..., Nygren PÅ, Achour A
Eur. J. Immunol. 43 (11) 3051-3060 [2013-11-00; online 2013-08-30]
Molecular biomarkers of neurodegeneration.
Höglund K, Salter H
Expert Rev. Mol. Diagn. 13 (8) 845-861 [2013-11-00; online 2013-10-25]
Heritability of objectively assessed daily physical activity and sedentary behavior.
den Hoed M, Brage S, Zhao JH, ..., Wareham NJ, Loos RJ
Am. J. Clin. Nutr. 98 (5) 1317-1325 [2013-11-00; online 2013-09-18]
Functional validation of virtual screening for novel agents with general anesthetic action at ligand-gated ion channels.
Heusser SA, Howard RJ, Borghese CM, ..., Carlsson J, Harris RA
Molecular Pharmacology 84 (5) 670-678 [2013-11-00; online 2013-08-15]
Discovery and refinement of loci associated with lipid levels.
Willer CJ, Schmidt EM, Sengupta S, ..., Abecasis GR, Global Lipids Genetics Consortium
Nat. Genet. 45 (11) 1274-1283 [2013-11-00; online 2013-10-06]
Deregulation of hyaluronan synthesis, degradation and binding promotes breast cancer.
Heldin P, Basu K, Olofsson B, ..., Kozlova I, Kahata K
J. Biochem. 154 (5) 395-408 [2013-11-00; online 2013-10-03]
Comparative drug pair screening across multiple glioblastoma cell lines reveals novel drug-drug interactions.
Schmidt L, Kling T, Monsefi N, ..., Gerlee P, Nelander S
Neuro-oncology 15 (11) 1469-1478 [2013-11-00; online 2013-10-06]
Common variants associated with plasma triglycerides and risk for coronary artery disease.
Do R, Willer CJ, Schmidt EM, ..., Neale BM, Kathiresan S
Nat. Genet. 45 (11) 1345-1352 [2013-11-00; online 2013-10-06]
Association of genes in the NF-κB pathway with antibody-positive primary Sjögren's syndrome.
Nordmark G, Wang C, Vasaitis L, ..., Syvänen AC, UK Primary Sjögren’s Syndrome Registry
Scand. J. Immunol. 78 (5) 447-454 [2013-11-00; online 2013-08-16]
Antibodies biotinylated using a synthetic Z-domain from protein A provide stringent in situ protein detection.
Andersson S, Konrad A, Ashok N, ..., Hober S, Asplund A
J. Histochem. Cytochem. 61 (11) 773-784 [2013-11-00; online 2013-08-06]
Serglycin is implicated in the promotion of aggressive phenotype of breast cancer cells.
Korpetinou A, Skandalis SS, Moustakas A, ..., Karamanos NK, Theocharis AD
PLoS ONE 8 (10) e78157 [2013-10-31; online 2013-10-31]
Developmental expression of IL-33 in the mouse brain.
Wicher G, Husic E, Nilsson G, Forsberg-Nilsson K
Neurosci. Lett. 555 (-) 171-176 [2013-10-25; online 2013-09-27]
CGGBP1 phosphorylation constitutes a telomere-protection signal.
Singh U, Maturi V, Jones RE, ..., Baird DM, Westermark B
Cell Cycle 13 (1) 96-105 [2013-10-23; online 2013-10-23]
Complexation and sequestration of BMP-2 from an ECM mimetic hyaluronan gel for improved bone formation.
Kisiel M, Klar AS, Ventura M, ..., Cool SM, Hilborn J
PLoS ONE 8 (10) e78551 [2013-10-22; online 2013-10-22]
Quantitative synteny scoring improves homology inference and partitioning of gene families.
Ali RH, Muhammad S, Khan M, Arvestad L
BMC Bioinformatics 14 Suppl 15 (Suppl 15) S12 [2013-10-15; online 2013-10-15]
Genome-wide probabilistic reconciliation analysis across vertebrates.
Mahmudi O, Sjöstrand J, Sennblad B, Lagergren J
BMC Bioinformatics 14 Suppl 15 (Suppl 15) S10 [2013-10-15; online 2013-10-15]
Damage-induced DNA replication stalling relies on MAPK-activated protein kinase 2 activity.
Köpper F, Bierwirth C, Schön M, ..., Schön MP, Dobbelstein M
Proc. Natl. Acad. Sci. U.S.A. 110 (42) 16856-16861 [2013-10-15; online 2013-09-30]
Integration of cardiac proteome biology and medicine by a specialized knowledgebase.
Zong NC, Li H, Li H, ..., Hermjakob H, Ping P
Circ. Res. 113 (9) 1043-1053 [2013-10-12; online 2013-08-21]
Chemical fragmentation for massively parallel sequencing library preparation.
Gyarmati P, Song Y, Hällman J, Käller M
J. Biotechnol. 168 (1) 95-100 [2013-10-10; online 2013-08-27]
Quantification of Solvent Contribution to the Stability of Noncovalent Complexes.
Zhang H, Tan T, Hetényi C, van der Spoel D
J. Chem. Theory Comput. 9 (10) 4542-4551 [2013-10-08; online 2013-09-19]
Nonparametric Bayesian evaluation of differential protein quantification.
Serang O, Cansizoglu AE, Käll L, Steen H, Steen JA
J. Proteome Res. 12 (10) 4556-4565 [2013-10-04; online 2013-09-11]
Crystal structure of Na+, K(+)-ATPase in the Na(+)-bound state.
Nyblom M, Poulsen H, Gourdon P, ..., Fedosova N, Nissen P
Science (New York, N.Y.) 342 (6154) 123-127 [2013-10-04; online 2013-09-19]
Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells.
Wang X, Jiang L, Wallerman O, ..., Andersson L, Welsh N
Proc. Natl. Acad. Sci. U.S.A. 110 (40) 15997-16002 [2013-10-01; online 2013-09-16]
Neuropsychiatric deep brain stimulation for translational neuroimaging.
Höflich A, Savli M, Comasco E, ..., Kasper S, Lanzenberger R
NeuroImage 79 (-) 30-41 [2013-10-01; online 2013-04-28]
Erika Comasco SciLifeLab Fellow
T-cell responses after haematopoietic stem cell transplantation for aggressive relapsing-remitting multiple sclerosis.
Burman J, Fransson M, Tötterman TH, ..., Mangsbo SM, Loskog AS
Immunology 140 (2) 211-219 [2013-10-00; online 2013-06-01]
Prostasomes from four different species are able to produce extracellular adenosine triphosphate (ATP).
