Publications 2010

52 publications

PubMed DOI Crossref
Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates
Globisch D, Münzel M, Müller M, ..., Biel M, Carell T
PLoS ONE 5 (12) e15367 [2010-12-23; online 2010-12-23]
Fellow
PubMed DOI Crossref
Defining the transcriptome and proteome in three functionally different human cell lines.
Lundberg E, Fagerberg L, Klevebring D, ..., Mann M, Uhlen M
pmc
Mol Syst Biol 6 (-) 450 [2010-12-21; online 2010-12-24]
Affiliated researcher
PubMed DOI Crossref
Efficient Synthesis of 5-Hydroxymethylcytosine Containing DNA
Münzel M, Globisch D, Trindler C, Carell T
Org. Lett. 12 (24) 5671-5673 [2010-12-17; online 2010-12-17]
Fellow
PubMed DOI Crossref
The SNAP25 gene is linked to working memory capacity and maturation of the posterior cingulate cortex during childhood.
Söderqvist S, McNab F, Peyrard-Janvid M, ..., Kere J, Klingberg T
Biol. Psychiatry 68 (12) 1120-1125 [2010-12-15; online 2010-10-15]
Affiliated researcher
PubMed DOI Crossref
Analysis of transcript and protein overlap in a human osteosarcoma cell line.
Klevebring D, Fagerberg L, Lundberg E, ..., Uhlén M, Lundeberg J
pmc
BMC Genomics 11 (-) 684 [2010-12-02; online 2010-12-02]
Affiliated researcher
PubMed DOI Crossref
RNAs actively cycle on the Sm-like protein Hfq.
Fender A, Elf J, Hampel K, Zimmermann B, Wagner EG
pmc
Genes Dev. 24 (23) 2621-2626 [2010-12-01; online 2010-12-03]
Affiliated researcher
PubMed DOI Crossref
A pyrosequencing study in twins shows that gastrointestinal microbial profiles vary with inflammatory bowel disease phenotypes.
Willing BP, Dicksved J, Halfvarson J, ..., Jansson JK, Engstrand L
Gastroenterology 139 (6) 1844-1854.e1 [2010-12-00; online 2010-10-08]
Affiliated researcher
PubMed DOI Crossref
Stochastic reaction-diffusion kinetics in the microscopic limit.
Fange D, Berg OG, Sjöberg P, Elf J
pmc
Proc. Natl. Acad. Sci. U.S.A. 107 (46) 19820-19825 [2010-11-16; online 2010-11-01]
Affiliated researcher
PubMed DOI Crossref
A Complete Set of Nascent Transcription Rates for Yeast Genes
Pelechano V, Chávez S, Pérez-Ortín JE
PLoS ONE 5 (11) e15442 [2010-11-16; online 2010-11-16]
Fellow
PubMed DOI Crossref
A Novel Synthetic Route for the Anti-HIV Drug MC-1220 and its Analogues
Loksha YM, Globisch D, Loddo R, ..., La Colla P, Pedersen EB
ChemMedChem 5 (11) 1847-1849 [2010-11-08; online 2010-08-16]
Fellow
PubMed DOI Crossref
A genome-wide association study identifies new psoriasis susceptibility loci and an interaction between HLA-C and ERAP1.
Genetic Analysis of Psoriasis Consortium & the Wellcome Trust Case Control Consortium 2 , Strange A, Capon F, ..., Donnelly P, Trembath RC
pmc mid
Nat. Genet. 42 (11) 985-990 [2010-11-00; online 2010-10-17]
Affiliated researcher
PubMed DOI Crossref
Far-Field Autofluorescence Nanoscopy
Bierwagen J, Testa I, Fölling J, ..., Eggeling C, Hell SW
Nano Lett. 10 (10) 4249-4252 [2010-10-13; online 2010-10-13]
Fellow
PubMed DOI Crossref
Genome analysis and comparative genomics of a Giardia intestinalis assemblage E isolate.
Jerlström-Hultqvist J, Franzén O, Ankarklev J, ..., Svärd SG, Andersson B
pmc
BMC Genomics 11 (-) 543 [2010-10-07; online 2010-10-07]
Affiliated researcher
PubMed DOI Crossref
6-thioguanine selectively kills BRCA2-defective tumors and overcomes PARP inhibitor resistance.
Issaeva N, Thomas HD, Djureinovic T, ..., Curtin NJ, Helleday T
pmc mid
Cancer Res. 70 (15) 6268-6276 [2010-08-01; online 2010-07-14]
Affiliated researcher
PubMed DOI Crossref
The distribution of active RNA polymerase II along the transcribed region is gene-specific and controlled by elongation factors
Rodríguez-Gil A, García-Martínez J, Pelechano V, ..., Pérez-Ortín JE, Chávez S
- 38 (14) 4651-4664 [2010-08-00; online 2010-04-10]
Fellow
PubMed DOI Crossref
Replication-biased genome organisation in the crenarchaeon Sulfolobus.
