Publications 2010

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72 publications

PubMed DOI Crossref
Paraneoplastic antigen Ma2 autoantibodies as specific blood biomarkers for detection of early recurrence of small intestine neuroendocrine tumors.
Cui T, Hurtig M, Elgue G, ..., Öberg K, Giandomenico V
PLoS ONE 5 (12) e16010 [2010-12-30; online 2010-12-30]
PubMed DOI Crossref
Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates
Globisch D, Münzel M, Müller M, ..., Biel M, Carell T
PLoS ONE 5 (12) e15367 [2010-12-23; online 2010-12-23]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Non-toxic dry-coated nanosilver for plasmonic biosensors.
Sotiriou GA, Sannomiya T, Teleki A, ..., Vörös J, Pratsinis SE
Adv. Funct. Mater. 20 (24) 4250-4257 [2010-12-21; online 2010-12-21]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Defining the transcriptome and proteome in three functionally different human cell lines.
Lundberg E, Fagerberg L, Klevebring D, ..., Mann M, Uhlen M
Mol Syst Biol 6 (-) 450 [2010-12-21; online 2010-12-24]
PubMed DOI Crossref
Efficient Synthesis of 5-Hydroxymethylcytosine Containing DNA
Münzel M, Globisch D, Trindler C, Carell T
Org. Lett. 12 (24) 5671-5673 [2010-12-17; online 2010-12-17]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
The SNAP25 gene is linked to working memory capacity and maturation of the posterior cingulate cortex during childhood.
Söderqvist S, McNab F, Peyrard-Janvid M, ..., Kere J, Klingberg T
Biol. Psychiatry 68 (12) 1120-1125 [2010-12-15; online 2010-10-15]
PubMed DOI Crossref
Analysis of transcript and protein overlap in a human osteosarcoma cell line.
Klevebring D, Fagerberg L, Lundberg E, ..., Uhlén M, Lundeberg J
BMC Genomics 11 (-) 684 [2010-12-02; online 2010-12-02]
PubMed DOI Crossref
RNAs actively cycle on the Sm-like protein Hfq.
Fender A, Elf J, Hampel K, Zimmermann B, Wagner EG
Genes Dev. 24 (23) 2621-2626 [2010-12-01; online 2010-12-03]
PubMed DOI Crossref
Towards a knowledge-based Human Protein Atlas.
Uhlen M, Oksvold P, Fagerberg L, ..., Björling L, Ponten F
Nat. Biotechnol. 28 (12) 1248-1250 [2010-12-00; online 2010-12-09]
PubMed DOI Crossref
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.
Willing BP, Dicksved J, Halfvarson J, ..., Jansson JK, Engstrand L
Gastroenterology 139 (6) 1844-1854.e1 [2010-12-00; online 2010-10-08]
PubMed DOI Crossref
High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5.
Ching YH, Munroe RJ, Moran JL, ..., Stover PJ, Schimenti JC
BMC Genet. 11 (-) 106 [2010-11-30; online 2010-11-30]
PubMed DOI Crossref
Stochastic reaction-diffusion kinetics in the microscopic limit.
Fange D, Berg OG, Sjöberg P, Elf J
Proc. Natl. Acad. Sci. U.S.A. 107 (46) 19820-19825 [2010-11-16; online 2010-11-01]
PubMed DOI Crossref
A Complete Set of Nascent Transcription Rates for Yeast Genes
Pelechano V, Chávez S, Pérez-Ortín JE
PLoS ONE 5 (11) e15442 [2010-11-16; online 2010-11-16]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
A Novel Synthetic Route for the Anti-HIV Drug MC-1220 and its Analogues
Loksha YM, Globisch D, Loddo R, ..., La Colla P, Pedersen EB
ChemMedChem 5 (11) 1847-1849 [2010-11-08; online 2010-08-16]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Heat shock transcription factor 1 localizes to sex chromatin during meiotic repression.
Akerfelt M, Vihervaara A, Laiho A, ..., Sistonen L, Henriksson E
J Biol Chem 285 (45) 34469-34476 [2010-11-05; online 2010-08-27]
Anniina Vihervaara SciLifeLab Fellow
PubMed DOI Crossref
Incorporation of Mg and Ca into nanostructured Fe2O3 improves Fe solubility in dilute acid and sensory characteristics in foods.