Ronquist KG, Ek B, Morrell J, ..., Ronquist G, Larsson A
Biochim. Biophys. Acta 1830 (10) 4604-4610 [2013-10-00; online 2013-05-22]
Pleiotropic effects of obesity-susceptibility loci on metabolic traits: a meta-analysis of up to 37,874 individuals.
van Vliet-Ostaptchouk JV, den Hoed M, Luan J, ..., Snieder H, Loos RJ
Diabetologia 56 (10) 2134-2146 [2013-10-00; online 2013-07-05]
Multiplex detection of antibiotic resistance genes using padlock probes.
Barišić I, Schoenthaler S, Ke R, ..., Noehammer C, Wiesinger-Mayr H
Diagn. Microbiol. Infect. Dis. 77 (2) 118-125 [2013-10-00; online 2013-08-12]
Heart research advances using database search engines, Human Protein Atlas and the Sydney Heart Bank.
Li A, Estigoy C, Raftery M, ..., Lal S, Dos Remedios CG
Heart Lung Circ 22 (10) 819-826 [2013-10-00; online 2013-07-13]
A comparison of reduced coordinate sets for describing protein structure.
Hinsen K, Hu S, Kneller GR, Niemi AJ
J Chem Phys 139 (12) 124115 [2013-09-28; online 2013-10-05]
Transcriptome and genome sequencing uncovers functional variation in humans.
Lappalainen T, Sammeth M, Friedländer MR, ..., Estivill X, Dermitzakis ET
Nature 501 (7468) 506-511 [2013-09-26; online 2013-09-15]
FHOD1, a formin upregulated in epithelial-mesenchymal transition, participates in cancer cell migration and invasion.
Gardberg M, Kaipio K, Lehtinen L, ..., Koivisto M, Carpén O
PLoS ONE 8 (9) e74923 [2013-09-26; online 2013-09-26]
Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia.
Nordlund J, Bäcklin CL, Wahlberg P, ..., Lönnerholm G, Syvänen AC
Genome Biol. 14 (9) r105 [2013-09-24; online 2013-09-24]
Peak Finder Metaserver - a novel application for finding peaks in ChIP-seq data.
Kruczyk M, Umer HM, Enroth S, Komorowski J
BMC Bioinformatics 14 (-) 280 [2013-09-23; online 2013-09-23]
A metagenomics transect into the deepest point of the Baltic Sea reveals clear stratification of microbial functional capacities.
Thureborn P, Lundin D, Plathan J, ..., Sjöberg BM, Sjöling S
PLoS ONE 8 (9) e74983 [2013-09-23; online 2013-09-23]
Ebsulfur is a benzisothiazolone cytocidal inhibitor targeting the trypanothione reductase of Trypanosoma brucei.
Lu J, Vodnala SK, Gustavsson AL, ..., Rottenberg ME, Holmgren A
J Biol Chem 288 (38) 27456-27468 [2013-09-20; online 2013-07-29]
E2F-7 couples DNA damage-dependent transcription with the DNA repair process.
Zalmas LP, Coutts AS, Helleday T, La Thangue NB
Cell Cycle 12 (18) 3037-3051 [2013-09-15; online 2013-08-20]
Blood plasma IgG Fc glycans are significantly altered in Alzheimer's disease and progressive mild cognitive impairment.
Lundström SL, Yang H, Lyutvinskiy Y, ..., Soininen H, Zubarev RA
J. Alzheimers Dis. 38 (3) 567-579 [2013-09-14; online 2013-09-14]
Genomic identification of founding haplotypes reveals the history of the selfing species Capsella rubella.
Brandvain Y, Slotte T, Hazzouri KM, Wright SI, Coop G
PLoS Genet 9 (9) e1003754 [2013-09-12; online 2013-09-12]
Efficient TGFβ-induced epithelial-mesenchymal transition depends on hyaluronan synthase HAS2.
Porsch H, Bernert B, Mehić M, ..., Heldin CH, Heldin P
Oncogene 32 (37) 4355-4365 [2013-09-12; online 2012-10-29]
Coordination of TGF-β signaling by ubiquitylation.
Moustakas A, Heldin CH
Mol. Cell 51 (5) 555-556 [2013-09-12; online 2013-09-17]
Association dynamics and linear and nonlinear optical properties of an N-acetylaladanamide probe in a POPC membrane.
Murugan NA, Apostolov R, Rinkevicius Z, ..., Lindahl E, Ågren H
Journal of the American Chemical Society 135 (36) 13590-13597 [2013-09-11; online 2013-08-29]
Spatial distribution of DARPP-32 in dendritic spines.
Blom H, Rönnlund D, Scott L, ..., Aperia A, Brismar H
PLoS ONE 8 (9) e75155 [2013-09-10; online 2013-09-10]
Gray matter is targeted in first-attack multiple sclerosis.
Schutzer SE, Angel TE, Liu T, ..., Smith RD, Coyle PK
PLoS ONE 8 (9) e66117 [2013-09-10; online 2013-09-10]
A tosyl-activated magnetic bead cellulose as solid support for sensitive protein detection.
Yan J, Horák D, Lenfeld J, Hammond M, Kamali-Moghaddam M
J. Biotechnol. 167 (3) 235-240 [2013-09-10; online 2013-06-27]
Pre-Columbian origins of Native American dog breeds, with only limited replacement by European dogs, confirmed by mtDNA analysis.
van Asch B, Zhang AB, Oskarsson MC, ..., Amorim A, Savolainen P
Proc. Biol. Sci. 280 (1766) 20131142 [2013-09-07; online 2013-09-07]
Quantitative proteomics profiling of primary lung adenocarcinoma tumors reveals functional perturbations in tumor metabolism.
Pernemalm M, De Petris L, Branca RM, ..., Lewensohn R, Lehtiö J
J. Proteome Res. 12 (9) 3934-3943 [2013-09-06; online 2013-08-13]
Role of individual MARK isoforms in phosphorylation of tau at Ser²⁶² in Alzheimer's disease.
Gu GJ, Lund H, Wu D, ..., Sunnemark D, Kamali-Moghaddam M
Neuromolecular Med. 15 (3) 458-469 [2013-09-00; online 2013-05-12]
Perceived stress at work is associated with attenuated DHEA-S response during acute psychosocial stress.
Lennartsson AK, Theorell T, Kushnir MM, Bergquist J, Jonsdottir IH
Psychoneuroendocrinology 38 (9) 1650-1657 [2013-09-00; online 2013-02-18]
Oxymorphone active uptake at the blood-brain barrier and population modeling of its pharmacokinetic-pharmacodynamic relationship.
