SciLifeLab Affiliated and Fellows Publications

Strategies for taxonomic and functional annotation of metagenomes

Abramova A, Bengtsson-Palme J

- - (-) 57-81 [2025-00-00; online 2025-00-00]

Menstrual cycle-related changes in the human brain

Pletzer B, Comasco E, Hidalgo-Lopez E, ..., Sundström-Poromaa I, Derntl B

- - (-) 604-623 [2025-00-00; online 2025-00-00]

Progestagens and progesterone receptor modulation: Effects on the brain, mood, stress, and cognition in females.

Bencker C, Gschwandtner L, Nayman S, ..., Bixo M, Comasco E

Front Neuroendocrinol - (-) 101160 [2024-11-06; online 2024-11-06]

Spatial Multiomics Reveals Intratumoral Immune Heterogeneity with Distinct Cytokine Networks in Lung Cancer Brain Metastases.

Christensson G, Bocci M, Kazi JU, ..., Gonzalez Velozo H, Hagerling C

Cancer Res Commun 4 (11) 2888-2902 [2024-11-01; online 2024-10-14]

White matter integrity upon progesterone antagonism in individuals with premenstrual dysphoric disorder: A randomized placebo-controlled diffusion tensor imaging study.

Kaltsouni E, Gu X, Wikström J, ..., Sundström-Poromaa I, Comasco E

Prog Neuropsychopharmacol Biol Psychiatry 136 (-) 111179 [2024-10-23; online 2024-10-23]

Fish are poor sentinels for surveillance of riverine AMR

Tskhay F, Köbsch C, Elena AX, ..., Berendonk TU, Klümper U

- - (-) - [2024-10-22; online 2024-10-22]

Metagenomic assemblies tend to break around antibiotic resistance genes.

Abramova A, Karkman A, Bengtsson-Palme J

BMC Genomics 25 (1) 959 [2024-10-14; online 2024-10-14]

Peripartum depression symptom trajectories, telomere length and genotype, and adverse childhood experiences.

Vrettou M, Lager S, Toffoletto S, ..., Skalkidou A, Comasco E

BMC Psychiatry 24 (1) 661 [2024-10-08; online 2024-10-08]

Genetic Adaptation to Amoxicillin inEscherichia coli: The Limited Role ofdinBandkatE

Teichmann L, Wenne M, Luitwieler S, ..., Bengtsson-Palme J, Kuile Bt

- - (-) - [2024-10-06; online 2024-10-06]

The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.

Weitz P, Valkonen M, Solorzano L, ..., Ruusuvuori P, Rantalainen M

Med Image Anal 97 (-) 103257 [2024-10-00; online 2024-07-01]

Kimmo Kartasalo

Bayesian polynomial neural networks and polynomial neural ordinary differential equations.

Fronk C, Yun J, Singh P, Petzold L

PLoS Comput Biol 20 (10) e1012414 [2024-10-00; online 2024-10-10]

Prashant Singh SciLifeLab Fellow

The regulatory landscape of interacting RNA and protein pools in cellular homeostasis and cancer.

Gallardo-Dodd CJ, Kutter C

Hum Genomics 18 (1) 109 [2024-09-27; online 2024-09-27]

Claudia Kutter SciLifeLab Fellow

The Organelle in the Ointment: improved detection of cryptic mitochondrial reads resolves many unknown sequences in cross-species microbiome analyses

Sonett D, Brown T, Bengtsson-Palme J, Padilla-Gamiño JL, Zaneveld JR

ISME Commun - (-) - [2024-09-24; online 2024-09-24]

Epigenetic regulation of cell state by H2AFY governs immunogenicity in high-risk neuroblastoma.

Nagarajan D, Parracho RT, Corujo D, ..., Buschbeck M, Mao Y

J. Clin. Invest. - (-) - [2024-09-10; online 2024-09-10]

SciLifeLab Fellow Yumeng Mao

Comprehensive analysis of the RBP regulome reveals functional modules and drug candidates in liver cancer

Garbulowski M, Mosca R, Gallardo-Dodd CJ, Kutter C, Sonnhammer ELL

- - (-) - [2024-09-06; online 2024-09-06]

Claudia Kutter SciLifeLab Fellow

Structure prediction of alternative protein conformations

Bryant P, Noé F

Nat Commun 15 (1) - [2024-08-26; online 2024-08-26]

Patrick Bryant

Escherichia coli in urban marine sediments: interpreting virulence, biofilm formation, halotolerance, and antibiotic resistance to infer contamination or naturalization.

Erb IK, Suarez C, Frank EM, ..., Lindberg E, Paul CJ

FEMS Microbes 5 (-) xtae024 [2024-08-14; online 2024-08-14]

Improved protein complex prediction with AlphaFold-multimer by denoising the MSA profile

Bryant P, Noé F

PLoS Comput Biol 20 (7) e1012253 [2024-07-25; online 2024-07-25]

Patrick Bryant

Design of linear and cyclic peptide binders of different lengths from protein sequence information

Li Q, Vlachos EN, Bryant P

- - (-) - [2024-06-22; online 2024-06-22]

Patrick Bryant

Fluoroquinolone-Specific Resistance Trajectories inE. coliand their Dependence on the SOS-Response

Teichmann L, Luitwieler S, Bengtsson-Palme J, ter Kuile B

- - (-) - [2024-06-06; online 2024-06-06]