Hilty FM, Knijnenburg JT, Teleki A, ..., Pratsinis SE, Zimmermann MB
J Food Sci 76 (1) N2-10 [2010-11-04; online 2010-11-04]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Toward next generation plasma profiling via heat-induced epitope retrieval and array-based assays.
Schwenk JM, Igel U, Neiman M, ..., Nilsson P, Uhlen M
Mol. Cell Proteomics 9 (11) 2497-2507 [2010-11-00; online 2010-08-03]
DOI Crossref
Synthesis of novel analogues of zanamivir as neuraminidase inhibitors
Xiong RS, Zhao QJ, Zhu HH, ..., Wei YB, Shen JS
Chinese Chemical Letters 21 (11) 1338-1341 [2010-11-00; online 2010-11-00]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
Effect of Sensor Domain Mutations on the Properties of Voltage-Gated Ion Channels: Molecular Dynamics Studies of the Potassium Channel Kv1.2
Delemotte L, Treptow W, Klein ML, Tarek M
Biophysical Journal 99 (9) L72-L74 [2010-11-00; online 2010-11-00]
Lucie Delemotte SciLifeLab Fellow
PubMed DOI Crossref
A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.
Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2 , Strange A, Capon F, ..., Donnelly P, Trembath RC
Nat. Genet. 42 (11) 985-990 [2010-11-00; online 2010-10-17]
PubMed DOI Crossref
Far-Field Autofluorescence Nanoscopy
Bierwagen J, Testa I, Fölling J, ..., Eggeling C, Hell SW
Nano Lett. 10 (10) 4249-4252 [2010-10-13; online 2010-10-13]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Semiconductor gas sensors: dry synthesis and application.
Tricoli A, Righettoni M, Teleki A
Angew. Chem. Int. Ed. Engl. 49 (42) 7632-7659 [2010-10-11; online 2010-08-19]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate.
Jerlström-Hultqvist J, Franzén O, Ankarklev J, ..., Svärd SG, Andersson B
BMC Genomics 11 (-) 543 [2010-10-07; online 2010-10-07]
PubMed DOI Crossref
Neuroticism-related personality traits are related to symptom severity in patients with premenstrual dysphoric disorder and to the serotonin transporter gene-linked polymorphism 5-HTTPLPR.
Gingnell M, Comasco E, Oreland L, Fredrikson M, Sundström-Poromaa I
Arch Womens Ment Health 13 (5) 417-423 [2010-10-00; online 2010-05-04]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Multicolor Fluorescence Nanoscopy in Fixed and Living Cells by Exciting Conventional Fluorophores with a Single Wavelength
Testa I, Wurm CA, Medda R, ..., Hell SW, Eggeling C
Biophysical Journal 99 (8) 2686-2694 [2010-10-00; online 2010-10-00]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Clinical and experimental pancreatic islet transplantation to striated muscle: establishment of a vascular system similar to that in native islets.
Christoffersson G, Henriksnäs J, Johansson L, ..., Carlsson PO, Phillipson M
Diabetes 59 (10) 2569-2578 [2010-10-00; online 2010-07-22]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Light entrained rhythmic gene expression in the sea anemone Nematostella vectensis: the evolution of the animal circadian clock.
Reitzel AM, Behrendt L, Tarrant AM
PLoS ONE 5 (9) e12805 [2010-09-21; online 2010-09-21]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
A chemotactic gradient sequestered on endothelial heparan sulfate induces directional intraluminal crawling of neutrophils.
Massena S, Christoffersson G, Hjertström E, ..., Li JP, Phillipson M
Blood 116 (11) 1924-1931 [2010-09-16; online 2010-06-08]
Gustaf Christoffersson SciLifeLab Fellow
PubMed DOI Crossref
Chk1 promotes replication fork progression by controlling replication initiation.
Petermann E, Woodcock M, Helleday T
Proc. Natl. Acad. Sci. U.S.A. 107 (37) 16090-16095 [2010-09-14; online 2010-08-30]
PubMed DOI Crossref
Lung cancer proteomics, clinical and technological considerations.