Sadiq MW, Boström E, Keizer R, Björkman S, Hammarlund-Udenaes M
J Pharm Sci 102 (9) 3320-3331 [2013-09-00; online 2013-03-05]
Ouabain protects against Shiga toxin-triggered apoptosis by reversing the imbalance between Bax and Bcl-xL.
Burlaka I, Liu XL, Rebetz J, ..., Karpman D, Aperia A
J. Am. Soc. Nephrol. 24 (9) 1413-1423 [2013-09-00; online 2013-06-06]
One kilometer (1 km) electric solar wind sail tether produced automatically.
Seppänen H, Rauhala T, Kiprich S, ..., Janhunen P, Hæggström E
Rev Sci Instrum 84 (9) 095102 [2013-09-00; online 2013-10-05]
NOD2-mediated innate immune signaling regulates the eicosanoids in atherosclerosis.
Liu HQ, Zhang XY, Edfeldt K, ..., Hansson GK, Yan ZQ
Arterioscler. Thromb. Vasc. Biol. 33 (9) 2193-2201 [2013-09-00; online 2013-07-18]
Multilocus genetic risk scores for coronary heart disease prediction.
Ganna A, Magnusson PK, Pedersen NL, ..., Hamsten A, Ingelsson E
Arterioscler. Thromb. Vasc. Biol. 33 (9) 2267-2272 [2013-09-00; online 2013-05-16]
In situ sequencing for RNA analysis in preserved tissue and cells.
Ke R, Mignardi M, Pacureanu A, ..., Wählby C, Nilsson M
Nat. Methods 10 (9) 857-860 [2013-09-00; online 2013-07-14]
Global DNA hypermethylation is associated with high serum levels of persistent organic pollutants in an elderly population.
Lind L, Penell J, Luttropp K, ..., Ingelsson E, Lind PM
Environ Int 59 (-) 456-461 [2013-09-00; online 2013-08-09]
Genome-wide association study identifies ephrin type A receptors implicated in paclitaxel induced peripheral sensory neuropathy.
Leandro-García LJ, Inglada-Pérez L, Pita G, ..., Gréen H, Rodríguez-Antona C
J. Med. Genet. 50 (9) 599-605 [2013-09-00; online 2013-06-17]
Genes identified in Asian SLE GWASs are also associated with SLE in Caucasian populations.
Wang C, Ahlford A, Järvinen TM, ..., Syvänen AC, Sandling JK
Eur. J. Hum. Genet. 21 (9) 994-999 [2013-09-00; online 2012-12-19]
Autoantibody profiling in multiple sclerosis using arrays of human protein fragments.
Ayoglu B, Häggmark A, Khademi M, ..., Schwenk JM, Nilsson P
Mol. Cell Proteomics 12 (9) 2657-2672 [2013-09-00; online 2013-06-03]
ABCB1 gene polymorphisms are associated with suicide in forensic autopsies.
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ChemMedChem 8 (8) 1283-1294 [2013-08-00; online 2013-06-19]
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Cyclooxygenase-2
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Oncoimmunology 2 (8) e25157 [2013-08-00; online 2014-10-27]
SciLifeLab Fellow Yumeng Mao
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Karim H, Bogason A, Bhuiyan H, ..., Lafolie P, Vitols S
Curr Drug Deliv 10 (4) 404-412 [2013-08-00; online 2012-10-16]
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Antibody-based profiling of cerebrospinal fluid within multiple sclerosis.
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Proteomics 13 (15) 2256-2267 [2013-08-00; online 2013-06-25]
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PLoS ONE 8 (7) e68598 [2013-07-25; online 2013-07-25]
Gene × physical activity interactions in obesity: combined analysis of 111,421 individuals of European ancestry.
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PLoS Genet 9 (7) e1003607 [2013-07-25; online 2013-07-25]
Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer.
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PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing data.
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PLoS ONE 8 (7) e70388 [2013-07-23; online 2013-07-23]
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
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Gigascience 2 (1) 10 [2013-07-22; online 2013-07-22]
Modeling catalytic promiscuity in the alkaline phosphatase superfamily.
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Phys Chem Chem Phys 15 (27) 11160-11177 [2013-07-21; online 2013-06-03]
Arabidopsis MSI1 connects LHP1 to PRC2 complexes.
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EMBO J. 32 (14) 2073-2085 [2013-07-17; online 2013-06-18]
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Improving precision of proximity ligation assay by amplified single molecule detection.
Ke R, Nong RY, Fredriksson S, Landegren U, Nilsson M
PLoS ONE 8 (7) e69813 [2013-07-16; online 2013-07-16]
PconsC: combination of direct information methods and alignments improves contact prediction.
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Bioinformatics 29 (14) 1815-1816 [2013-07-15; online 2013-05-08]
PHAISTOS: a framework for Markov chain Monte Carlo simulation and inference of protein structure.
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Lessons from functional analysis of genome-wide association studies.
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Cancer Res. 73 (14) 4180-4184 [2013-07-15; online 2013-07-05]
Structure-based Discovery of Antagonists of Nuclear Receptor LRH-1
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J. Biol. Chem. 288 (27) 19830-19844 [2013-07-05; online 2013-05-10]
Jens Carlsson SciLifeLab Fellow
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, ..., Wang J, Willerslev E
Nature 499 (7456) 74-78 [2013-07-04; online 2013-06-26]
Podocalyxin-like protein expression in primary colorectal cancer and synchronous lymph node metastases.
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The Capsella rubella genome and the genomic consequences of rapid mating system evolution.
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Tau-tubulin kinase 1 expression, phosphorylation and co-localization with phospho-Ser422 tau in the Alzheimer's disease brain.
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Molecular profiling reveals prognostically significant subtypes of canine lymphoma.
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Vet. Pathol. 50 (4) 693-703 [2013-07-00; online 2012-11-02]
MGclus: network clustering employing shared neighbors.
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Mol Biosyst 9 (7) 1670-1675 [2013-07-00; online 2013-02-11]
Homologous recombination mediates cellular resistance and fraction size sensitivity to radiation therapy.
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Defining, comparing, and improving iTRAQ quantification in mass spectrometry proteomics data.
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Mol. Cell Proteomics 12 (7) 2021-2031 [2013-07-00; online 2013-03-07]
DNA methylation: the future of crime scene investigation?
