Publications 2011

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191 publications

PubMed DOI Crossref
Pegylated liposomal doxorubicin as first-line monotherapy in elderly women with locally advanced or metastatic breast cancer: novel treatment predictive factors identified.
Green H, Stål O, Bachmeier K, ..., Åleskog A, Malmström A
Cancer Lett. 313 (2) 145-153 [2011-12-27; online 2011-08-31]
Affiliated researcher
PubMed DOI Crossref
Cdc6 expression represses E-cadherin transcription and activates adjacent replication origins.
Sideridou M, Zakopoulou R, Evangelou K, ..., Moustakas A, Gorgoulis VG
J. Cell Biol. 195 (7) 1123-1140 [2011-12-26; online 2011-12-28]
Affiliated researcher
PubMed DOI Crossref
Multiple polymorphisms affect expression and function of the neuropeptide S receptor (NPSR1).
Anedda F, Zucchelli M, Schepis D, ..., Kere J, D'Amato M
PLoS ONE 6 (12) e29523 [2011-12-21; online 2011-12-21]
Affiliated researcher
PubMed DOI Crossref
Assessing recent smoking status by measuring exhaled carbon monoxide levels.
Sandberg A, Sköld CM, Grunewald J, Eklund A, Wheelock ÅM
PLoS ONE 6 (12) e28864 [2011-12-16; online 2011-12-16]
Affiliated researcher
PubMed DOI Crossref
Regulation of myosin light chain function by BMP signaling controls actin cytoskeleton remodeling.
Konstantinidis G, Moustakas A, Stournaras C
Cell. Physiol. Biochem. 28 (5) 1031-1044 [2011-12-15; online 2011-12-15]
Affiliated researcher
PubMed
Association between body mass index and insulin receptor substrate-4 (IRS-4) gene polymorphisms in patients with schizophrenia.
Melkersson K, Persson B
Neuro Endocrinol. Lett. 32 (5) 634-640 [2011-12-15; online 2011-12-15]
Affiliated researcher
PubMed DOI Crossref
Striated muscle as implantation site for transplanted pancreatic islets.
Espes D, Eriksson O, Lau J, Carlsson PO
Journal of transplantation 2011 (-) 352043 [2011-12-07; online 2011-12-07]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Decreased defluorination using the novel beta-cell imaging agent [18F]FE-DTBZ-d4 in pigs examined by PET.
Jahan M, Eriksson O, Johnström P, ..., Johansson L, Halldin C
EJNMMI Res 1 (1) 33 [2011-12-05; online 2011-12-05]
Olof Eriksson SciLifeLab Fellow
DOI Crossref
A disposable and multifunctional capsule for easy operation of microfluidic elastomer systems
Thorslund S, Nguyen H, Läräng T, Barkefors I, Kreuger J
J. Micromech. Microeng. 21 (12) 127001 [2011-12-01; online 2011-11-24]
Affiliated researcher
PubMed DOI Crossref
The pharmacogenetics of metformin and its impact on plasma metformin steady-state levels and glycosylated hemoglobin A1c.
Christensen MM, Brasch-Andersen C, Green H, ..., Beck-Nielsen H, Brosen K
Pharmacogenet. Genomics 21 (12) 837-850 [2011-12-00; online 2011-10-13]
Affiliated researcher
PubMed DOI Crossref
The Conserved Foot Domain of RNA Pol II Associates with Proteins Involved in Transcriptional Initiation and/or Early Elongation
García-López MC, Pelechano V, Mirón-García MC, ..., Pérez-Ortín JE, Navarro F
Genetics 189 (4) 1235-1248 [2011-12-00; online 2011-09-27]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Postpartum depressive symptoms and the BDNF Val66Met functional polymorphism: effect of season of delivery.
Comasco E, Sylvén SM, Papadopoulos FC, ..., Sundström-Poromaa I, Skalkidou A
Arch Womens Ment Health 14 (6) 453-463 [2011-12-00; online 2011-10-14]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Pathway-based analysis of genetic susceptibility to cervical cancer in situ: HLA-DPB1 affects risk in Swedish women.
Ivansson EL, Juko-Pecirep I, Erlich HA, Gyllensten UB
Genes Immun. 12 (8) 605-614 [2011-12-00; online 2011-06-30]
Affiliated researcher
PubMed DOI Crossref
Microtubules support a disk-like septin arrangement at the plasma membrane of mammalian cells
Sellin ME, Holmfeldt P, Stenmark S, Gullberg M
MBoC 22 (23) 4588-4601 [2011-12-00; online 2011-12-00]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
High nuclear RBM3 expression is associated with an improved prognosis in colorectal cancer.
Hjelm B, Brennan DJ, Zendehrokh N, ..., Jirström K, Uhlen M
Proteomics Clin Appl 5 (11-12) 624-635 [2011-12-00; online 2011-10-01]
Affiliated researcher
PubMed DOI Crossref
Computational mass spectrometry-based proteomics.
Käll L, Vitek O
PLoS Comput Biol 7 (12) e1002277 [2011-12-00; online 2011-12-01]
Affiliated researcher
PubMed DOI Crossref
Colorimetric nucleic acid testing assay for RNA virus detection based on circle-to-circle amplification of padlock probes.
Ke R, Zorzet A, Göransson J, ..., Mirazimi A, Nilsson M
J. Clin. Microbiol. 49 (12) 4279-4285 [2011-12-00; online 2011-09-28]
Affiliated researcher
PubMed DOI Crossref
Autoregulation of the nonsense-mediated mRNA decay pathway in human cells.
Yepiskoposyan H, Aeschimann F, Nilsson D, Okoniewski M, Mühlemann O
RNA 17 (12) 2108-2118 [2011-12-00; online 2011-10-25]
Affiliated researcher
PubMed DOI Crossref
Adenovirus with hexon Tat-protein transduction domain modification exhibits increased therapeutic effect in experimental neuroblastoma and neuroendocrine tumors.
Yu D, Jin C, Leja J, ..., Eriksson F, Essand M
J. Virol. 85 (24) 13114-13123 [2011-12-00; online 2011-09-28]
Affiliated researcher
PubMed DOI Crossref
A complex genomic rearrangement involving the endothelin 3 locus causes dermal hyperpigmentation in the chicken.
Dorshorst B, Molin AM, Rubin CJ, ..., Ashwell C, Andersson L
PLoS Genet 7 (12) e1002412 [2011-12-00; online 2011-12-22]
Affiliated researcher
PubMed DOI Crossref
Counting absolute numbers of molecules using unique molecular identifiers.
Kivioja T, Vähärautio A, Karlsson K, ..., Linnarsson S, Taipale J
Nat. Methods 9 (1) 72-74 [2011-11-20; online 2011-11-20]
Affiliated researcher
PubMed DOI Crossref
Variance decomposition of protein profiles from antibody arrays using a longitudinal twin model.
Kato BS, Nicholson G, Neiman M, ..., Spector TD, Schwenk JM
Proteome Sci 9 (-) 73 [2011-11-17; online 2011-11-17]
Affiliated researcher
PubMed DOI Crossref
Genome sequencing reveals a phage in Helicobacter pylori.