Lehtiö J, De Petris L
J Proteomics 73 (10) 1851-1863 [2010-09-10; online 2010-06-01]
DOI Crossref
Substance graphs are optimal simple-graph representations of metabolism
Holme P, Huss M
Chin. Sci. Bull. 55 (27-28) 3161-3168 [2010-09-00; online 2010-10-14]
PubMed DOI Crossref
Introduction into the analysis of high-throughput-sequencing based epigenome data.
Huss M
Brief. Bioinformatics 11 (5) 512-523 [2010-09-00; online 2010-05-10]
PubMed DOI Crossref
Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres
Lewis PW, Elsaesser SJ, Noh KM, Stadler SC, Allis CD
Proceedings of the National Academy of Sciences 107 (32) 14075-14080 [2010-08-10; online 2010-07-22]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Genome-Wide Evidence for Efficient Positive and Purifying Selection in Capsella grandiflora, a Plant Species with a Large Effective Population Size
Slotte T, Foxe JP, Hazzouri KM, Wright SI
Molecular Biology and Evolution 27 (8) 1813-1821 [2010-08-01; online 2010-03-01]
SciLifeLab Fellow Tanja Slotte
PubMed DOI Crossref
6-thioguanine selectively kills BRCA2-defective tumors and overcomes PARP inhibitor resistance.
Issaeva N, Thomas HD, Djureinovic T, ..., Curtin NJ, Helleday T
Cancer Res. 70 (15) 6268-6276 [2010-08-01; online 2010-07-14]
PubMed DOI Crossref
Why do adolescents drink? Motivational patterns related to alcohol consumption and alcohol-related problems.
Comasco E, Berglund K, Oreland L, Nilsson KW
Subst Use Misuse 45 (10) 1589-1604 [2010-08-00; online 2010-07-02]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
Rodríguez-Gil A, García-Martínez J, Pelechano V, ..., Pérez-Ortín JE, Chávez S
Nucleic Acids Res. 38 (14) 4651-4664 [2010-08-00; online 2010-04-10]
SciLifeLab Fellow Vicent Pelechano
DOI Crossref
Many particle magnetic dipole–dipole and hydrodynamic interactions in magnetizable stent assisted magnetic drug targeting
Cregg PJ, Murphy K, Mardinoglu A, Prina-Mello A
Journal of Magnetism and Magnetic Materials 322 (15) 2087-2094 [2010-08-00; online 2010-08-00]
Adil Mardinoglu SciLifeLab Fellow
PubMed DOI Crossref
Replication-biased genome organisation in the crenarchaeon Sulfolobus.
Andersson AF, Pelve EA, Lindeberg S, ..., Nilsson P, Bernander R
BMC Genomics 11 (-) 454 [2010-07-28; online 2010-07-28]
DOI Crossref
Impacts of added dissolved organic carbon on boreal freshwater pelagic metabolism and food webs in mesocosm experiments
Kankaala P, Peura S, Nykänen H, ..., Tiirola M, Jones RI
Fund. App. Lim. 177 (3) 161-176 [2010-07-09; online 2010-07-09]
Sari Peura SciLifeLab Fellow
PubMed DOI Crossref
Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing.
Hedskog C, Mild M, Jernberg J, ..., Andersson B, Albert J
PLoS ONE 5 (7) e11345 [2010-07-07; online 2010-07-07]
PubMed DOI Crossref
Classification of DNA sequences using Bloom filters.
Stranneheim H, Käller M, Allander T, ..., Arvestad L, Lundeberg J
Bioinformatics 26 (13) 1595-1600 [2010-07-01; online 2010-05-13]
PubMed DOI Crossref
Upregulated Op18/stathmin activity causes chromosomal instability through a mechanism that evades the spindle assembly checkpoint
Holmfeldt P, Sellin ME, Gullberg M
Experimental Cell Research 316 (12) 2017-2026 [2010-07-00; online 2010-07-00]
Mikael Sellin SciLifeLab Fellow
PubMed DOI Crossref
Quantification of the Sixth DNA Base Hydroxymethylcytosine in the Brain
Münzel M, Globisch D, Brückl T, ..., Biel M, Carell T
Angewandte Chemie International Edition 49 (31) 5375-5377 [2010-06-25; online 2010-06-25]
Daniel Globisch SciLifeLab Fellow
PubMed DOI Crossref
Control of membrane protein topology by a single C-terminal residue.