Gršković B, Zrnec D, Vicković S, Popović M, Mršić G
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Comparative genomics as a tool to understand evolution and disease.
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Genome Res 23 (7) 1063-1068 [2013-07-00; online 2013-07-03]
Combining CAR T cells and the Bcl-2 family apoptosis inhibitor ABT-737 for treating B-cell malignancy.
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Active nitrogen-fixing heterotrophic bacteria at and below the chemocline of the central Baltic Sea.
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ISME J 7 (7) 1413-1423 [2013-07-00; online 2013-02-28]
ANGPT2 promoter methylation is strongly associated with gene expression and prognosis in chronic lymphocytic leukemia.
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A facile and efficient synthesis of tetrahydro-β-carbolines
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Tetrahedron Letters 54 (27) 3554-3557 [2013-07-00; online 2013-07-00]
GenPhyloData: realistic simulation of gene family evolution.
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Continuous Aging of the Human DNA Methylome Throughout the Human Lifespan.
Johansson A, Enroth S, Gyllensten U
PLoS ONE 8 (6) e67378 [2013-06-27; online 2013-06-27]
The role of adiposity in cardiometabolic traits: a Mendelian randomization analysis.
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Vandetanib combined with a p38 MAPK inhibitor synergistically reduces glioblastoma cell survival.
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MYC inhibition induces metabolic changes leading to accumulation of lipid droplets in tumor cells.
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Shahrabi Farahani H, Lagergren J
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Hieranoid: hierarchical orthology inference.
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Membranous expression of podocalyxin-like protein is an independent factor of poor prognosis in urothelial bladder cancer.
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Evolutionary consequences of self-fertilization in plants.
Wright SI, Kalisz S, Slotte T
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Contribution of antibody-based protein profiling to the human Chromosome-centric Proteome Project (C-HPP).
Fagerberg L, Oksvold P, Skogs M, ..., von Feilitzen K, Uhlén M
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Orbitrap mass spectrometry.
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The impact of splicing on protein domain architecture.
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The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study.
Quince C, Lundin EE, Andreasson AN, ..., Engstrand L, D'Amato M
Gut 62 (6) 952-954 [2013-06-00; online 2013-01-07]
Quantitative intact proteomics investigations of alveolar macrophages in sarcoidosis.
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Eur. Respir. J. 41 (6) 1331-1339 [2013-06-00; online 2012-10-11]
Prognostic significance in breast cancer of a gene signature capturing stromal PDGF signaling.
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Parallel visualization of multiple protein complexes in individual cells in tumor tissue.
Leuchowius KJ, Clausson CM, Grannas K, ..., Landegren U, Söderberg O
Mol. Cell Proteomics 12 (6) 1563-1571 [2013-06-00; online 2013-02-22]
Molecular consequences of animal breeding.
Andersson L
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Metabolic engineering of yeast for production of fuels and chemicals.
Nielsen J, Larsson C, van Maris A, Pronk J
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Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse.
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Mol. Cell Proteomics 12 (6) 1709-1722 [2013-06-00; online 2013-02-22]
Identification of heart rate-associated loci and their effects on cardiac conduction and rhythm disorders.
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Nat. Genet. 45 (6) 621-631 [2013-06-00; online 2013-04-14]
Dynamin inhibitors impair endocytosis and mitogenic signaling of PDGF.
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Traffic 14 (6) 725-736 [2013-06-00; online 2013-03-12]
Coronary heart disease in systemic lupus erythematosus is associated with interferon regulatory factor-8 gene variants.
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Contribution of IKBKE and IFIH1 gene variants to SLE susceptibility.
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Consequences of membrane topography.
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Advanced biofuel production by the yeast Saccharomyces cerevisiae.
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5-Aza-2'-deoxycytidine causes replication lesions that require Fanconi anemia-dependent homologous recombination for repair.
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The Norway spruce genome sequence and conifer genome evolution.
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Nature 497 (7451) 579-584 [2013-05-30; online 2013-05-22]
Metagenomic de novo assembly of an aquatic representative of the verrucomicrobial class Spartobacteria.
Herlemann DP, Lundin D, Labrenz M, ..., Aspeborg H, Andersson AF
MBio 4 (3) e00569-e00512 [2013-05-28; online 2013-05-28]
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Unsupervised genome-wide recognition of local relationship patterns.
Zamani N, Russell P, Lantz H, ..., Jern P, Grabherr MG
BMC Genomics 14 (-) 347 [2013-05-24; online 2013-05-24]
Prediction of clinically relevant safety signals of nephrotoxicity through plasma metabolite profiling.
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The genomics of selection in dogs and the parallel evolution between dogs and humans.
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Nat Commun 4 (-) 1860 [2013-05-16; online 2013-05-16]
Ultra-rare mutation in long-range enhancer predisposes to thyroid carcinoma with high penetrance.
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PLoS ONE 8 (5) e61920 [2013-05-14; online 2013-05-14]
Adaptive mutations and replacements of virulence traits in the Escherichia coli O104:H4 outbreak population.
Guy L, Jernberg C, Arvén Norling J, ..., Engstrand L, Andersson SG
PLoS ONE 8 (5) e63027 [2013-05-10; online 2013-05-10]
On the role of thermal backbone fluctuations in myoglobin ligand gate dynamics.
Krokhotin A, Niemi AJ, Peng X
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No ancient DNA damage in Actinobacteria from the Neanderthal bone.
Zaremba-Niedźwiedzka K, Andersson SG
PLoS ONE 8 (5) e62799 [2013-05-03; online 2013-05-03]
The zebrafish orthologue of the dyslexia candidate gene DYX1C1 is essential for cilia growth and function.
Chandrasekar G, Vesterlund L, Hultenby K, Tapia-Páez I, Kere J
PLoS ONE 8 (5) e63123 [2013-05-01; online 2013-05-01]
Genome-wide association study of susceptibility loci for cervical cancer.
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Alterations in the motor neuron-renshaw cell circuit in the Sod1(G93A) mouse model.
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Stronger signal of recent selection for lactase persistence in Maasai than in Europeans.
Schlebusch CM, Sjödin P, Skoglund P, Jakobsson M
Eur. J. Hum. Genet. 21 (5) 550-553 [2013-05-00; online 2012-09-05]
Optimal sparsity criteria for network inference.
Tjärnberg A, Nordling TE, Studham M, Sonnhammer EL
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Membrane protein shaving with thermolysin can be used to evaluate topology predictors.
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Proteomics 13 (9) 1467-1480 [2013-05-00; online 2013-03-21]
Glycoprotein 130 promotes human blastocyst development in vitro.