Lehours P, Vale FF, Bjursell MK, ..., Engstrand L, Andersson AF
MBio 2 (6) - [2011-11-15; online 2011-11-15]
Affiliated researcher
PubMed DOI Crossref
Detection of rolling circle amplified DNA molecules using probe-tagged magnetic nanobeads in a portable AC susceptometer.
de la Torre TZ, Mezger A, Herthnek D, ..., Nilsson M, Strømme M
Biosens Bioelectron 29 (1) 195-199 [2011-11-15; online 2011-08-22]
Affiliated researcher
PubMed DOI Crossref
A lateral flow protein microarray for rapid and sensitive antibody assays.
Gantelius J, Bass T, Sjöberg R, Nilsson P, Andersson-Svahn H
Int J Mol Sci 12 (11) 7748-7759 [2011-11-09; online 2011-11-09]
Affiliated researcher
PubMed DOI Crossref
Archaic human ancestry in East Asia.
Skoglund P, Jakobsson M
Proc. Natl. Acad. Sci. U.S.A. 108 (45) 18301-18306 [2011-11-08; online 2011-10-31]
Affiliated researcher
PubMed DOI Crossref
Total RNA sequencing reveals nascent transcription and widespread co-transcriptional splicing in the human brain.
Ameur A, Zaghlool A, Halvardson J, ..., Cavelier L, Feuk L
Nat. Struct. Mol. Biol. 18 (12) 1435-1440 [2011-11-06; online 2011-11-06]
Affiliated researcher
PubMed DOI Crossref
Plasma profiling reveals human fibulin-1 as candidate marker for renal impairment.
Neiman M, Hedberg JJ, Dönnes PR, ..., Schwenk JM, Nilsson P
J. Proteome Res. 10 (11) 4925-4934 [2011-11-04; online 2011-09-29]
Affiliated researcher
PubMed DOI Crossref
Hypothalamic mitochondrial dysfunction associated with anorexia in the anx/anx mouse.
Lindfors C, Nilsson IA, Garcia-Roves PM, ..., Schalling M, Johansen JE
Proc. Natl. Acad. Sci. U.S.A. 108 (44) 18108-18113 [2011-11-01; online 2011-10-24]
Affiliated researcher
PubMed DOI Crossref
Fluorescence techniques to study lipid dynamics.
Sezgin E, Schwille P
Cold Spring Harbor Perspectives in Biology 3 (11) a009803 [2011-11-01; online 2011-11-01]
Erdinc Sezgin SciLifeLab Fellow
PubMed DOI Crossref
Western blotting via proximity ligation for high performance protein analysis.
Liu Y, Gu J, Hagner-McWhirter Å, ..., Ivansson D, Landegren U
Mol. Cell Proteomics 10 (11) O111.011031 [2011-11-00; online 2011-08-02]
Affiliated researcher
PubMed DOI Crossref
The Human Protein Atlas as a proteomic resource for biomarker discovery.
Pontén F, Schwenk JM, Asplund A, Edqvist PH
J. Intern. Med. 270 (5) 428-446 [2011-11-00; online 2011-08-03]
Affiliated researcher
PubMed DOI Crossref
Oncolytic viruses for the treatment of neuroendocrine tumors.
Essand M, Leja J, Giandomenico V, Oberg KE
Horm. Metab. Res. 43 (12) 877-883 [2011-11-00; online 2011-05-30]
Affiliated researcher
PubMed DOI Crossref
Oncolytic adenovirus modified with somatostatin motifs for selective infection of neuroendocrine tumor cells.
Leja J, Yu D, Nilsson B, ..., Giandomenico V, Essand M
Gene Ther. 18 (11) 1052-1062 [2011-11-00; online 2011-04-14]
Affiliated researcher
PubMed DOI Crossref
Ligand discovery from a dopamine D3 receptor homology model and crystal structure
Carlsson J, Coleman RG, Setola V, ..., Roth BL, Shoichet BK
Nat Chem Biol 7 (11) 769-778 [2011-11-00; online 2011-09-18]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies.
Hjelm B, Forsström B, Igel U, ..., Johansson C, Uhlén M
Protein Sci. 20 (11) 1824-1835 [2011-11-00; online 2011-10-12]
Affiliated researcher
PubMed DOI Crossref
Formulating a new basis for the treatment against botulinum neurotoxin intoxication: 3,4-Diaminopyridine prodrug design and characterization
Zakhari JS, Kinoyama I, Hixon MS, ..., Globisch D, Janda KD
Bioorganic & Medicinal Chemistry 19 (21) 6203-6209 [2011-11-00; online 2011-11-00]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Comprehensive study of mtDNA among Southwest Asian dogs contradicts independent domestication of wolf, but implies dog-wolf hybridization.
Ardalan A, Kluetsch CF, Zhang AB, ..., Ashtiani SR, Savolainen P
Ecol Evol 1 (3) 373-385 [2011-11-00; online 2012-03-07]
Affiliated researcher
PubMed DOI Crossref
Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity.
Rasmussen M, Sundström M, Göransson Kultima H, ..., Glimelius B, Isaksson A
Genome Biol. 12 (10) R108 [2011-10-24; online 2011-10-24]
Affiliated researcher
PubMed DOI Crossref
A method for metagenomics of Helicobacter pylori from archived formalin-fixed gastric biopsies permitting longitudinal studies of carcinogenic risk.
Zheng Z, Andersson AF, Ye W, ..., Normark S, Engstrand L
PLoS ONE 6 (10) e26442 [2011-10-21; online 2011-10-21]
Affiliated researcher
PubMed DOI Crossref
Cancer associated epigenetic transitions identified by genome-wide histone methylation binding profiles in human colorectal cancer samples and paired normal mucosa.
Enroth S, Rada-Iglesisas A, Andersson R, ..., Komorowski J, Wadelius C
BMC Cancer 11 (-) 450 [2011-10-19; online 2011-10-19]
Affiliated researcher
PubMed DOI Crossref
Increased throughput of proteomics analysis by multiplexing high-resolution tandem mass spectra.
Ledvina AR, Savitski MM, Zubarev AR, ..., Coon JJ, Zubarev RA
Anal. Chem. 83 (20) 7651-7656 [2011-10-15; online 2011-09-28]
Affiliated researcher
PubMed DOI Crossref
MED12, the mediator complex subunit 12 gene, is mutated at high frequency in uterine leiomyomas.
Mäkinen N, Mehine M, Tolvanen J, ..., Vahteristo P, Aaltonen LA
Science 334 (6053) 252-255 [2011-10-14; online 2011-08-25]
Affiliated researcher
PubMed DOI Crossref
A high-resolution map of human evolutionary constraint using 29 mammals.
Lindblad-Toh K, Garber M, Zuk O, ..., Lander ES, Kellis M
Nature 478 (7370) 476-482 [2011-10-12; online 2011-10-12]
Affiliated researcher
PubMed DOI Crossref
Adenosine kinase deficiency disrupts the methionine cycle and causes hypermethioninemia, encephalopathy, and abnormal liver function.
Bjursell MK, Blom HJ, Cayuela JA, ..., Lundeberg J, Wedell A
Am. J. Hum. Genet. 89 (4) 507-515 [2011-10-07; online 2011-09-28]
Affiliated researcher
PubMed DOI Crossref
Rapid flow-sorting to simultaneously resolve multiplex massively parallel sequencing products.
