High-throughput hyperdimensional vertebrate phenotyping.

Pardo-Martin C, Allalou A, Medina J, Eimon PM, Wählby C, Fatih Yanik M

Nat Commun 4 (-) 1467 [2013-02-14; online 2013-02-14]

Most gene mutations and biologically active molecules cause complex responses in animals that cannot be predicted by cell culture models. Yet animal studies remain too slow and their analyses are often limited to only a few readouts. Here we demonstrate high-throughput optical projection tomography with micrometre resolution and hyperdimensional screening of entire vertebrates in tens of seconds using a simple fluidic system. Hundreds of independent morphological features and complex phenotypes are automatically captured in three dimensions with unprecedented speed and detail in semitransparent zebrafish larvae. By clustering quantitative phenotypic signatures, we can detect and classify even subtle alterations in many biological processes simultaneously. We term our approach hyperdimensional in vivo phenotyping. To illustrate the power of hyperdimensional in vivo phenotyping, we have analysed the effects of several classes of teratogens on cartilage formation using 200 independent morphological measurements, and identified similarities and differences that correlate well with their known mechanisms of actions in mammals.

Affiliated researcher

QC bibliography QC xrefs

PubMed 23403568

DOI 10.1038/ncomms2475

Crossref 10.1038/ncomms2475


pmc PMC3573763

mid NIHMS435296