Hambiliki F, Hanrieder J, Bergquist J, ..., Stavreus-Evers A, Wånggren K
Fertil. Steril. 99 (6) 1592-1599 [2013-05-00; online 2013-01-30]
Global microRNA profiling of well-differentiated small intestinal neuroendocrine tumors.
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Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
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Genome-wide analysis in German shepherd dogs reveals association of a locus on CFA 27 with atopic dermatitis.
Tengvall K, Kierczak M, Bergvall K, ..., Hedhammar Å, Lindblad-Toh K
PLoS Genet 9 (5) e1003475 [2013-05-00; online 2013-05-09]
ABCB1 gene polymorphisms are associated with fatal intoxications involving venlafaxine but not citalopram.
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GAM-NGS: genomic assemblies merger for next generation sequencing.
Vicedomini R, Vezzi F, Scalabrin S, Arvestad L, Policriti A
BMC Bioinformatics 14 Suppl 7 (Suppl 7) S6 [2013-04-22; online 2013-04-22]
Detection of rifampicin resistance in Mycobacterium tuberculosis by padlock probes and magnetic nanobead-based readout.
Engström A, Zardán Gómez de la Torre T, Strømme M, Nilsson M, Herthnek D
PLoS ONE 8 (4) e62015 [2013-04-22; online 2013-04-22]
Lab-on-DVD: standard DVD drives as a novel laser scanning microscope for image based point of care diagnostics.
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Lab Chip 13 (8) 1578-1585 [2013-04-21; online 2013-02-27]
An N-terminal SIAH-interacting motif regulates the stability of the ubiquitin specific protease (USP)-19.
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The African coelacanth genome provides insights into tetrapod evolution.
Amemiya CT, Alföldi J, Lee AP, ..., Meyer A, Lindblad-Toh K
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Pseudomonas aeruginosa disrupts Caenorhabditis elegans iron homeostasis, causing a hypoxic response and death.
Kirienko NV, Kirienko DR, Larkins-Ford J, ..., Ruvkun G, Ausubel FM
Cell Host Microbe 13 (4) 406-416 [2013-04-17; online 2013-04-23]
Photoconversion of bodipy-labeled lipid analogues.
Sezgin E, Chwastek G, Aydogan G, ..., Simons K, Schwille P
Chembiochem 14 (6) 695-698 [2013-04-15; online 2013-03-19]
Erdinc Sezgin SciLifeLab Fellow
Conduction in a Biological Sodium Selective Channel
Stock L, Delemotte L, Carnevale V, Treptow W, Klein ML
J. Phys. Chem. B 117 (14) 3782-3789 [2013-04-11; online 2013-03-27]
Lucie Delemotte SciLifeLab Fellow
The network organization of cancer-associated protein complexes in human tissues.
Zhao J, Lee SH, Huss M, Holme P
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The ESR1 gene is associated with risk for canine mammary tumours.
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BMC Vet. Res. 9 (-) 69 [2013-04-10; online 2013-04-10]
European H16N3 gull influenza virus attaches to the human respiratory tract and eye.
Lindskog C, Ellström P, Olsen B, ..., Kuiken T, Jourdain E
PLoS ONE 8 (4) e60757 [2013-04-08; online 2013-04-08]
The effects of 5-fluorouracil on the proteome of colon cancer cells.
Marin-Vicente C, Lyutvinskiy Y, Romans Fuertes P, Zubarev RA, Visa N
J. Proteome Res. 12 (4) 1969-1979 [2013-04-05; online 2013-03-21]
Genetic determinants of dabigatran plasma levels and their relation to bleeding.
Paré G, Eriksson N, Lehr T, ..., Yusuf S, Wallentin L
Circulation 127 (13) 1404-1412 [2013-04-02; online 2013-03-06]
RNA-binding protein QKI regulates Glial fibrillary acidic protein expression in human astrocytes.
Radomska KJ, Halvardson J, Reinius B, ..., Feuk L, Jazin E
Hum. Mol. Genet. 22 (7) 1373-1382 [2013-04-01; online 2013-01-15]
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.
Pronk S, Páll S, Schulz R, ..., Hess B, Lindahl E
Bioinformatics 29 (7) 845-854 [2013-04-01; online 2013-02-13]
Coalescent-based genome analyses resolve the early branches of the euarchontoglires.
Kumar V, Hallström BM, Janke A
PLoS ONE 8 (4) e60019 [2013-04-01; online 2013-04-01]
p53 regulates epithelial-mesenchymal transition induced by transforming growth factor β.
Termén S, Tan EJ, Heldin CH, Moustakas A
J. Cell. Physiol. 228 (4) 801-813 [2013-04-00; online 2012-09-29]
Welander distal myopathy caused by an ancient founder mutation in TIA1 associated with perturbed splicing.
Klar J, Sobol M, Melberg A, ..., Casar-Borota O, Dahl N
Hum. Mutat. 34 (4) 572-577 [2013-04-00; online 2013-01-26]
The mitochondrial and autosomal mutation landscapes of prostate cancer.
Lindberg J, Mills IG, Klevebring D, ..., Egevad L, Grönberg H
Eur. Urol. 63 (4) 702-708 [2013-04-00; online 2012-12-05]
Targeting HMG-CoA reductase with statins in a window-of-opportunity breast cancer trial.
Bjarnadottir O, Romero Q, Bendahl PO, ..., Grabau D, Borgquist S
Breast Cancer Res. Treat. 138 (2) 499-508 [2013-04-00; online 2013-03-08]
Pulmonary delivery of d-methionine is associated with an increase in ALCAR and glutathione in cochlear fluids.
Grondin Y, Cotanche DA, Manneberg O, ..., Jackson RL, Rogers RA
Hear. Res. 298 (-) 93-103 [2013-04-00; online 2013-01-04]
P-cadherin functional role is dependent on E-cadherin cellular context: a proof of concept using the breast cancer model.
Ribeiro AS, Sousa B, Carreto L, ..., Schmitt F, Paredes J
J. Pathol. 229 (5) 705-718 [2013-04-00; online 2013-01-24]
Live cell imaging in a micro-array of acoustic traps facilitates quantification of natural killer cell heterogeneity.
Christakou AE, Ohlin M, Vanherberghen B, ..., Wiklund M, Önfelt B
Integr Biol (Camb) 5 (4) 712-719 [2013-04-00; online 2013-02-26]
Immunofluorescence and fluorescent-protein tagging show high correlation for protein localization in mammalian cells.