Sandberg J, Werne B, Dessing M, Lundeberg J
Sci Rep 1 (-) 108 [2011-10-06; online 2011-10-06]
Affiliated researcher
PubMed DOI Crossref
Systems-Based Analysis of Modified tRNA Bases
Globisch D, Pearson D, Hienzsch A, ..., Sieber SA, Carell T
Angewandte Chemie International Edition 50 (41) 9739-9742 [2011-10-04; online 2011-08-31]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
miR393 and Secondary siRNAs Regulate Expression of the TIR1/AFB2 Auxin Receptor Clade and Auxin-Related Development of Arabidopsis Leaves
Si-Ammour A, Windels D, Arn-Bouldoires E, ..., Meins F, Vazquez F
PLANT PHYSIOLOGY 157 (2) 683-691 [2011-10-01; online 2011-08-09]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea.
Herlemann DP, Labrenz M, Jürgens K, ..., Waniek JJ, Andersson AF
ISME J 5 (10) 1571-1579 [2011-10-00; online 2011-04-07]
Affiliated researcher
PubMed DOI Crossref
Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes
Kutter C, Brown GD, Gonçalves Â, ..., White RJ, Odom DT
Nat Genet 43 (10) 948-955 [2011-10-00; online 2011-08-28]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Song L, Zhang Z, Grasfeder LL, ..., Lieb JD, Furey TS
Genome Res. 21 (10) 1757-1767 [2011-10-00; online 2011-07-12]
Affiliated researcher
PubMed DOI Crossref
Metaxa: a software tool for automated detection and discrimination among ribosomal small subunit (12S/16S/18S) sequences of archaea, bacteria, eukaryotes, mitochondria, and chloroplasts in metagenomes and environmental sequencing datasets.
Bengtsson J, Eriksson KM, Hartmann M, ..., Rosenblad MA, Nilsson RH
Antonie Van Leeuwenhoek 100 (3) 471-475 [2011-10-00; online 2011-06-15]
DDLS Fellow Johan Bengtsson-Palme
PubMed DOI Crossref
Impact of CYP3A5*3 and CYP2C8-HapC on paclitaxel/carboplatin-induced myelosuppression in patients with ovarian cancer.
Gréen H, Khan MS, Jakobsen-Falk I, Åvall-Lundqvist E, Peterson C
J Pharm Sci 100 (10) 4205-4209 [2011-10-00; online 2011-06-23]
Affiliated researcher
PubMed DOI Crossref
Identification of genomic regions associated with phenotypic variation between dog breeds using selection mapping.
Vaysse A, Ratnakumar A, Derrien T, ..., Hitte C, Webster MT
PLoS Genet 7 (10) e1002316 [2011-10-00; online 2011-10-13]
Affiliated researcher
PubMed DOI Crossref
Heme binding in gas-phase holo-myoglobin cations: distal becomes proximal?
Enyenihi AA, Yang H, Ytterberg AJ, Lyutvinskiy Y, Zubarev RA
J. Am. Soc. Mass Spectrom. 22 (10) 1763-1770 [2011-10-00; online 2011-07-19]
Affiliated researcher
PubMed DOI Crossref
Genome-wide association identifies nine common variants associated with fasting proinsulin levels and provides new insights into the pathophysiology of type 2 diabetes.
Strawbridge RJ, Dupuis J, Prokopenko I, ..., Hamsten A, Florez JC
Diabetes 60 (10) 2624-2634 [2011-10-00; online 2011-08-26]
Affiliated researcher
PubMed DOI Crossref
Fibroblast growth factor 10 haploinsufficiency causes chronic obstructive pulmonary disease.
Klar J, Blomstrand P, Brunmark C, ..., Bergendal B, Dahl N
J. Med. Genet. 48 (10) 705-709 [2011-10-00; online 2011-07-08]
Affiliated researcher
PubMed DOI Crossref
Enhanced information output from shotgun proteomics data by protein quantification and peptide quality control (PQPQ).
Forshed J, Johansson HJ, Pernemalm M, ..., Sandberg A, Lehtiö J
Mol. Cell Proteomics 10 (10) M111.010264 [2011-10-00; online 2011-07-06]
Affiliated researcher
PubMed DOI Crossref
Diffraction-unlimited all-optical imaging and writing with a photochromic GFP
Grotjohann T, Testa I, Leutenegger M, ..., Jakobs S, Hell SW
Nature 478 (7368) 204-208 [2011-10-00; online 2011-09-11]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching
Brakemann T, Stiel AC, Weber G, ..., Hell SW, Jakobs S
Nat Biotechnol 29 (10) 942-947 [2011-10-00; online 2011-09-11]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
ProteinSeq: high-performance proteomic analyses by proximity ligation and next generation sequencing.
Darmanis S, Nong RY, Vänelid J, ..., Kamali-Moghaddam M, Landegren U
PLoS ONE 6 (9) e25583 [2011-09-29; online 2011-09-29]
Affiliated researcher
PubMed DOI Crossref
High RBM3 expression in prostate cancer independently predicts a reduced risk of biochemical recurrence and disease progression.
Jonsson L, Gaber A, Ulmert D, ..., Bjartell A, Jirström K
Diagn Pathol 6 (-) 91 [2011-09-28; online 2011-09-28]
Affiliated researcher
PubMed DOI Crossref
Genomic determinants of protein evolution and polymorphism in Arabidopsis.
Slotte T, Bataillon T, Hansen TT, ..., Wright SI, Schierup MH
Genome Biol Evol 3 (-) 1210-1219 [2011-09-16; online 2011-09-16]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
A phylometagenomic exploration of oceanic alphaproteobacteria reveals mitochondrial relatives unrelated to the SAR11 clade.
Brindefalk B, Ettema TJ, Viklund J, Thollesson M, Andersson SG
PLoS ONE 6 (9) e24457 [2011-09-14; online 2011-09-14]
Affiliated researcher
PubMed DOI Crossref
Zebrafish Ext2 is necessary for Fgf and Wnt signaling, but not for Hh signaling.
Fischer S, Filipek-Gorniok B, Ledin J
BMC Dev. Biol. 11 (-) 53 [2011-09-05; online 2011-09-05]
Affiliated researcher
PubMed DOI Crossref
CK2 phosphorylation of XRCC1 facilitates dissociation from DNA and single-strand break formation during base excision repair.
Ström CE, Mortusewicz O, Finch D, ..., Dianov GL, Helleday T
DNA Repair (Amst.) 10 (9) 961-969 [2011-09-05; online 2011-08-15]
Affiliated researcher
PubMed DOI Crossref
Molecular Characteristics of ERCC1-Negative versus ERCC1-Positive Tumors in Resected NSCLC.
Friboulet L, Barrios-Gonzales D, Commo F, ..., André F, Soria JC
Clin. Cancer Res. 17 (17) 5562-5572 [2011-09-01; online 2011-07-12]
Affiliated researcher
PubMed DOI Crossref
Ecdysteroid receptor from the American lobster Homarus americanus: EcR/RXR isoform cloning and ligand-binding properties.
Tarrant AM, Behrendt L, Stegeman JJ, Verslycke T
Gen. Comp. Endocrinol. 173 (2) 346-355 [2011-09-01; online 2011-06-22]
Lars Behrendt SciLifeLab Fellow
DOI Crossref
Understanding and Exploiting Information Spreading and Integrating Technologies
Holme P, Huss M
J. Comput. Sci. Technol. 26 (5) 829-836 [2011-09-00; online 2011-09-23]
Affiliated researcher
PubMed DOI Crossref
Penicillin-binding protein 5 can form a homo-oligomeric complex in the inner membrane of Escherichia coli.
