SciLifeLab Affiliated and Fellows Publications

The publications in this database are authored by SciLifeLab Fellows, DDLS Fellows and other researchers affiliated with SciLifeLab.

Publications resulting from research assisted by the infrastructure units of SciLifeLab are available in a separate database at https://publications.scilifelab.se/.

Publications by year

2025 (13)

2024 (138)

2023 (212)

2022 (243)

2021 (271)

2020 (184)

2019 (163)

2018 (579)

2017 (788)

2016 (753)

2015 (640)

2014 (585)

2013 (461)

2012 (330)

2011 (191)

2010 (67)

2009 (38)

2008 (38)

2007 (13)

2006 (19)

2005 (9)

2004 (3)

2003 (2)

2002 (1)

All (5741)


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Journals

The 20 most recent publications

DOI Crossref
Early gonadotoxic effects of cyclophosphamide on the prepubertal testis and the feasibility of reducing toxicity through combined antioxidant therapy
Eskafinoghani A, Reyes Palomares A, Hao X, ..., Lundberg A, Rodriguez-Walberg KA
- - (-) - [2025-03-19; online 2025-03-19]
Arian Lundberg DDLS Fellow
PubMed DOI Crossref
Androgen Receptor Inhibition Increases MHC Class I Expression and Improves Immune Response in Prostate Cancer.
Chesner LN, Polesso F, Graff JN, ..., Feng FY, Moran AE
Cancer Discovery 15 (3) 481-494 [2025-03-03; online 2024-12-09]
Arian Lundberg DDLS Fellow
DOI Crossref
PyOrthoANI, PyFastANI, and Pyskani: a suite of Python libraries for computation of average nucleotide identity
Larralde M, Zeller G, Carroll LM
- - (-) - [2025-02-17; online 2025-02-17]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Towards an interpretable deep learning model of cancer.
Nilsson A, Meimetis N, Lauffenburger DA
NPJ Precis Oncol 9 (1) 46 [2025-02-14; online 2025-02-14]
Avlant Nilsson DDLS Fellow
DOI Crossref
The business case for investing in biodiversity data
Hasan F, Nyström J, Andersson C, ..., Johansson V, Andermann T
- - (-) - [2025-02-04; online 2025-02-04]
DDLS Fellow Tobias Andermann
PubMed DOI Crossref
Telomemore enables single-cell analysis of cell cycle and chromatin condensation.
Yakovenko I, Mihai IS, Selinger M, ..., Forsell M, Henriksson J
Nucleic Acids Res. 53 (3) - [2025-01-24; online 2025-01-29]
DDLS Fellow Laura Carroll
PubMed DOI Crossref
Protocol to infer off-target effects of drugs on cellular signaling using interactome-based deep learning.
Meimetis N, Lauffenburger DA, Nilsson A
STAR Protoc 6 (1) 103573 [2025-01-16; online 2025-01-16]
Avlant Nilsson DDLS Fellow
DOI Crossref
DTPPI: predicting drug interactions using a weighted drug-protein network
Szydlik S, Taheri G
- - (-) - [2025-01-08; online 2025-01-08]
DDLS Fellow Golnaz Taheri
DOI Crossref
Unveiling Driver Modules in Lung Cancer: A Clustering-Based Gene-Gene Interaction Network Analysis
Taheri G, Szalai M, Habibi M, Papapetrou P
- - (-) 41-58 [2025-00-00; online 2025-01-01]
DDLS Fellow Golnaz Taheri
DOI Crossref
The Utility of Deep Learning for Modeling Seasonal Biodiversity Changes Across the Landscape
Baggström A, Goodsell R, van Dijk L, ..., Tack A, Andermann T
- - (-) - [2025-00-00; online 2025-00-00]
DDLS Fellow Tobias Andermann
DOI Crossref
Strategies for taxonomic and functional annotation of metagenomes
Abramova A, Bengtsson-Palme J
- - (-) 57-81 [2025-00-00; online 2025-00-00]
DDLS Fellow Johan Bengtsson-Palme
DOI Crossref
GenePioneer: A Comprehensive Python Package for Identification of Essential Genes and Modules in Cancer
Taheri G, Haerianardakani A
- - (-) - [2024-12-21; online 2024-12-21]
DDLS Fellow Golnaz Taheri
PubMed DOI Crossref
Author Correction: AutoTransOP: translating omics signatures without orthologue requirements using deep learning.
Meimetis N, Pullen KM, Zhu DY, ..., Magliacane S, Lauffenburger DA
NPJ Syst Biol Appl 10 (1) 148 [2024-12-13; online 2024-12-13]
Avlant Nilsson DDLS Fellow
DOI Crossref
Plasma proteomics for novel biomarker discovery in childhood tuberculosis
Fossati A, Wambi P, Jaganath D, ..., Zar HJ, Swaney DL
- - (-) - [2024-12-08; online 2024-12-08]
Andrea Fossati DDLS Fellow
PubMed DOI Crossref
A landscape of X-inactivation during human T cell development.
Gylemo B, Bensberg M, Hennings V, ..., Ekwall O, Nestor CE
Nat Commun 15 (1) 10527 [2024-12-04; online 2024-12-04]
Antonio Lentini DDLS Fellow
DOI Crossref
Microneedles loaded with lipid nanocarriers for local treatment of vulvovaginal candidiasis
Udayakumar P, Škalko-Basnet N, Salas Cotaquispe CF, ..., Du J, Teleki A
- - (-) - [2024-11-25; online 2024-11-25]
Alexandra Teleki SciLifeLab Fellow
PubMed DOI Crossref
The early transcriptional and post-transcriptional responses to fluconazole in sensitive and resistant Candida albicans.
Stevens I, Silao FG, Huch S, ..., Ljungdahl PO, Pelechano V
Sci Rep 14 (1) 29012 [2024-11-22; online 2024-11-22]
SciLifeLab Fellow Vicent Pelechano
PubMed DOI Crossref
Flipping a switch on BRD4: How to control the do-it-all.
van Hout FAH, Vihervaara A
Mol. Cell 84 (22) 4257-4259 [2024-11-21; online 2024-11-23]
Anniina Vihervaara SciLifeLab Fellow
PubMed DOI Crossref
Single-molecule states link transcription factor binding to gene expression.
Doughty BR, Hinks MM, Schaepe JM, ..., Bintu L, Greenleaf WJ
Nature - (-) - [2024-11-20; online 2024-11-20]
Emil Marklund SciLifeLab Fellow
PubMed DOI Crossref
Complete genome sequences of the prosthecate dimorphic bacteria Brevundimonas intermedia CB63T and Brevundimonas staleyi FWC43T.
Hallgren J, Daneby F, Jonas K
Microbiol Resour Announc - (-) e0105024 [2024-11-20; online 2024-11-20]
Kristina Jonas SciLifeLab Fellow
SciLifeLab Data Centre
Publications 9.5.1