Seppälä S, Slusky JS, Lloris-Garcerá P, Rapp M, von Heijne G
Science (New York, N.Y.) 328 (5986) 1698-1700 [2010-06-25; online 2010-05-27]
PubMed DOI Crossref
Induction of cytochrome P450 1 genes and stress response genes in developing zebrafish exposed to ultraviolet radiation.
Behrendt L, Jönsson ME, Goldstone JV, Stegeman JJ
Aquat Toxicol 98 (1) 74-82 [2010-06-01; online 2010-02-04]
Lars Behrendt SciLifeLab Fellow
PubMed DOI Crossref
Local release of highly loaded antibodies from functionalized nanoporous support for cancer immunotherapy.
Lei C, Liu P, Chen B, ..., Liu J, Hellstrom KE
Journal of the American Chemical Society 132 (20) 6906-6907 [2010-05-26; online 2010-05-04]
SciLifeLab Fellow Yumeng Mao
PubMed DOI Crossref
Amplified fragment length polymorphism (AFLP) analysis of closely related wild and captive tsetse fly (Glossina morsitans morsitans) populations.
Lall GK, Darby AC, Nystedt B, ..., Bishop RP, Welburn SC
Parasit Vectors 3 (-) 47 [2010-05-26; online 2010-05-26]
PubMed DOI Crossref
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
Schmidt D, Wilson MD, Ballester B, ..., Flicek P, Odom DT
Science 328 (5981) 1036-1040 [2010-05-21; online 2010-04-08]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Structure-Based Discovery of A2A Adenosine Receptor Ligands
Carlsson J, Yoo L, Gao ZG, ..., Shoichet BK, Jacobson KA
J. Med. Chem. 53 (9) 3748-3755 [2010-05-13; online 2010-05-13]
Jens Carlsson SciLifeLab Fellow
PubMed DOI Crossref
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
Git A, Dvinge H, Salmon-Divon M, ..., Bertone P, Caldas C
RNA 16 (5) 991-1006 [2010-05-01; online 2010-04-01]
Claudia Kutter SciLifeLab Fellow
PubMed DOI Crossref
Understanding biological dynamics: following cells and molecules to track functions and mechanisms
Palamidessi A, Testa I, Frittoli E, ..., Scita G, Faretta M
Eur Biophys J 39 (6) 947-957 [2010-05-00; online 2009-05-20]
Ilaria Testa SciLifeLab Fellow
PubMed DOI Crossref
Iron from nanocompounds containing iron and zinc is highly bioavailable in rats without tissue accumulation.
Hilty FM, Arnold M, Hilbe M, ..., Langhans W, Zimmermann MB
Nat Nanotechnol 5 (5) 374-380 [2010-05-00; online 2010-04-25]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
Continuous surface functionalization of flame-made TiO2 nanoparticles.
Teleki A, Bjelobrk N, Pratsinis SE
Langmuir 26 (8) 5815-5822 [2010-04-20; online 2010-03-03]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
International network of cancer genome projects.
International Cancer Genome Consortium , Hudson TJ, Anderson W, ..., Liu ET, Wainwright BJ
Nature 464 (7291) 993-998 [2010-04-15; online 2010-04-16]
PubMed DOI Crossref
Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes
Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR
PLoS Comput Biol 6 (4) e1000729 [2010-04-01; online 2010-04-01]
Aleksej Zelezniak SciLifeLab Fellow
PubMed DOI Crossref
New functions for an old variant: no substitute for histone H3.3
Elsaesser SJ, Goldberg AD, Allis CD
Current Opinion in Genetics & Development 20 (2) 110-117 [2010-04-00; online 2010-04-00]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
In vivo and in vitro characterization of [18F]-FE-(+)-DTBZ as a tracer for beta-cell mass.