Skoog K, Bruzell FS, Ducroux A, ..., Högbom M, Daley DO
Protein Sci. 20 (9) 1520-1529 [2011-09-00; online 2011-07-13]
Affiliated researcher
PubMed DOI Crossref
Mutations in or near the transmembrane domain alter PMEL amyloid formation from functional to pathogenic.
Watt B, Tenza D, Lemmon MA, ..., Andersson L, Marks MS
PLoS Genet 7 (9) e1002286 [2011-09-00; online 2011-09-15]
Affiliated researcher
PubMed DOI Crossref
Molecular subtypes of osteosarcoma identified by reducing tumor heterogeneity through an interspecies comparative approach.
Scott MC, Sarver AL, Gavin KJ, ..., Breen M, Modiano JF
Bone 49 (3) 356-367 [2011-09-00; online 2011-05-15]
Affiliated researcher
PubMed DOI Crossref
Letter to the editor: SeqXML and OrthoXML: standards for sequence and orthology information.
Schmitt T, Messina DN, Schreiber F, Sonnhammer EL
Brief. Bioinformatics 12 (5) 485-488 [2011-09-00; online 2011-06-11]
Affiliated researcher
PubMed DOI Crossref
Inactivation of Pmel alters melanosome shape but has only a subtle effect on visible pigmentation.
Hellström AR, Watt B, Fard SS, ..., Marks MS, Andersson L
PLoS Genet 7 (9) e1002285 [2011-09-00; online 2011-09-15]
Affiliated researcher
PubMed DOI Crossref
Deciphering the rules governing assembly order of mammalian septin complexes
Sellin ME, Sandblad L, Stenmark S, Gullberg M
MBoC 22 (17) 3152-3164 [2011-09-00; online 2011-09-00]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
The genome of the green anole lizard and a comparative analysis with birds and mammals.
Alföldi J, Di Palma F, Grabherr M, ..., Ponting CP, Lindblad-Toh K
Nature 477 (7366) 587-591 [2011-08-31; online 2011-08-31]
Affiliated researcher
PubMed DOI Crossref
The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape
Smith DR, Burki F, Yamada T, ..., Van Etten JL, Keeling PJ
PLoS ONE 6 (8) e23624 [2011-08-26; online 2011-08-26]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Short-time repeat high-risk HPV testing by self-sampling for screening of cervical cancer.
Gyllensten U, Sanner K, Gustavsson I, ..., Wikström I, Wilander E
Br. J. Cancer 105 (5) 694-697 [2011-08-23; online 2011-08-02]
Affiliated researcher
PubMed DOI Crossref
Overexpression of podocalyxin-like protein is an independent factor of poor prognosis in colorectal cancer.
Larsson A, Johansson ME, Wangefjord S, ..., Uhlén M, Jirström K
Br. J. Cancer 105 (5) 666-672 [2011-08-23; online 2011-08-09]
Affiliated researcher
PubMed DOI Crossref
Three periods of regulatory innovation during vertebrate evolution.
Lowe CB, Kellis M, Siepel A, ..., Lindblad-Toh K, Haussler D
Science 333 (6045) 1019-1024 [2011-08-19; online 2011-08-20]
Affiliated researcher
PubMed DOI Crossref
Titration-free 454 sequencing using Y adapters.
Zheng Z, Advani A, Melefors Ö, ..., Engstrand L, Andersson AF
Nat Protoc 6 (9) 1367-1376 [2011-08-18; online 2011-08-18]
Affiliated researcher
PubMed DOI Crossref
TGFβ-induced early activation of the small GTPase RhoA is Smad2/3-independent and involves Src and the guanine nucleotide exchange factor Vav2.
Papadimitriou E, Kardassis D, Moustakas A, Stournaras C
Cell. Physiol. Biochem. 28 (2) 229-238 [2011-08-16; online 2011-08-16]
Affiliated researcher
PubMed DOI Crossref
Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
International Multiple Sclerosis Genetics Consortium , Wellcome Trust Case Control Consortium 2 , Sawcer S, ..., Donnelly P, Compston A
Nature 476 (7359) 214-219 [2011-08-10; online 2011-08-10]
Affiliated researcher
PubMed DOI Crossref
Delay-induced anomalous fluctuations in intracellular regulation.
Grönlund A, Lötstedt P, Elf J
Nat Commun 2 (-) 419 [2011-08-09; online 2011-08-09]
Affiliated researcher
PubMed DOI Crossref
Mapping the subcellular protein distribution in three human cell lines.
Fagerberg L, Stadler C, Skogs M, ..., Uhlén M, Lundberg E
J. Proteome Res. 10 (8) 3766-3777 [2011-08-05; online 2011-06-29]
Affiliated researcher
PubMed DOI Crossref
Domain architecture conservation in orthologs.
Forslund K, Pekkari I, Sonnhammer EL
BMC Bioinformatics 12 (-) 326 [2011-08-05; online 2011-08-05]
Affiliated researcher
PubMed DOI Crossref
Single-molecule investigations of the stringent response machinery in living bacterial cells.
English BP, Hauryliuk V, Sanamrad A, ..., Dekker NH, Elf J
Proc. Natl. Acad. Sci. U.S.A. 108 (31) E365-E373 [2011-08-02; online 2011-07-05]
Affiliated researcher
PubMed DOI Crossref
Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum.
Öjemalm K, Higuchi T, Jiang Y, ..., Suga H, von Heijne G
Proc. Natl. Acad. Sci. U.S.A. 108 (31) E359-E364 [2011-08-02; online 2011-05-23]
Affiliated researcher
PubMed DOI Crossref
Influence of the COMT genotype on working memory and brain activity changes during development.
Dumontheil I, Roggeman C, Ziermans T, ..., Kere J, Klingberg T
Biol. Psychiatry 70 (3) 222-229 [2011-08-01; online 2011-04-22]
Affiliated researcher
PubMed DOI Crossref
Transition of microbial communities during the adaption to anaerobic digestion of carrot waste.
Garcia SL, Jangid K, Whitman WB, Das KC
Bioresour Technol 102 (15) 7249-7256 [2011-08-00; online 2011-05-06]
Sarahi Garcia SciLifeLab Fellow
PubMed DOI Crossref
The underlying mechanism for the PARP and BRCA synthetic lethality: clearing up the misunderstandings.
Helleday T
Mol Oncol 5 (4) 387-393 [2011-08-00; online 2011-07-22]
Affiliated researcher
PubMed DOI Crossref
The short non-coding transcriptome of the protozoan parasite Trypanosoma cruzi.
Franzén O, Arner E, Ferella M, ..., Andersson B, Daub CO
PLoS Negl Trop Dis 5 (8) e1283 [2011-08-00; online 2011-08-30]
Affiliated researcher
PubMed DOI Crossref
Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment
Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R
Structure 19 (8) 1108-1126 [2011-08-00; online 2011-08-00]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
LUPA: a European initiative taking advantage of the canine genome architecture for unravelling complex disorders in both human and dogs.
Lequarré AS, Andersson L, André C, ..., Lindblad-Toh K, Georges M
Vet. J. 189 (2) 155-159 [2011-08-00; online 2011-07-12]
Affiliated researcher
PubMed DOI Crossref
Effects of peptide backbone amide-to-ester bond substitution on the cleavage frequency in electron capture dissociation and collision-activated dissociation.