Stadler C, Rexhepaj E, Singan VR, ..., Simpson JC, Lundberg E
Nat. Methods 10 (4) 315-323 [2013-04-00; online 2013-02-24]
Hereditary uveal melanoma: a report of a germline mutation in BAP1.
Höiom V, Edsgärd D, Helgadottir H, ..., Emanuelsson O, Hansson J
Genes Chromosomes Cancer 52 (4) 378-384 [2013-04-00; online 2013-01-23]
Cycling of RNAs on Hfq.
Wagner EG
RNA Biol 10 (4) 619-626 [2013-04-00; online 2013-03-06]
Comparative genomics of Wolbachia and the bacterial species concept.
Ellegaard KM, Klasson L, Näslund K, Bourtzis K, Andersson SG
PLoS Genet 9 (4) e1003381 [2013-04-00; online 2013-04-04]
Changes in mortality and causes of death in the Swedish Down syndrome population.
Englund A, Jonsson B, Zander CS, Gustafsson J, Annerén G
Am. J. Med. Genet. A 161A (4) 642-649 [2013-04-00; online 2013-02-22]
A calreticulin/gC1qR complex prevents cells from dying: a conserved mechanism from arthropods to humans.
Watthanasurorot A, Jiravanichpaisal P, Söderhäll K, Söderhäll I
J Mol Cell Biol 5 (2) 120-131 [2013-04-00; online 2013-01-31]
Response to comment on "Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage".
Hailer F, Kutschera VE, Hallström BM, ..., Arnason U, Janke A
Science (New York, N.Y.) 339 (6127) 1522 [2013-03-29; online 2013-09-18]
Genetic variants from lipid-related pathways and risk for incident myocardial infarction.
Song C, Pedersen NL, Reynolds CA, ..., Prince JA, Ingelsson E
PLoS ONE 8 (3) e60454 [2013-03-29; online 2013-03-29]
Genome-wide mechanisms of Smad binding.
Morikawa M, Koinuma D, Miyazono K, Heldin CH
Oncogene 32 (13) 1609-1615 [2013-03-28; online 2012-05-21]
Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue.
Mayrhofer M, DiLorenzo S, Isaksson A
Genome Biol. 14 (3) R24 [2013-03-25; online 2013-03-25]
ZBED evolution: repeated utilization of DNA transposons as regulators of diverse host functions.
Hayward A, Ghazal A, Andersson G, Andersson L, Jern P
PLoS ONE 8 (3) e59940 [2013-03-22; online 2013-03-22]
The genomic signature of dog domestication reveals adaptation to a starch-rich diet.
Axelsson E, Ratnakumar A, Arendt ML, ..., Hedhammar A, Lindblad-Toh K
Nature 495 (7441) 360-364 [2013-03-21; online 2013-01-23]
Integration of clinical data with a genome-scale metabolic model of the human adipocyte.
Mardinoglu A, Agren R, Kampf C, ..., Uhlen M, Nielsen J
Mol Syst Biol 9 (1) 649 [2013-03-21; online 2013-03-21]
Identification of genetic variants influencing the human plasma proteome.
Johansson Å, Enroth S, Palmblad M, ..., Bergquist J, Gyllensten U
Proc. Natl. Acad. Sci. U.S.A. 110 (12) 4673-4678 [2013-03-19; online 2013-03-04]
Structure of polymer and particle aggregates in hydrogel composites
Berts I, Gerelli Y, Hilborn J, Rennie AR
J. Polym. Sci. B Polym. Phys. 51 (6) 421-429 [2013-03-15; online 2012-12-18]
Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins.
Tammimies K, Vitezic M, Matsson H, ..., Kere J, Tapia-Páez I
Biol. Psychiatry 73 (6) 583-590 [2013-03-15; online 2012-10-01]
Human prostasomes express glycolytic enzymes with capacity for ATP production.
Ronquist KG, Ek B, Stavreus-Evers A, Larsson A, Ronquist G
Am. J. Physiol. Endocrinol. Metab. 304 (6) E576-E582 [2013-03-15; online 2013-01-22]
Castration therapy results in decreased Ku70 levels in prostate cancer.
Al-Ubaidi FL, Schultz N, Loseva O, ..., Granfors T, Helleday T
Clin. Cancer Res. 19 (6) 1547-1556 [2013-03-15; online 2013-01-24]
Transcriptome of the alternative ethanol production strain Dekkera bruxellensis CBS 11270 in sugar limited, low oxygen cultivation.
Tiukova IA, Petterson ME, Tellgren-Roth C, ..., Pettersson OV, Passoth V
PLoS ONE 8 (3) e58455 [2013-03-13; online 2013-03-13]
Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing.
Lundin S, Gruselius J, Nystedt B, ..., Käller M, Lundeberg J
Sci Rep 3 (-) 1186 [2013-03-09; online 2013-03-09]
TagGD: fast and accurate software for DNA Tag generation and demultiplexing.
Costea PI, Lundeberg J, Akan P
PLoS ONE 8 (3) e57521 [2013-03-04; online 2013-03-04]
The Epstein-Barr virus nuclear antigen-1 reprograms transcription by mimicry of high mobility group A proteins.
Coppotelli G, Mughal N, Callegari S, ..., Moustakas A, Masucci MG
Nucleic Acids Res. 41 (5) 2950-2962 [2013-03-01; online 2013-01-28]
An efficient method for genome-wide polyadenylation site mapping and RNA quantification
Wilkening S, Pelechano V, Järvelin AI, ..., Benes V, Steinmetz LM
Nucleic Acids Res. 41 (5) e65-e65 [2013-03-01; online 2013-01-07]
SciLifeLab Fellow Vicent Pelechano
MALDI imaging of post-mortem human spinal cord in amyotrophic lateral sclerosis.
Hanrieder J, Ekegren T, Andersson M, Bergquist J
J. Neurochem. 124 (5) 695-707 [2013-03-00; online 2013-01-28]
Ligand binding properties of human galanin receptors.
Jurkowski W, Yazdi S, Elofsson A
Mol. Membr. Biol. 30 (2) 206-216 [2013-03-00; online 2012-12-13]
Fine-mapping of restless legs locus 4 (RLS4) identifies a haplotype over the SPATS2L and KCTD18 genes.
Pichler I, Schwienbacher C, Zanon A, ..., Hicks AA, Pramstaller PP
J. Mol. Neurosci. 49 (3) 600-605 [2013-03-00; online 2012-10-02]
Effects of nicotine, its metabolites and tobacco extracts on human platelet function in vitro.