Andersson AF, Pelve EA, Lindeberg S, ..., Nilsson P, Bernander R
pmc
BMC Genomics 11 (-) 454 [2010-07-28; online 2010-07-28]
Affiliated researcher
DOI Crossref
Impacts of added dissolved organic carbon on boreal freshwater pelagic metabolism and food webs in mesocosm experiments
Kankaala P, Peura S, Nykänen H, ..., Tiirola M, Jones RI
Fund. App. Lim. 177 (3) 161-176 [2010-07-09; online 2010-07-09]
Fellow
PubMed DOI Crossref
Dynamics of HIV-1 quasispecies during antiviral treatment dissected using ultra-deep pyrosequencing.
Hedskog C, Mild M, Jernberg J, ..., Andersson B, Albert J
pmc
PLoS ONE 5 (7) e11345 [2010-07-07; online 2010-07-07]
Affiliated researcher
PubMed DOI Crossref
Classification of DNA sequences using Bloom filters.
Stranneheim H, Käller M, Allander T, ..., Arvestad L, Lundeberg J
pmc
Bioinformatics 26 (13) 1595-1600 [2010-07-01; online 2010-05-13]
Affiliated researcher
PubMed DOI Crossref
Control of membrane protein topology by a single C-terminal residue.
Seppälä S, Slusky JS, Lloris-Garcerá P, Rapp M, von Heijne G
Science 328 (5986) 1698-1700 [2010-06-25; online 2010-05-27]
Affiliated researcher
PubMed DOI Crossref
Quantification of the Sixth DNA Base Hydroxymethylcytosine in the Brain
Münzel M, Globisch D, Brückl T, ..., Biel M, Carell T
Angewandte Chemie International Edition 49 (31) 5375-5377 [2010-06-25; online 2010-06-25]
Fellow
PubMed DOI Crossref
Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding
Schmidt D, Wilson MD, Ballester B, ..., Flicek P, Odom DT
Science 328 (5981) 1036-1040 [2010-05-21; online 2010-04-08]
Fellow
PubMed DOI Crossref
Structure-Based Discovery of A2A Adenosine Receptor Ligands
Carlsson J, Yoo L, Gao ZG, ..., Shoichet BK, Jacobson KA
J. Med. Chem. 53 (9) 3748-3755 [2010-05-13; online 2010-05-13]
Fellow
PubMed DOI Crossref
Understanding biological dynamics: following cells and molecules to track functions and mechanisms
Palamidessi A, Testa I, Frittoli E, ..., Scita G, Faretta M
Eur Biophys J 39 (6) 947-957 [2010-05-00; online 2009-05-20]
Fellow
PubMed DOI Crossref
International network of cancer genome projects.
International Cancer Genome Consortium , Hudson TJ, Anderson W, ..., Liu ET, Wainwright BJ
pmc mid
Nature 464 (7291) 993-998 [2010-04-15; online 2010-04-16]
Affiliated researcher
PubMed DOI Crossref
Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes
Zelezniak A, Pers TH, Soares S, Patti ME, Patil KR
PLoS Comput Biol 6 (4) e1000729 [2010-04-01; online 2010-04-01]
Fellow
PubMed DOI Crossref
There is a steady-state transcriptome in exponentially growing yeast cells
Pelechano V, Pérez-Ortín JE
Yeast 27 (7) 413-422 [2010-03-17; online 2010-03-17]
Fellow
PubMed DOI Crossref
Intersubunit capture of regulatory segments is a component of cooperative CaMKII activation
Chao LH, Pellicena P, Deindl S, ..., Schulman H, Kuriyan J
Nat Struct Mol Biol 17 (3) 264-272 [2010-03-00; online 2010-02-07]
Fellow
PubMed DOI Crossref
Distinct Factors Control Histone Variant H3.3 Localization at Specific Genomic Regions
Goldberg AD, Banaszynski LA, Noh KM, ..., Zheng D, Allis CD
Cell 140 (5) 678-691 [2010-03-00; online 2010-03-00]
Fellow
PubMed DOI Crossref
Regulation of Translesion Synthesis DNA Polymerase η by Monoubiquitination
Bienko M, Green CM, Sabbioneda S, ..., Lehmann AR, Dikic I
Molecular Cell 37 (3) 396-407 [2010-02-00; online 2010-02-00]
Fellow
PubMed DOI Crossref
Complex regulatory network encompassing the Csr, c-di-GMP and motility systems of Salmonella Typhimurium.
Jonas K, Edwards AN, Ahmad I, ..., Römling U, Melefors O
pmc mid
Environ. Microbiol. 12 (2) 524-540 [2010-02-00; online 2009-11-17]
Fellow
PubMed DOI Crossref
Structure Determination and Improved Model of Plant Photosystem I
Amunts A, Toporik H, Borovikova A, Nelson N
J. Biol. Chem. 285 (5) 3478-3486 [2010-01-29; online 2009-11-18]
Fellow
PubMed DOI Crossref
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists
Burki F, Kudryavtsev A, Matz MV, ..., Keeling PJ, Pawlowski J
BMC Evol Biol BMC Evolutionary Biology 10 (1) 377 [2010-00-00; online 2010-00-00]
Fellow
PubMed DOI Crossref
Deciphering the porcine intestinal microRNA transcriptome
Sharbati S, Friedlander MR, Sharbati J, ..., Rajewsky N, Einspanier R
BMC Genomics 11 (1) 275 [2010-00-00; online 2010-00-00]
Fellow