Kjeldsen F, Zubarev RA
J. Am. Soc. Mass Spectrom. 22 (8) 1441-1452 [2011-08-00; online 2011-05-05]
Affiliated researcher
PubMed DOI Crossref
Distribution of adoptively transferred porcine T-lymphoblasts tracked by (18)F-2-fluoro-2-deoxy-D-glucose and position emission tomography.
Eriksson O, Sadeghi A, Carlsson B, ..., Korsgren O, Sundin A
Nucl. Med. Biol. 38 (6) 827-833 [2011-08-00; online 2011-04-21]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight.
Ka S, Albert FW, Denbow DM, ..., Andersson L, Hallböök F
Neurogenetics 12 (3) 211-221 [2011-08-00; online 2011-07-12]
Affiliated researcher
PubMed DOI Crossref
Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems.
St Onge KR, Källman T, Slotte T, Lascoux M, Palmé AE
Mol. Ecol. 20 (16) 3306-3320 [2011-08-00; online 2011-07-21]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
A screening method for phosphohistidine phosphatase 1 activity.
Beckman-Sundh U, Ek B, Zetterqvist O, Ek P
Ups. J. Med. Sci. 116 (3) 161-168 [2011-08-00; online 2011-06-17]
Affiliated researcher
PubMed DOI Crossref
A genomic view of mRNA turnover in yeast
Pérez-Ortín JE, Jordán-Pla A, Pelechano V
Comptes Rendus Biologies 334 (8-9) 647-654 [2011-08-00; online 2011-08-00]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Increased recruitment but impaired function of leukocytes during inflammation in mouse models of type 1 and type 2 diabetes.
Pettersson US, Christoffersson G, Massena S, ..., Henriksnäs J, Phillipson M
PLoS ONE 6 (7) e22480 [2011-07-25; online 2011-07-25]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Low RBM3 protein expression correlates with tumour progression and poor prognosis in malignant melanoma: an analysis of 215 cases from the Malmö Diet and Cancer Study.
Jonsson L, Bergman J, Nodin B, ..., Uhlén M, Jirström K
J Transl Med 9 (-) 114 [2011-07-21; online 2011-07-21]
Affiliated researcher
PubMed DOI Crossref
FAAST: Flow-space Assisted Alignment Search Tool.
Lysholm F, Andersson B, Persson B
BMC Bioinformatics 12 (-) 293 [2011-07-19; online 2011-07-19]
Affiliated researcher
PubMed DOI Crossref
Alzheimer's disease and mild cognitive impairment are associated with elevated levels of isoaspartyl residues in blood plasma proteins.
Yang H, Lyutvinskiy Y, Soininen H, Zubarev RA
J. Alzheimers Dis. 27 (1) 113-118 [2011-07-19; online 2011-07-19]
Affiliated researcher
PubMed DOI Crossref
Flanking residues help determine whether a hydrophobic segment adopts a monotopic or bitopic topology in the endoplasmic reticulum membrane.
Nørholm MH, Shulga YV, Aoki S, Epand RM, von Heijne G
J. Biol. Chem. 286 (28) 25284-25290 [2011-07-15; online 2011-05-23]
Affiliated researcher
PubMed DOI Crossref
5-Hydroxymethylcytosine, the Sixth Base of the Genome
Münzel M, Globisch D, Carell T
Angewandte Chemie International Edition 50 (29) 6460-6468 [2011-07-11; online 2011-06-17]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Exocyst complex component 3-like 2 (EXOC3L2) associates with the exocyst complex and mediates directional migration of endothelial cells.
Barkefors I, Fuchs PF, Heldin J, ..., Forsberg-Nilsson K, Kreuger J
J. Biol. Chem. 286 (27) 24189-24199 [2011-07-08; online 2011-05-12]
Affiliated researcher
PubMed DOI Crossref
Scalable transcriptome preparation for massive parallel sequencing.
Stranneheim H, Werne B, Sherwood E, Lundeberg J
PLoS ONE 6 (7) e21910 [2011-07-07; online 2011-07-07]
Affiliated researcher
PubMed DOI Crossref
Thrombospondin-1: an islet endothelial cell signal of importance for β-cell function.
Olerud J, Mokhtari D, Johansson M, ..., Welsh N, Carlsson PO
Diabetes 60 (7) 1946-1954 [2011-07-00; online 2011-05-26]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Sequence scrambling in shotgun proteomics is negligible.
Goloborodko AA, Gorshkov MV, Good DM, Zubarev RA
J. Am. Soc. Mass Spectrom. 22 (7) 1121-1124 [2011-07-00; online 2011-04-15]
Affiliated researcher
PubMed DOI Crossref
Refining tumor-associated aneuploidy through 'genomic recoding' of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas.
Thomas R, Seiser EL, Motsinger-Reif A, ..., Modiano JF, Breen M
Leuk. Lymphoma 52 (7) 1321-1335 [2011-07-00; online 2011-03-07]
Affiliated researcher
PubMed DOI Crossref
Molecular genetics and molecular biology of dyslexia.
Kere J
Wiley Interdiscip Rev Cogn Sci 2 (4) 441-448 [2011-07-00; online 2011-02-03]
Affiliated researcher
PubMed DOI Crossref
Modularity of the Bacterial Cell Cycle Enables Independent Spatial and Temporal Control of DNA Replication
Jonas K, Chen YE, Laub MT
Current Biology 21 (13) 1092-1101 [2011-07-00; online 2011-07-00]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
LGI2 truncation causes a remitting focal epilepsy in dogs.
Seppälä EH, Jokinen TS, Fukata M, ..., Minassian BA, Lohi H
PLoS Genet 7 (7) e1002194 [2011-07-00; online 2011-07-28]
Affiliated researcher
PubMed DOI Crossref
Isolated oligodontia associated with mutations in EDARADD, AXIN2, MSX1, and PAX9 genes.
Bergendal B, Klar J, Stecksén-Blicks C, Norderyd J, Dahl N
Am. J. Med. Genet. A 155A (7) 1616-1622 [2011-07-00; online 2011-05-27]
Affiliated researcher
PubMed DOI Crossref
Functional consequences of bidirectional promoters
Wei W, Pelechano V, Järvelin AI, Steinmetz LM
Trends in Genetics 27 (7) 267-276 [2011-07-00; online 2011-07-00]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
CoMet--a web server for comparative functional profiling of metagenomes.
Lingner T, Asshauer KP, Schreiber F, Meinicke P
Nucleic Acids Res. 39 (Web Server issue) W518-W523 [2011-07-00; online 2011-05-26]
Affiliated researcher
PubMed DOI Crossref
Both CD4+ FoxP3+ and CD4+ FoxP3- T cells from patients with B-cell malignancy express cytolytic markers and kill autologous leukaemic B cells in vitro.
Lindqvist CA, Christiansson LH, Thörn I, ..., Olsson-Strömberg U, Loskog AS
Immunology 133 (3) 296-306 [2011-07-00; online 2011-04-05]
Affiliated researcher
PubMed DOI Crossref
Automated classification of multicolored rolling circle products in dual-channel wide-field fluorescence microscopy.
Gavrilovic M, Weibrecht I, Conze T, Söderberg O, Wählby C
Cytometry A 79 (7) 518-527 [2011-07-00; online 2011-06-10]
Affiliated researcher
PubMed DOI Crossref
Genome wide association study identifies KCNMA1 contributing to human obesity.