Ljungberg LU, Persson K, Eriksson AC, Green H, Whiss PA
Toxicol In Vitro 27 (2) 932-938 [2013-03-00; online 2013-01-11]
Dorsally derived spinal interneurons in locomotor circuits.
Vallstedt A, Kullander K
Ann. N. Y. Acad. Sci. 1279 (-) 32-42 [2013-03-00; online 2013-03-28]
Determination of the obesity-associated gene variants within the entire FTO gene by ultra-deep targeted sequencing in obese and lean children.
Sällman Almén M, Rask-Andersen M, Jacobsson JA, ..., Fredriksson R, Schiöth HB
Int J Obes (Lond) 37 (3) 424-431 [2013-03-00; online 2012-04-24]
Brain gene expression differences are associated with abnormal tail biting behavior in pigs.
Brunberg E, Jensen P, Isaksson A, Keeling LJ
Genes Brain Behav. 12 (2) 275-281 [2013-03-00; online 2012-12-07]
Anisotropic isolation by distance: the main orientations of human genetic differentiation.
Jay F, Sjödin P, Jakobsson M, Blum MG
Mol. Biol. Evol. 30 (3) 513-525 [2013-03-00; online 2012-11-20]
Replication stress links structural and numerical cancer chromosomal instability.
Burrell RA, McClelland SE, Endesfelder D, ..., Tomlinson IP, Swanton C
Nature 494 (7438) 492-496 [2013-02-28; online 2013-03-01]
Origin and evolution of medium chain alcohol dehydrogenases.
Jörnvall H, Hedlund J, Bergman T, ..., Cederlund E, Persson B
Chem. Biol. Interact. 202 (1-3) 91-96 [2013-02-25; online 2012-11-28]
Charge pair interactions in transmembrane helices and turn propensity of the connecting sequence promote helical hairpin insertion.
Bañó-Polo M, Martínez-Gil L, Wallner B, ..., Elofsson A, Mingarro I
J. Mol. Biol. 425 (4) 830-840 [2013-02-22; online 2012-12-07]
Classification of human natural killer cells based on migration behavior and cytotoxic response.
Vanherberghen B, Olofsson PE, Forslund E, ..., Mehr R, Önfelt B
Blood 121 (8) 1326-1334 [2013-02-21; online 2013-01-03]
Genetic susceptibility to non-necrotizing erysipelas/cellulitis.
Hannula-Jouppi K, Massinen S, Siljander T, ..., Syrjänen J, Kere J
PLoS ONE 8 (2) e56225 [2013-02-20; online 2013-02-20]
Gold-catalyzed addition of N-hydroxy heterocycles to alkynes and subsequent 3,3-sigmatropic rearrangement.
Kumar M, Scobie M, Mashuta MS, Hammond GB, Xu B
Org. Lett. 15 (4) 724-727 [2013-02-15; online 2013-02-04]
High-throughput hyperdimensional vertebrate phenotyping.
Pardo-Martin C, Allalou A, Medina J, ..., Wählby C, Fatih Yanik M
Nat Commun 4 (-) 1467 [2013-02-14; online 2013-02-14]
Insights into the evolution of Darwin's finches from comparative analysis of the Geospiza magnirostris genome sequence.
Rands CM, Darling A, Fujita M, ..., Abzhanov A, Ponting CP
BMC Genomics 14 (-) 95 [2013-02-12; online 2013-02-12]
Complex inheritance of melanoma and pigmentation of coat and skin in Grey horses.
Curik I, Druml T, Seltenhammer M, ..., Andersson L, Sölkner J
PLoS Genet 9 (2) e1003248 [2013-02-07; online 2013-02-07]
Proton Uptake and pKa Changes in the Uncoupled Asn139Cys Variant of Cytochrome c Oxidase
Johansson AL, Carlsson J, Högbom M, ..., Gennis RB, Brzezinski P
Biochemistry 52 (5) 827-836 [2013-02-05; online 2013-01-25]
Jens Carlsson SciLifeLab Fellow
The relationship between F(ST) and the frequency of the most frequent allele.
Jakobsson M, Edge MD, Rosenberg NA
Genetics 193 (2) 515-528 [2013-02-00; online 2012-11-19]
Olfactory receptor 51E1 protein as a potential novel tissue biomarker for small intestine neuroendocrine carcinomas.
Cui T, Tsolakis AV, Li SC, ..., Öberg K, Giandomenico V
Eur. J. Endocrinol. 168 (2) 253-261 [2013-02-00; online 2013-01-17]
In vitro and in vivo activities of 2-aminopyrazines and 2-aminopyridines in experimental models of human African trypanosomiasis.
Vodnala SK, Lundbäck T, Sjöberg B, ..., Rottenberg ME, Hammarström LG
Antimicrob. Agents Chemother. 57 (2) 1012-1018 [2013-02-00; online 2012-12-17]
Helicobacter pylori and the gastric microbiota.
Engstrand L, Lindberg M
Best Pract Res Clin Gastroenterol 27 (1) 39-45 [2013-02-00; online 2013-06-19]
Genotoxicity of alcohol is linked to DNA replication-associated damage and homologous recombination repair.
Kotova N, Vare D, Schultz N, ..., Helleday T, Jenssen D
Carcinogenesis 34 (2) 325-330 [2013-02-00; online 2012-11-03]
Free fatty acid determination in plasma by GC-MS after conversion to Weinreb amides.
Ubhayasekera SJ, Staaf J, Forslund A, Bergsten P, Bergquist J
Anal Bioanal Chem 405 (6) 1929-1935 [2013-02-00; online 2013-01-11]
Exome sequencing of prostate cancer supports the hypothesis of independent tumour origins.
Lindberg J, Klevebring D, Liu W, ..., Egevad L, Grönberg H
Eur. Urol. 63 (2) 347-353 [2013-02-00; online 2012-03-31]
Early cone setting in Picea abies acrocona is associated with increased transcriptional activity of a MADS box transcription factor.
Uddenberg D, Reimegård J, Clapham D, ..., Emanuelsson O, Sundström JF
Plant Physiol. 161 (2) 813-823 [2013-02-00; online 2012-12-07]
Adaptive filtering for enhancement of the osteocyte cell network in 3D microtomography images
Pacureanu A, Larrue A, Langer M, ..., Lafage-Proust MH, Peyrin F
IRBM 34 (1) 48-52 [2013-02-00; online 2013-02-00]
A versatile genome-scale PCR-based pipeline for high-definition DNA FISH
Bienko M, Crosetto N, Teytelman L, ..., Itzkovitz S, van Oudenaarden A
Nat Methods 10 (2) 122-124 [2013-02-00; online 2012-12-23]
Magda Bienko SciLifeLab Fellow
Workshop on laboratory protocol standards for the Molecular Methods Database.