Eriksson O, Jahan M, Johnström P, ..., Halldin C, Johansson L
Nucl. Med. Biol. 37 (3) 357-363 [2010-04-00; online 2010-01-15]
Olof Eriksson SciLifeLab Fellow
PubMed DOI Crossref
There is a steady-state transcriptome in exponentially growing yeast cells
Pelechano V, Pérez-Ortín JE
Yeast 27 (7) 413-422 [2010-03-17; online 2010-03-17]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Intersubunit capture of regulatory segments is a component of cooperative CaMKII activation
Chao LH, Pellicena P, Deindl S, ..., Schulman H, Kuriyan J
Nat Struct Mol Biol 17 (3) 264-272 [2010-03-00; online 2010-02-07]
SciLifeLab Fellow Sebastian Deindl
PubMed DOI Crossref
Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions
Goldberg AD, Banaszynski LA, Noh KM, ..., Zheng D, Allis CD
Cell 140 (5) 678-691 [2010-03-00; online 2010-03-00]
SciLifeLab Fellow Simon Elsässer
PubMed DOI Crossref
Unconventional Ubiquitin Recognition by the Ubiquitin-Binding Motif within the Y Family DNA Polymerases ι and Rev1
Bomar MG, D'Souza S, Bienko M, ..., Walker GC, Zhou P
Molecular Cell 37 (3) 408-417 [2010-02-00; online 2010-02-00]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
The clock gene PER2 and sleep problems: association with alcohol consumption among Swedish adolescents.
Comasco E, Nordquist N, Göktürk C, ..., Oreland L, Nilsson KW
Ups. J. Med. Sci. 115 (1) 41-48 [2010-02-00; online 2010-03-02]
Erika Comasco SciLifeLab Fellow
PubMed DOI Crossref
Regulation of Translesion Synthesis DNA Polymerase η by Monoubiquitination
Bienko M, Green CM, Sabbioneda S, ..., Lehmann AR, Dikic I
Molecular Cell 37 (3) 396-407 [2010-02-00; online 2010-02-00]
Magda Bienko SciLifeLab Fellow
PubMed DOI Crossref
Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium.
Jonas K, Edwards AN, Ahmad I, ..., Römling U, Melefors O
Environ. Microbiol. 12 (2) 524-540 [2010-02-00; online 2009-11-17]
Kristina Jonas SciLifeLab Fellow
PubMed DOI Crossref
Structure Determination and Improved Model of Plant Photosystem I
Amunts A, Toporik H, Borovikova A, Nelson N
J. Biol. Chem. 285 (5) 3478-3486 [2010-01-29; online 2009-11-18]
Alexey Amunts SciLifeLab Fellow
PubMed DOI Crossref
Differential effects of anti-apoptotic Bcl-2 family members Mcl-1, Bcl-2, and Bcl-xL on Celecoxib-induced apoptosis
Rudner J, Elsaesser SJ, Müller AC, Belka C, Jendrossek V
Biochemical Pharmacology 79 (1) 10-20 [2010-01-00; online 2010-01-00]
SciLifeLab Fellow Simon Elsässer
DOI Crossref
Novel and Practical Synthesis of Candesartan Cilexetil
Shen J, Mao Y, Xiong R, ..., Li H, Shen J
HETEROCYCLES 81 (6) 1503 [2010-00-00; online 2010-00-00]
Ruisheng Xiong SciLifeLab Fellow
DOI Crossref
Improved Total Synthesis of Racemic Rutamarin
Jiang X, Sun H, Xiong R, ..., Jiang H, Shen J
HETEROCYCLES 81 (7) 1697 [2010-00-00; online 2010-00-00]
Ruisheng Xiong SciLifeLab Fellow
PubMed DOI Crossref
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists
Burki F, Kudryavtsev A, Matz MV, ..., Keeling PJ, Pawlowski J
BMC Evol Biol BMC Evolutionary Biology 10 (1) 377 [2010-00-00; online 2010-00-00]
Fabien Burki SciLifeLab Fellow
DOI Crossref
Design and assessment of binary DNA for nanopore sequencing
Akan P, Stranneheim H, Lexow P, Lundeberg J
Genome Biol Genome Biology 11 (Suppl 1) P4 [2010-00-00; online 2010-00-00]
PubMed DOI Crossref
Deciphering the porcine intestinal microRNA transcriptome
Sharbati S, Friedlander MR, Sharbati J, ..., Rajewsky N, Einspanier R
BMC Genomics 11 (1) 275 [2010-00-00; online 2010-00-00]
Marc Friedländer SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1