Jiao H, Arner P, Hoffstedt J, ..., Clement K, Dahlman I
BMC Med Genomics 4 (-) 51 [2011-06-28; online 2011-06-28]
Affiliated researcher
PubMed DOI Crossref
The asthma candidate gene NPSR1 mediates isoform specific downstream signalling.
Pietras CO, Vendelin J, Anedda F, ..., Söderhäll C, Kere J
BMC Pulm Med 11 (-) 39 [2011-06-27; online 2011-06-27]
Affiliated researcher
PubMed DOI Crossref
A frameshift mutation in golden retriever dogs with progressive retinal atrophy endorses SLC4A3 as a candidate gene for human retinal degenerations.
Downs LM, Wallin-Håkansson B, Boursnell M, ..., Bergström T, Mellersh CS
PLoS ONE 6 (6) e21452 [2011-06-27; online 2011-06-27]
Affiliated researcher
PubMed DOI Crossref
Genetic variation near IRS1 associates with reduced adiposity and an impaired metabolic profile.
Kilpeläinen TO, Zillikens MC, Stančákova A, ..., Laakso M, Loos RJ
Nat. Genet. 43 (8) 753-760 [2011-06-26; online 2011-06-26]
Affiliated researcher
PubMed DOI Crossref
Translational database selection and multiplexed sequence capture for up front filtering of reliable breast cancer biomarker candidates.
Ståhl PL, Bjursell MK, Mahdessian H, ..., Jirström K, Lundeberg J
PLoS ONE 6 (6) e20794 [2011-06-15; online 2011-06-15]
Affiliated researcher
PubMed DOI Crossref
Mutations in Frizzled 6 cause isolated autosomal-recessive nail dysplasia.
Fröjmark AS, Schuster J, Sobol M, ..., Klar J, Dahl N
Am. J. Hum. Genet. 88 (6) 852-860 [2011-06-10; online 2011-06-15]
Affiliated researcher
PubMed DOI Crossref
Identification of chromatophore membrane protein complexes formed under different nitrogen availability conditions in Rhodospirillum rubrum.
Selao TT, Branca R, Chae PS, ..., Nordlund S, Norén A
J. Proteome Res. 10 (6) 2703-2714 [2011-06-03; online 2011-04-26]
Affiliated researcher
PubMed DOI Crossref
Nanosilver on nanostructured silica: Antibacterial activity and Ag surface area.
Sotiriou GA, Teleki A, Camenzind A, ..., Panke S, Pratsinis SE
Chem Eng J 170 (2-3) 547-554 [2011-06-01; online 2011-06-01]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Nucleus- and nucleomorph-targeted histone proteins in a chlorarachniophyte alga
Hirakawa Y, Burki F, Keeling PJ
Molecular Microbiology 80 (6) 1439-1449 [2011-06-00; online 2011-04-06]
Fabien Burki SciLifeLab Fellow
PubMed DOI Crossref
Membrane proteins: from bench to bits.
von Heijne G
Biochem. Soc. Trans. 39 (3) 747-750 [2011-06-00; online 2011-05-24]
Affiliated researcher
PubMed DOI Crossref
Genetic association and gene expression analysis identify FGFR1 as a new susceptibility gene for human obesity.
Jiao H, Arner P, Dickson SL, ..., Clement K, Dahlman I
J. Clin. Endocrinol. Metab. 96 (6) E962-E966 [2011-06-00; online 2011-03-23]
Affiliated researcher
PubMed DOI Crossref
Endolithic chlorophyll d-containing phototrophs.
Behrendt L, Larkum AW, Norman A, ..., Trampe E, Kühl M
ISME J 5 (6) 1072-1076 [2011-06-00; online 2010-12-16]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
Association of the HLA-G gene +3142C>G polymorphism with systemic lupus erythematosus.
Consiglio CR, Veit TD, Monticielo OA, ..., Brenol JC, Chies JA
Tissue Antigens 77 (6) 540-545 [2011-06-00; online 2011-03-14]
Camila Consiglio DDLS Fellow
PubMed DOI Crossref
Detailed analysis of variants in FTO in association with body composition in a cohort of 70-year-olds suggests a weakened effect among elderly.
Jacobsson JA, Almén MS, Benedict C, ..., Lind L, Schiöth HB
PLoS ONE 6 (5) e20158 [2011-05-27; online 2011-05-27]
Affiliated researcher
PubMed DOI Crossref
Simultaneous visualization of both signaling cascade activity and end-point gene expression in single cells.
Weibrecht I, Grundberg I, Nilsson M, Söderberg O
PLoS ONE 6 (5) e20148 [2011-05-25; online 2011-05-25]
Affiliated researcher
PubMed DOI Crossref
The zebrafish transcriptome during early development.
Vesterlund L, Jiao H, Unneberg P, Hovatta O, Kere J
BMC Dev. Biol. 11 (-) 30 [2011-05-24; online 2011-05-24]
Affiliated researcher
PubMed DOI Crossref
Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics.
Zi Z, Feng Z, Chapnick DA, ..., Moustakas A, Liu X
Mol Syst Biol 7 (-) 492 [2011-05-24; online 2011-05-27]
Affiliated researcher
PubMed DOI Crossref
Multiple recognition assay reveals prostasomes as promising plasma biomarkers for prostate cancer.
Tavoosidana G, Ronquist G, Darmanis S, ..., Landegren UD, Kamali-Moghaddam M
Proc. Natl. Acad. Sci. U.S.A. 108 (21) 8809-8814 [2011-05-24; online 2011-05-09]
Affiliated researcher
PubMed DOI Crossref
Rapid screening of complex DNA samples by single-molecule amplification and sequencing.
Huang J, Zheng Z, Andersson AF, Engstrand L, Ye W
PLoS ONE 6 (5) e19723 [2011-05-19; online 2011-05-19]
Affiliated researcher
PubMed DOI Crossref
The Trypanosoma cruzi genome; conserved core genes and extremely variable surface molecule families.
Andersson B
Res. Microbiol. 162 (6) 619-625 [2011-05-18; online 2011-05-18]
Affiliated researcher
PubMed DOI Crossref
Full-length transcriptome assembly from RNA-Seq data without a reference genome.
Grabherr MG, Haas BJ, Yassour M, ..., Friedman N, Regev A
Nat. Biotechnol. 29 (7) 644-652 [2011-05-15; online 2011-05-15]
Affiliated researcher
PubMed DOI Crossref
Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants.
Pinto D, Darvishi K, Shi X, ..., Scherer SW, Feuk L
Nat. Biotechnol. 29 (6) 512-520 [2011-05-08; online 2011-05-08]
Affiliated researcher
PubMed DOI Crossref
Phosphoproteomic profiling of NSCLC cells reveals that ephrin B3 regulates pro-survival signaling through Akt1-mediated phosphorylation of the EphA2 receptor.
Ståhl S, Branca RM, Efazat G, ..., Viktorsson K, Lehtiö J
J. Proteome Res. 10 (5) 2566-2578 [2011-05-06; online 2011-04-11]
Affiliated researcher
PubMed DOI Crossref
Atmospheric reaction systems as null-models to identify structural traces of evolution in metabolism.
Holme P, Huss M, Lee SH
PLoS ONE 6 (5) e19759 [2011-05-06; online 2011-05-06]
Affiliated researcher
PubMed DOI Crossref
Characterization of NPY Y2 receptor protein expression in the mouse brain. II. Coexistence with NPY, the Y1 receptor, and other neurotransmitter-related molecules.