Klingström T, Soldatova L, Stevens R, ..., Landegren U, Bongcam-Rudloff E
N Biotechnol 30 (2) 109-113 [2013-01-25; online 2012-06-02]
Protein tag-mediated conjugation of oligonucleotides to recombinant affinity binders for proximity ligation.
Gu GJ, Friedman M, Jost C, ..., Landegren U, Söderberg O
N Biotechnol 30 (2) 144-152 [2013-01-25; online 2012-06-02]
Multiplex protein detection with DNA readout via mass spectrometry.
Flanigon J, Kamali-Moghaddam M, Burbulis I, ..., Landegren U, Cantor C
N Biotechnol 30 (2) 153-158 [2013-01-25; online 2012-11-28]
A specific and essential role for Na,K-ATPase α3 in neurons co-expressing α1 and α3.
Azarias G, Kruusmägi M, Connor S, ..., Broberger C, Aperia A
J Biol Chem 288 (4) 2734-2743 [2013-01-25; online 2012-11-29]
Target selectivity of feedforward inhibition by striatal fast-spiking interneurons.
Szydlowski SN, Pollak Dorocic I, Planert H, ..., Meletis K, Silberberg G
J. Neurosci. 33 (4) 1678-1683 [2013-01-23; online 2013-01-25]
Iskra Pollak Dorocic SciLifeLab Fellow
Statistical assessment of crosstalk enrichment between gene groups in biological networks.
McCormack T, Frings O, Alexeyenko A, Sonnhammer EL
PLoS ONE 8 (1) e54945 [2013-01-23; online 2013-01-23]
Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomes.
Eckalbar WL, Hutchins ED, Markov GJ, ..., Huentelman MJ, Kusumi K
BMC Genomics 14 (-) 49 [2013-01-23; online 2013-01-23]
DNA methylation in the Neuropeptide S Receptor 1 (NPSR1) promoter in relation to asthma and environmental factors.
Reinius LE, Gref A, Sääf A, ..., Söderhäll C, Kere J
PLoS ONE 8 (1) e53877 [2013-01-23; online 2013-01-23]
Genomic insights into the atopic eczema-associated skin commensal yeast Malassezia sympodialis.
Gioti A, Nystedt B, Li W, ..., Heitman J, Scheynius A
MBio 4 (1) e00572-e00512 [2013-01-22; online 2013-01-22]
Affiliated researcher
A mouse mammary epithelial cell line permissive for highly efficient human adenovirus growth.
Wu C, Öberg D, Rashid A, ..., Akusjärvi G, Svensson C
Virology 435 (2) 363-371 [2013-01-20; online 2012-11-17]
Intraperitoneal influx of neutrophils in response to IL-33 is mast cell-dependent.
Enoksson M, Möller-Westerberg C, Wicher G, ..., Lunderius-Andersson C, Nilsson G
Blood 121 (3) 530-536 [2013-01-17; online 2012-10-23]
Exome RNA sequencing reveals rare and novel alternative transcripts.
Halvardson J, Zaghlool A, Feuk L
Nucleic Acids Res. 41 (1) e6 [2013-01-07; online 2012-08-31]
RNA deep sequencing as a tool for selection of cell lines for systematic subcellular localization of all human proteins.
Danielsson F, Wiking M, Mahdessian D, ..., Uhlén M, Lundberg E
J. Proteome Res. 12 (1) 299-307 [2013-01-04; online 2012-12-20]
Genetic variability among native dog breeds in Turkey
ERDOĞAN M, TEPELİ C, BRENIG B, ..., SAVOLAINEN P, ÖZBEYAZ C
Turkish Journal of Biology - (-) - [2013-01-01; online 2013-01-01]
Abstract B70: Generation of MAGE-A4 230-239 peptide-specific cytotoxic T lymphocytes using an alloreactive approach.
Lövgren T, Mao Y, Böschen ML, ..., Poschke I, Kiessling R
Cancer Res. 73 (1_Supplement) B70-B70 [2013-01-01; online 2014-04-02]
Reply: To PMID 22153774.
Abrahamsson TR, Jakobsson HE, Andersson AF, ..., Engstrand L, Jenmalm MC
J. Allergy Clin. Immunol. 131 (1) 248-249 [2013-01-00; online 2012-11-27]
Possible positive selection for an arsenic-protective haplotype in humans.
Schlebusch CM, Lewis CM, Vahter M, ..., Jakobsson M, Broberg K
Environ. Health Perspect. 121 (1) 53-58 [2013-01-00; online 2012-10-16]
MHC variability supports dog domestication from a large number of wolves: high diversity in Asia.
Niskanen AK, Hagström E, Lohi H, ..., Aspi J, Savolainen P
Heredity (Edinb) 110 (1) 80-85 [2013-01-00; online 2012-10-17]
Latent Regulatory Potential of Human-Specific Repetitive Elements
Ward MC, Wilson MD, Barbosa-Morais NL, ..., Blencowe BJ, Odom DT
Molecular Cell 49 (2) 262-272 [2013-01-00; online 2013-01-00]
Claudia Kutter SciLifeLab Fellow
Improving the osteogenic potential of BMP-2 with hyaluronic acid hydrogel modified with integrin-specific fibronectin fragment.
Kisiel M, Martino MM, Ventura M, ..., Hilborn J, Ossipov DA
Biomaterials 34 (3) 704-712 [2013-01-00; online 2012-10-24]
DNA damage response in peritumoral regions of oesophageal cancer microenvironment.
He H, Tian D, Guo J, ..., Su M, Ying S
Carcinogenesis 34 (1) 139-145 [2013-01-00; online 2012-10-01]
Triazolopyrimidinones as γ-secretase modulators: structure–activity relationship, modulator profile, and in vivo profiling
Yngve U, Paulsen K, Macsari I, ..., Klintenberg R, Arvidsson PI
Med. Chem. Commun. 4 (2) 422 [2013-00-00; online 2013-00-00]
A new concise synthesis of 2,3-dihydroquinazolin-4(1 )-one derivatives
Desroses M, Scobie M, Helleday T
New J. Chem. 37 (11) 3595-3597 [2013-00-00; online 2013-00-00]

Publications 9.5.1