Stanić D, Mulder J, Watanabe M, Hökfelt T
J. Comp. Neurol. 519 (7) 1219-1257 [2011-05-01; online 2011-04-01]
Affiliated researcher
PubMed DOI Crossref
Design of a peptide-based vector, PepFect6, for efficient delivery of siRNA in cell culture and systemically in vivo.
Andaloussi SE, Lehto T, Mäger I, ..., Smith CI, Langel U
Nucleic Acids Res. 39 (9) 3972-3987 [2011-05-00; online 2011-01-17]
Affiliated researcher
PubMed DOI Crossref
Assessment of receptor occupancy-over-time of two dopamine transporter inhibitors by [(11)C]CIT and target controlled infusion.
Eriksson O, Långström B, Josephsson R
Ups. J. Med. Sci. 116 (2) 100-106 [2011-05-00; online 2011-03-28]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
Nitrogenase gene amplicons from global marine surface waters are dominated by genes of non-cyanobacteria.
Farnelid H, Andersson AF, Bertilsson S, ..., Hagström Å, Riemann L
PLoS ONE 6 (4) e19223 [2011-04-29; online 2011-04-29]
Affiliated researcher
PubMed DOI Crossref
Large scale library generation for high throughput sequencing.
Borgström E, Lundin S, Lundeberg J
PLoS ONE 6 (4) e19119 [2011-04-27; online 2011-04-27]
Affiliated researcher
PubMed DOI Crossref
Charged flanking residues control the efficiency of membrane insertion of the first transmembrane segment in yeast mitochondrial Mgm1p.
Osterberg M, Calado Botelho S, von Heijne G, Kim H
FEBS Lett. 585 (8) 1238-1242 [2011-04-20; online 2011-03-30]
Affiliated researcher
PubMed DOI Crossref
Discovery and Synthesis of New UV-Induced Intrastrand C(4−8)G and G(8−4)C Photolesions
Münzel M, Szeibert C, Glas AF, Globisch D, Carell T
J. Am. Chem. Soc. 133 (14) 5186-5189 [2011-04-13; online 2011-04-13]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Intermediate states of the Kv1.2 voltage sensor from atomistic molecular dynamics simulations
Delemotte L, Tarek M, Klein ML, Amaral C, Treptow W
Proceedings of the National Academy of Sciences 108 (15) 6109-6114 [2011-04-12; online 2011-03-28]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
Hybrid, silica-coated, Janus-like plasmonic-magnetic nanoparticles.
Sotiriou GA, Hirt AM, Lozach PY, ..., Krumeich F, Pratsinis SE
Chem Mater 23 (7) 1985-1992 [2011-04-12; online 2011-04-12]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Genomic-wide methods to evaluate transcription rates in yeast.
García-Martínez J, Pelechano V, Pérez-Ortín JE
Methods in molecular biology (Clifton, N.J.) 734 (-) 25-44 [2011-04-07; online 2011-04-07]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Systematic analysis of native membrane protein complexes in Escherichia coli.
Maddalo G, Stenberg-Bruzell F, Götzke H, ..., Ilag LL, Daley DO
J. Proteome Res. 10 (4) 1848-1859 [2011-04-01; online 2011-02-18]
Affiliated researcher
PubMed DOI Crossref
Untangling the phenotypic heterogeneity of Diamond Blackfan anemia.
Farrar JE, Dahl N
Semin. Hematol. 48 (2) 124-135 [2011-04-00; online 2011-03-26]
Affiliated researcher
PubMed DOI Crossref
MAOA genotype, family relations and sexual abuse in relation to adolescent alcohol consumption.
Nilsson KW, Comasco E, Åslund C, ..., Leppert J, Oreland L
Addict Biol 16 (2) 347-355 [2011-04-00; online 2010-08-23]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Parameters of the Protein Energy Landscapes of Several Light-Harvesting Complexes Probed via Spectral Hole Growth Kinetics Measurements
Herascu N, Najafi M, Amunts A, ..., Seibert M, Zazubovich V
J. Phys. Chem. B 115 (12) 2737-2747 [2011-03-31; online 2011-03-31]
Alexey Amunts SciLifeLab Fellow
PubMed
The insulin receptor substrate-4 (IRS-4) gene and schizophrenia: no evidence for a main genetic factor, however one report of a single schizophrenia patient with a mutation.
Melkersson K, Persson B, Hongslo T
Neuro Endocrinol. Lett. 32 (1) 52-58 [2011-03-17; online 2011-03-17]
Affiliated researcher
PubMed DOI Crossref
TIM23-mediated insertion of transmembrane α-helices into the mitochondrial inner membrane.
Botelho SC, Osterberg M, Reichert AS, ..., von Heijne G, Kim H
EMBO J. 30 (6) 1003-1011 [2011-03-16; online 2011-02-15]
Affiliated researcher
PubMed DOI Crossref
5'UTR variants of ribosomal protein S19 transcript determine translational efficiency: implications for Diamond-Blackfan anemia and tissue variability.
Badhai J, Schuster J, Gidlöf O, Dahl N
PLoS ONE 6 (3) e17672 [2011-03-11; online 2011-03-11]
Affiliated researcher
PubMed DOI Crossref
Decoding a substantial set of samples in parallel by massive sequencing.
Neiman M, Lundin S, Savolainen P, Ahmadian A
PLoS ONE 6 (3) e17785 [2011-03-09; online 2011-03-09]
Affiliated researcher
PubMed DOI Crossref
Shotgun sequencing analysis of Trypanosoma cruzi I Sylvio X10/1 and comparison with T. cruzi VI CL Brener.
Franzén O, Ochaya S, Sherwood E, ..., Miles MA, Andersson B
PLoS Negl Trop Dis 5 (3) e984 [2011-03-08; online 2011-03-08]
Affiliated researcher
PubMed DOI Crossref
Cancer. New epigenetic drivers of cancers.
Elsässer SJ, Allis CD, Lewis PW
Science (New York, N.Y.) 331 (6021) 1145-1146 [2011-03-04; online 2011-03-10]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Intramuscular islet transplantation promotes restored islet vascularity.
Christoffersson G, Carlsson PO, Phillipson M
Islets 3 (2) 69-71 [2011-03-01; online 2011-03-01]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Ultra-deep sequencing of mouse mitochondrial DNA: mutational patterns and their origins.
Ameur A, Stewart JB, Freyer C, ..., Larsson NG, Gyllensten U
PLoS Genet 7 (3) e1002028 [2011-03-00; online 2011-03-24]
Affiliated researcher
PubMed DOI Crossref
Systematic antibody and antigen-based proteomic profiling with microarrays.
Ayoglu B, Häggmark A, Neiman M, ..., Schwenk JM, Nilsson P
Expert Rev. Mol. Diagn. 11 (2) 219-234 [2011-03-00; online 2011-03-17]
Affiliated researcher
PubMed DOI Crossref
Maltreatment, MAOA, and delinquency: sex differences in gene-environment interaction in a large population-based cohort of adolescents.
Aslund C, Nordquist N, Comasco E, ..., Oreland L, Nilsson KW
Behav. Genet. 41 (2) 262-272 [2011-03-00; online 2010-08-24]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Flux coupling and transcriptional regulation within the metabolic network of the photosynthetic bacterium Synechocystis sp. PCC6803
Montagud A, Zelezniak A, Navarro E, ..., Urchueguía JF, Patil KR
Biotechnology Journal 6 (3) 330-342 [2011-03-00; online 2011-01-11]
Aleksej Zelezniak SciLifeLab Fellow
PubMed DOI Crossref
CUBN is a gene locus for albuminuria.
Böger CA, Chen MH, Tin A, ..., Fox CS, Kao WH
J. Am. Soc. Nephrol. 22 (3) 555-570 [2011-03-00; online 2011-03-01]
Affiliated researcher
PubMed DOI Crossref
A novel unstable duplication upstream of HAS2 predisposes to a breed-defining skin phenotype and a periodic fever syndrome in Chinese Shar-Pei dogs.
Olsson M, Meadows JR, Truvé K, ..., Tintle L, Lindblad-Toh K
PLoS Genet 7 (3) e1001332 [2011-03-00; online 2011-03-17]
Affiliated researcher
PubMed DOI Crossref
TGFbeta activates mitogen- and stress-activated protein kinase-1 (MSK1) to attenuate cell death.
van der Heide LP, van Dinther M, Moustakas A, ten Dijke P
J. Biol. Chem. 286 (7) 5003-5011 [2011-02-18; online 2010-11-24]
Affiliated researcher
PubMed DOI Crossref
The HDAC inhibitor FK228 enhances adenoviral transgene expression by a transduction-independent mechanism but does not increase adenovirus replication.
Danielsson A, Dzojic H, Rashkova V, Cheng WS, Essand M
PLoS ONE 6 (2) e14700 [2011-02-17; online 2011-02-17]
Affiliated researcher
PubMed DOI Crossref
The RACK1 Signaling Scaffold Protein Selectively Interacts with Yersinia pseudotuberculosis Virulence Function
Thorslund SE, Edgren T, Pettersson J, ..., Wolf-Watz H, Fällman M
PLoS ONE 6 (2) e16784 [2011-02-10; online 2011-02-10]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Improved predictions by Pcons.net using multiple templates.
Larsson P, Skwark MJ, Wallner B, Elofsson A
Bioinformatics 27 (3) 426-427 [2011-02-01; online 2010-12-11]
Affiliated researcher
DOI Crossref
Theoretical modelling of physiologically stretched vessel in magnetisable stent assisted magnetic drug targeting application
Mardinoglu A, Cregg PJ, Murphy K, Curtin M, Prina-Mello A
Journal of Magnetism and Magnetic Materials 323 (3-4) 324-329 [2011-02-00; online 2011-02-00]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Sun-induced nonsynonymous p53 mutations are extensively accumulated and tolerated in normal appearing human skin.
Ståhl PL, Stranneheim H, Asplund A, ..., Pontén F, Lundeberg J
J. Invest. Dermatol. 131 (2) 504-508 [2011-02-00; online 2010-10-14]
Affiliated researcher
PubMed DOI Crossref
Studying transcriptional interactions in single cells at sufficient resolution.
Wallden M, Elf J
Curr. Opin. Biotechnol. 22 (1) 81-86 [2011-02-00; online 2010-11-10]
Affiliated researcher
PubMed DOI Crossref
Postpartum depression symptoms: a case-control study on monoaminergic functional polymorphisms and environmental stressors.
Comasco E, Sylvén SM, Papadopoulos FC, ..., Oreland L, Skalkidou A
Psychiatr Genet 21 (1) 19-28 [2011-02-00; online 2010-11-26]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Genomic duplications mediate overexpression of lamin B1 in adult-onset autosomal dominant leukodystrophy (ADLD) with autonomic symptoms.
Schuster J, Sundblom J, Thuresson AC, ..., Melberg A, Dahl N
Neurogenetics 12 (1) 65-72 [2011-02-00; online 2011-01-12]
Affiliated researcher
PubMed DOI Crossref
Advancing our understanding of functional genome organisation through studies in the fission yeast.
Olsson I, Bjerling P
Curr. Genet. 57 (1) 1-12 [2011-02-00; online 2010-11-27]
Affiliated researcher
PubMed DOI Crossref
Spatial distribution of Na+-K+-ATPase in dendritic spines dissected by nanoscale superresolution STED microscopy.
Blom H, Rönnlund D, Scott L, ..., Aperia A, Brismar H
BMC Neurosci 12 (-) 16 [2011-01-27; online 2011-01-27]
Affiliated researcher
PubMed DOI Crossref
miR-182-mediated downregulation of BRCA1 impacts DNA repair and sensitivity to PARP inhibitors.
Moskwa P, Buffa FM, Pan Y, ..., Helleday T, Chowdhury D
Mol. Cell 41 (2) 210-220 [2011-01-21; online 2010-12-30]
Affiliated researcher
PubMed DOI Crossref
Spatial gradient of protein phosphorylation underlies replicative asymmetry in a bacterium
Chen YE, Tropini C, Jonas K, ..., Huang KC, Laub MT
Proceedings of the National Academy of Sciences 108 (3) 1052-1057 [2011-01-18; online 2010-12-29]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
An unbiased metagenomic search for infectious agents using monozygotic twins discordant for chronic fatigue.
Sullivan PF, Allander T, Lysholm F, ..., Pedersen NL, Andersson B
BMC Microbiol. 11 (-) 2 [2011-01-02; online 2011-01-02]
Affiliated researcher
PubMed DOI Crossref
Reduced Efficacy of Natural Selection on Codon Usage Bias in Selfing Arabidopsis and Capsella Species
Qiu S, Zeng K, Slotte T, Wright S, Charlesworth D
Genome Biol Evol 3 (-) 868-880 [2011-01-01; online 2011-08-18]
SciLifeLab Fellow Tanja Slotte
DOI Crossref
Structural dependence of the efficiency of functionalization of silica-coated FeOx magnetic nanoparticles studied by ATR-IR
Vargas A, Shnitko I, Teleki A, ..., Pratsinis SE, Baiker A
Applied Surface Science 257 (7) 2861-2869 [2011-01-00; online 2011-01-00]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
SNP variations in the 7q33 region containing DGKI are associated with dyslexia in the Finnish and German populations.
Matsson H, Tammimies K, Zucchelli M, ..., Kere J, Peyrard-Janvid M
Behav. Genet. 41 (1) 134-140 [2011-01-00; online 2011-01-04]
Affiliated researcher
DOI Crossref
Morphology, structure and magnetic properties of cobalt–nickel films obtained from acidic electrolytes containing glycine
Ergeneman O, Sivaraman KM, Pané S, ..., Baró MD, Nelson BJ
Electrochimica Acta 56 (3) 1399-1408 [2011-01-00; online 2011-01-00]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Contributions of the EMERALD project to assessing and improving microarray data quality.
Beisvåg V, Kauffmann A, Malone J, ..., Sandvik AK, Kuiper M
BioTechniques 50 (1) 27-31 [2011-01-00; online 2011-01-15]
Affiliated researcher
PubMed DOI Crossref
Anti-apoptotic Bcl-2 fails to form efficient complexes with pro-apoptotic Bak to protect from Celecoxib-induced apoptosis
Rudner J, Elsaesser SJ, Jendrossek V, Huber SM
Biochemical Pharmacology 81 (1) 32-42 [2011-01-00; online 2011-01-00]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
LC-MS based quantification of 2′-ribosylated nucleosides Ar(p) and Gr(p) in tRNA
Pearson D, Hienzsch A, Wagner M, ..., Özden D, Carell T
Chem. Commun. 47 (18) 5196 [2011-00-00; online 2011-00-00]
Daniel Globisch SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1